Wall clock time and date at job start Tue Mar 31 2020 16:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00018 * 2 1 4 4 H 1.48495 * 109.46897 * 270.00102 * 3 2 1 5 5 H 1.48504 * 109.46632 * 30.00010 * 3 2 1 6 6 H 1.48493 * 109.47271 * 149.99908 * 3 2 1 7 7 C 1.38817 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00040 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99962 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99663 * 180.02562 * 9 7 2 11 11 C 1.53781 * 113.61255 * 155.00097 * 10 9 7 12 12 C 1.53779 * 87.08584 * 89.11060 * 11 10 9 13 13 C 1.52999 * 113.61263 * 139.97993 * 12 11 10 14 14 N 1.46500 * 109.46757 * 176.53223 * 13 12 11 15 15 C 1.34773 * 120.00138 * 179.97438 * 14 13 12 16 16 O 1.21628 * 119.99977 * 0.02562 * 15 14 13 17 17 C 1.47312 * 120.00357 * 179.97438 * 15 14 13 18 18 C 1.37817 * 126.52615 * 0.03267 * 17 15 14 19 19 N 1.34784 * 108.25396 * 179.97438 * 18 17 15 20 20 H 0.96995 * 125.36699 * 179.73964 * 19 18 17 21 21 C 1.37304 * 109.26792 * 359.97438 * 19 18 17 22 22 C 1.48004 * 125.76275 * 180.02562 * 21 19 18 23 23 N 1.34179 * 126.69917 * 179.71284 * 22 21 19 24 24 N 1.28983 * 107.25822 * 179.86769 * 23 22 21 25 25 N 1.28724 * 108.98165 * 0.39401 * 24 23 22 26 26 H 0.96998 * 125.31920 * 179.76345 * 25 24 23 27 27 N 1.28868 * 109.35552 * 359.74849 * 25 24 23 28 28 C 1.35697 * 108.47581 * 359.97438 * 21 19 18 29 29 C 1.53782 * 87.17070 * 25.38995 * 12 11 10 30 30 H 0.96998 * 120.00179 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00247 * 359.97438 * 9 7 2 32 32 H 1.08991 * 112.85172 * 23.80038 * 10 9 7 33 33 H 1.09005 * 113.61192 * 334.56272 * 11 10 9 34 34 H 1.09003 * 113.61420 * 203.66360 * 11 10 9 35 35 H 1.09004 * 113.61472 * 270.80377 * 12 11 10 36 36 H 1.08996 * 109.47515 * 56.53583 * 13 12 11 37 37 H 1.09000 * 109.46751 * 296.52748 * 13 12 11 38 38 H 0.97000 * 120.00213 * 0.02562 * 14 13 12 39 39 H 1.08004 * 125.87665 * 0.02562 * 18 17 15 40 40 H 1.08004 * 126.47106 * 180.02562 * 28 21 19 41 41 H 1.08995 * 113.61500 * 89.15555 * 29 12 11 42 42 H 1.08996 * 113.61437 * 220.06017 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4704 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4709 0.0011 11 6 5.5263 -2.3657 -0.5938 12 6 6.0125 -2.0237 0.8244 13 6 7.3467 -2.6777 1.1893 14 7 7.7633 -2.2276 2.5197 15 6 8.9169 -2.6768 3.0525 16 8 9.6123 -3.4556 2.4285 17 6 9.3362 -2.2239 4.3900 18 6 8.6568 -1.3492 5.2102 19 7 9.3692 -1.1936 6.3438 20 1 9.1192 -0.6275 7.0907 21 6 10.5071 -1.9586 6.2724 22 6 11.5482 -2.0601 7.3195 23 7 12.6634 -2.8048 7.2719 24 7 13.3004 -2.6109 8.3765 25 7 12.6305 -1.7901 9.1077 26 1 12.8921 -1.4828 9.9897 27 7 11.5582 -1.4403 8.4844 28 6 10.5155 -2.6067 5.0802 29 6 4.7868 -2.7912 1.3474 30 1 -0.4850 0.8400 -0.0004 31 1 3.8647 -0.3621 0.0007 32 1 3.5281 -3.2968 -0.4047 33 1 5.6414 -1.5470 -1.3042 34 1 5.9127 -3.3125 -0.9714 35 1 5.9883 -0.9573 1.0490 36 1 8.1025 -2.3945 0.4568 37 1 7.2312 -3.7615 1.1920 38 1 7.2086 -1.6068 3.0175 39 1 7.7150 -0.8713 4.9840 40 1 11.2765 -3.2852 4.7237 41 1 4.9706 -3.8545 1.5015 42 1 4.3058 -2.3156 2.2020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001581857443.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:15 Heat of formation + Delta-G solvation = 168.564294 kcal Electronic energy + Delta-G solvation = -26240.091541 eV Core-core repulsion = 22260.155763 eV Total energy + Delta-G solvation = -3979.935778 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.93378 -41.74246 -39.46513 -38.41370 -34.87722 -34.66320 -33.86161 -33.22369 -31.76954 -30.72087 -29.78431 -27.48052 -25.17362 -25.07861 -24.46040 -23.71598 -22.80490 -21.67106 -21.13745 -19.89830 -19.73225 -18.79610 -18.35045 -17.65869 -17.64875 -16.50239 -15.89477 -15.43028 -15.14726 -14.95889 -14.65431 -14.47568 -14.34371 -14.01315 -13.64271 -13.50326 -13.32726 -12.79101 -12.76245 -12.65683 -12.48882 -12.03961 -11.88534 -11.64612 -11.57195 -11.49127 -11.35794 -10.93837 -10.50624 -10.29988 -10.17373 -9.87718 -9.67594 -9.53053 -9.45532 -8.98920 -8.91953 -8.59194 -7.32547 -5.82370 -3.18423 0.44993 0.96264 1.51366 1.70995 2.38872 2.44302 3.10801 3.30860 3.34749 3.40363 3.42341 3.45809 3.85078 4.52996 4.53647 4.64999 4.71880 4.89752 4.94680 4.97482 5.00224 5.11389 5.38070 5.41812 5.50194 5.53740 5.67226 5.76433 5.84647 5.91125 5.96446 6.14343 6.16903 6.24366 6.32197 6.40937 6.51434 6.62079 6.75532 6.80532 6.89400 7.56862 7.64353 7.96040 8.29867 8.37383 9.15375 9.87542 10.06961 11.35754 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.019794 B = 0.001945 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.256864 B =14389.098105 C =15384.304209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.092 0.908 9 N -0.730 5.730 10 C 0.171 3.829 11 C -0.149 4.149 12 C -0.123 4.123 13 C 0.133 3.867 14 N -0.724 5.724 15 C 0.586 3.414 16 O -0.544 6.544 17 C -0.222 4.222 18 C 0.075 3.925 19 N -0.524 5.524 20 H 0.426 0.574 21 C 0.054 3.946 22 C 0.254 3.746 23 N -0.256 5.256 24 N -0.043 5.043 25 N -0.226 5.226 26 H 0.476 0.524 27 N -0.310 5.310 28 C -0.058 4.058 29 C -0.166 4.166 30 H 0.260 0.740 31 H 0.362 0.638 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.398 0.602 39 H 0.186 0.814 40 H 0.161 0.839 41 H 0.073 0.927 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.221 -1.426 18.346 30.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.110 0.890 9 N -0.370 5.370 10 C 0.060 3.940 11 C -0.188 4.188 12 C -0.142 4.142 13 C 0.009 3.991 14 N -0.374 5.374 15 C 0.374 3.626 16 O -0.422 6.422 17 C -0.232 4.232 18 C -0.066 4.066 19 N -0.118 5.118 20 H 0.264 0.736 21 C -0.058 4.058 22 C -0.026 4.026 23 N -0.130 5.130 24 N -0.038 5.038 25 N -0.072 5.072 26 H 0.331 0.669 27 N -0.162 5.162 28 C -0.086 4.086 29 C -0.207 4.207 30 H 0.070 0.930 31 H 0.195 0.805 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.232 0.768 39 H 0.203 0.797 40 H 0.178 0.822 41 H 0.091 0.909 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 24.995 -2.185 18.278 31.042 hybrid contribution -0.098 2.327 1.188 2.614 sum 24.897 0.142 19.466 31.604 Atomic orbital electron populations 1.69698 1.05097 1.25866 1.57283 1.24687 0.95247 0.97206 1.01967 0.86555 0.79082 0.85013 0.77858 1.21024 1.21753 1.20399 1.19122 0.80449 0.94832 1.43170 0.89028 1.42514 1.03922 1.01641 1.88932 1.21056 0.90149 0.89847 0.92975 1.23455 0.98689 1.01630 0.95047 1.22747 0.92772 0.99999 0.98665 1.21448 0.95709 0.99172 0.82727 1.45871 1.22983 1.48803 1.19774 1.17328 0.80648 0.80359 0.84314 1.90786 1.53894 1.35270 1.62287 1.19682 0.99358 1.06991 0.97142 1.22507 0.98023 1.00183 0.85919 1.41518 1.17029 1.36255 1.16950 0.73615 1.16376 0.89368 1.05320 0.94730 1.22498 0.94555 0.94622 0.90942 1.76198 1.04449 1.19925 1.12388 1.78976 1.19397 1.07108 0.98339 1.47635 1.11884 1.29136 1.18506 0.66921 1.74941 1.08536 1.24794 1.07937 1.21008 0.97682 0.99173 0.90754 1.23874 0.96497 0.98909 1.01403 0.93004 0.80542 0.91072 0.91456 0.89929 0.89299 0.91723 0.91320 0.76783 0.79705 0.82178 0.90885 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.60 13.97 55.49 0.78 -27.83 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 3 Si 0.88 21.30 27.74 -169.99 -4.71 16.58 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.17 6.52 56.52 0.37 -5.81 16 7 C -0.25 -6.70 10.45 -15.06 -0.16 -6.86 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 9 N -0.73 -16.35 5.11 -52.55 -0.27 -16.62 16 10 C 0.17 3.08 4.57 -67.02 -0.31 2.77 16 11 C -0.15 -2.13 7.39 -25.92 -0.19 -2.32 16 12 C -0.12 -1.62 3.62 -89.81 -0.33 -1.94 16 13 C 0.13 1.62 5.50 -4.04 -0.02 1.59 16 14 N -0.72 -7.96 5.54 -61.42 -0.34 -8.30 16 15 C 0.59 7.52 7.81 -12.57 -0.10 7.42 16 16 O -0.54 -9.11 16.93 5.25 0.09 -9.02 16 17 C -0.22 -2.27 6.14 -104.96 -0.64 -2.92 16 18 C 0.07 0.50 11.44 -16.41 -0.19 0.32 16 19 N -0.52 -3.29 6.01 -9.19 -0.06 -3.35 16 20 H 0.43 1.56 8.96 -40.82 -0.37 1.20 16 21 C 0.05 0.49 7.08 -82.32 -0.58 -0.10 16 22 C 0.25 2.33 8.20 -156.26 -1.28 1.04 16 23 N -0.26 -2.63 12.52 32.09 0.40 -2.22 16 24 N -0.04 -0.34 13.47 60.35 0.81 0.47 16 25 N -0.23 -1.13 7.90 60.35 0.48 -0.66 16 26 H 0.48 0.06 8.96 -340.35 -3.05 -2.99 16 27 N -0.31 -2.21 12.41 32.11 0.40 -1.81 16 28 C -0.06 -0.61 10.59 -39.09 -0.41 -1.03 16 29 C -0.17 -2.49 7.44 -25.82 -0.19 -2.68 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.36 7.92 5.76 -40.82 -0.24 7.68 16 32 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 1.04 8.10 -51.93 -0.42 0.61 16 35 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.88 7.87 -51.93 -0.41 0.47 16 38 H 0.40 3.42 7.39 -40.82 -0.30 3.12 16 39 H 0.19 0.64 7.44 -52.48 -0.39 0.25 16 40 H 0.16 1.76 8.06 -52.48 -0.42 1.34 16 41 H 0.07 1.00 7.92 -51.93 -0.41 0.59 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 365.56 15.07 5.51 5.51 Total: -1.00 -36.63 365.56 -9.13 -45.75 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -7.71 Total: 6.17 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -4.50 Total: -4.67 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: 2.20 Total: -60.32 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.71 Total: 16.58 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.63 -9.13 -45.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581857443.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.318 kcal (2) G-P(sol) polarization free energy of solvation -36.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds