Wall clock time and date at job start Tue Mar 31 2020 16:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00018 * 2 1 4 4 H 1.48495 * 109.46897 * 270.00102 * 3 2 1 5 5 H 1.48504 * 109.46632 * 30.00010 * 3 2 1 6 6 H 1.48493 * 109.47271 * 149.99908 * 3 2 1 7 7 C 1.38817 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00040 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99962 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99663 * 180.02562 * 9 7 2 11 11 C 1.53781 * 113.61255 * 155.00097 * 10 9 7 12 12 C 1.53779 * 87.08584 * 89.11060 * 11 10 9 13 13 C 1.52999 * 113.61263 * 139.97993 * 12 11 10 14 14 N 1.46500 * 109.46757 * 176.53223 * 13 12 11 15 15 C 1.34773 * 120.00138 * 179.97438 * 14 13 12 16 16 O 1.21628 * 119.99977 * 0.02562 * 15 14 13 17 17 C 1.47312 * 120.00357 * 179.97438 * 15 14 13 18 18 C 1.37817 * 126.52615 * 0.03267 * 17 15 14 19 19 N 1.34784 * 108.25396 * 179.97438 * 18 17 15 20 20 H 0.96995 * 125.36699 * 179.73964 * 19 18 17 21 21 C 1.37304 * 109.26792 * 359.97438 * 19 18 17 22 22 C 1.48004 * 125.76275 * 180.02562 * 21 19 18 23 23 N 1.34179 * 126.69917 * 179.71284 * 22 21 19 24 24 N 1.28983 * 107.25822 * 179.86769 * 23 22 21 25 25 N 1.28724 * 108.98165 * 0.39401 * 24 23 22 26 26 H 0.96998 * 125.31920 * 179.76345 * 25 24 23 27 27 N 1.28868 * 109.35552 * 359.74849 * 25 24 23 28 28 C 1.35697 * 108.47581 * 359.97438 * 21 19 18 29 29 C 1.53782 * 87.17070 * 25.38995 * 12 11 10 30 30 H 0.96998 * 120.00179 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00247 * 359.97438 * 9 7 2 32 32 H 1.08991 * 112.85172 * 23.80038 * 10 9 7 33 33 H 1.09005 * 113.61192 * 334.56272 * 11 10 9 34 34 H 1.09003 * 113.61420 * 203.66360 * 11 10 9 35 35 H 1.09004 * 113.61472 * 270.80377 * 12 11 10 36 36 H 1.08996 * 109.47515 * 56.53583 * 13 12 11 37 37 H 1.09000 * 109.46751 * 296.52748 * 13 12 11 38 38 H 0.97000 * 120.00213 * 0.02562 * 14 13 12 39 39 H 1.08004 * 125.87665 * 0.02562 * 18 17 15 40 40 H 1.08004 * 126.47106 * 180.02562 * 28 21 19 41 41 H 1.08995 * 113.61500 * 89.15555 * 29 12 11 42 42 H 1.08996 * 113.61437 * 220.06017 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4704 -2.1375 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4709 0.0011 11 6 5.5263 -2.3657 -0.5938 12 6 6.0125 -2.0237 0.8244 13 6 7.3467 -2.6777 1.1893 14 7 7.7633 -2.2276 2.5197 15 6 8.9169 -2.6768 3.0525 16 8 9.6123 -3.4556 2.4285 17 6 9.3362 -2.2239 4.3900 18 6 8.6568 -1.3492 5.2102 19 7 9.3692 -1.1936 6.3438 20 1 9.1192 -0.6275 7.0907 21 6 10.5071 -1.9586 6.2724 22 6 11.5482 -2.0601 7.3195 23 7 12.6634 -2.8048 7.2719 24 7 13.3004 -2.6109 8.3765 25 7 12.6305 -1.7901 9.1077 26 1 12.8921 -1.4828 9.9897 27 7 11.5582 -1.4403 8.4844 28 6 10.5155 -2.6067 5.0802 29 6 4.7868 -2.7912 1.3474 30 1 -0.4850 0.8400 -0.0004 31 1 3.8647 -0.3621 0.0007 32 1 3.5281 -3.2968 -0.4047 33 1 5.6414 -1.5470 -1.3042 34 1 5.9127 -3.3125 -0.9714 35 1 5.9883 -0.9573 1.0490 36 1 8.1025 -2.3945 0.4568 37 1 7.2312 -3.7615 1.1920 38 1 7.2086 -1.6068 3.0175 39 1 7.7150 -0.8713 4.9840 40 1 11.2765 -3.2852 4.7237 41 1 4.9706 -3.8545 1.5015 42 1 4.3058 -2.3156 2.2020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001581857443.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:14 Heat of formation + Delta-G solvation = 139.154337 kcal Electronic energy + Delta-G solvation = -26241.366853 eV Core-core repulsion = 22260.155763 eV Total energy + Delta-G solvation = -3981.211090 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.52038 -42.39123 -40.55601 -39.58842 -35.98202 -35.46958 -34.90727 -34.43499 -32.72987 -32.32308 -30.54556 -28.59811 -26.38854 -25.70951 -25.52980 -24.92821 -23.91988 -22.85332 -21.79622 -20.82422 -20.33238 -19.95494 -19.48544 -19.20287 -18.22885 -17.36529 -16.97186 -16.48048 -16.36849 -16.01357 -15.74862 -15.39863 -15.24062 -15.06958 -14.83130 -14.62447 -14.51832 -14.28097 -13.93782 -13.37502 -13.36309 -13.28480 -13.01710 -12.96196 -12.63757 -12.49294 -12.26737 -12.13253 -12.08226 -11.83514 -11.57568 -11.50144 -11.04825 -10.89267 -10.73902 -10.21901 -9.88409 -9.24887 -9.22353 -7.98766 -5.32234 -0.12212 0.32908 0.77602 1.32253 1.40526 1.45755 1.52629 1.75202 1.84478 2.30182 2.52147 2.59135 2.75673 3.26582 3.31739 3.57555 3.81280 3.84324 3.95330 4.05727 4.09072 4.15385 4.30951 4.34868 4.36223 4.46600 4.73428 4.80791 4.91293 4.99622 5.00987 5.05840 5.16241 5.35082 5.40724 5.45736 5.54481 5.59292 5.63876 5.64396 5.85589 6.26493 6.35496 6.72930 7.04349 7.12171 7.39823 7.89170 8.08417 9.22743 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.019794 B = 0.001945 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.256864 B =14389.098105 C =15384.304209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.067 4.067 3 Si 0.957 3.043 4 H -0.282 1.282 5 H -0.298 1.298 6 H -0.243 1.243 7 C -0.231 4.231 8 H 0.055 0.945 9 N -0.732 5.732 10 C 0.143 3.857 11 C -0.135 4.135 12 C -0.102 4.102 13 C 0.140 3.860 14 N -0.712 5.712 15 C 0.586 3.414 16 O -0.594 6.594 17 C -0.253 4.253 18 C 0.110 3.890 19 N -0.507 5.507 20 H 0.441 0.559 21 C 0.052 3.948 22 C 0.240 3.760 23 N -0.291 5.291 24 N -0.052 5.052 25 N -0.196 5.196 26 H 0.496 0.504 27 N -0.300 5.300 28 C -0.080 4.080 29 C -0.153 4.153 30 H 0.257 0.743 31 H 0.368 0.632 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.413 0.587 39 H 0.227 0.773 40 H 0.141 0.859 41 H 0.088 0.912 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.886 0.379 20.058 32.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.258 4.258 3 Si 0.784 3.216 4 H -0.209 1.209 5 H -0.225 1.225 6 H -0.167 1.167 7 C -0.362 4.362 8 H 0.073 0.927 9 N -0.374 5.374 10 C 0.034 3.966 11 C -0.175 4.175 12 C -0.121 4.121 13 C 0.016 3.984 14 N -0.363 5.363 15 C 0.375 3.625 16 O -0.476 6.476 17 C -0.263 4.263 18 C -0.033 4.033 19 N -0.102 5.102 20 H 0.283 0.717 21 C -0.060 4.060 22 C -0.040 4.040 23 N -0.163 5.163 24 N -0.047 5.047 25 N -0.047 5.047 26 H 0.355 0.645 27 N -0.153 5.153 28 C -0.108 4.108 29 C -0.193 4.193 30 H 0.066 0.934 31 H 0.201 0.799 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.122 0.878 35 H 0.112 0.888 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.249 0.751 39 H 0.243 0.757 40 H 0.159 0.841 41 H 0.107 0.893 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 26.720 -0.390 20.048 33.407 hybrid contribution -0.629 1.657 0.733 1.918 sum 26.091 1.267 20.780 33.379 Atomic orbital electron populations 1.69896 1.07290 1.26652 1.59791 1.25544 0.96123 1.01418 1.02743 0.85382 0.78897 0.79319 0.77996 1.20882 1.22521 1.16698 1.19064 0.82695 0.93380 1.41070 0.92744 1.42409 1.02140 1.03522 1.89343 1.21395 0.91555 0.87750 0.95898 1.23366 0.95423 1.02885 0.95793 1.22564 0.92282 0.99994 0.97230 1.21281 0.94964 0.98781 0.83380 1.45718 1.22632 1.48625 1.19359 1.17659 0.80381 0.79548 0.84888 1.90757 1.55445 1.37649 1.63751 1.19499 1.00398 1.09498 0.96891 1.22992 0.98115 0.97676 0.84524 1.41514 1.15875 1.35461 1.17323 0.71706 1.16268 0.90116 1.05465 0.94176 1.22570 0.94621 0.95123 0.91638 1.76182 1.05400 1.21215 1.13533 1.78922 1.19605 1.07869 0.98322 1.47724 1.10734 1.27468 1.18811 0.64486 1.74905 1.08875 1.24281 1.07266 1.20947 0.98024 0.99925 0.91942 1.23714 0.96535 1.00166 0.98909 0.93434 0.79868 0.92719 0.91424 0.87817 0.88764 0.91829 0.91831 0.75082 0.75696 0.84089 0.89340 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.09 13.97 21.65 0.30 -61.79 16 2 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 3 Si 0.96 43.35 27.74 68.60 1.90 45.25 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.24 -9.48 6.52 99.48 0.65 -8.83 16 7 C -0.23 -12.73 10.45 84.03 0.88 -11.86 16 8 H 0.05 3.33 8.06 -2.91 -0.02 3.31 16 9 N -0.73 -31.87 5.11 -320.16 -1.64 -33.51 16 10 C 0.14 4.96 4.57 45.58 0.21 5.17 16 11 C -0.14 -3.52 7.39 31.12 0.23 -3.29 16 12 C -0.10 -2.35 3.62 -10.27 -0.04 -2.39 16 13 C 0.14 3.04 5.50 86.38 0.47 3.51 16 14 N -0.71 -13.78 5.54 -466.48 -2.59 -16.36 16 15 C 0.59 14.36 7.81 86.63 0.68 15.03 16 16 O -0.59 -20.07 16.93 -4.12 -0.07 -20.14 16 17 C -0.25 -4.83 6.14 -20.08 -0.12 -4.95 16 18 C 0.11 1.09 11.44 84.14 0.96 2.05 16 19 N -0.51 -4.84 6.01 -183.00 -1.10 -5.94 16 20 H 0.44 1.57 8.96 -92.71 -0.83 0.74 16 21 C 0.05 0.87 7.08 40.29 0.29 1.16 16 22 C 0.24 4.17 8.20 137.16 1.13 5.29 16 23 N -0.29 -5.92 12.52 -52.38 -0.66 -6.58 16 24 N -0.05 -0.79 13.47 37.02 0.50 -0.30 16 25 N -0.20 -1.60 7.90 37.02 0.29 -1.31 16 26 H 0.50 -1.03 8.96 -347.52 -3.12 -4.14 16 27 N -0.30 -3.67 12.41 -52.33 -0.65 -4.32 16 28 C -0.08 -1.70 10.59 22.59 0.24 -1.46 16 29 C -0.15 -4.22 7.44 31.18 0.23 -3.99 16 30 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 31 H 0.37 15.06 5.76 -92.71 -0.53 14.52 16 32 H 0.05 2.04 8.10 -2.39 -0.02 2.03 16 33 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.10 2.29 8.10 -2.39 -0.02 2.27 16 35 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.06 1.49 7.87 -2.39 -0.02 1.47 16 38 H 0.41 5.47 7.39 -92.71 -0.68 4.78 16 39 H 0.23 0.31 7.44 -2.91 -0.02 0.29 16 40 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 41 H 0.09 2.20 7.92 -2.39 -0.02 2.18 16 42 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -83.26 365.56 -2.18 -85.44 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -4.10 Total: 18.65 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 5.62 Total: 0.91 kcal Atomic # 7 Polarization: -124.57 SS G_CDS: -5.54 Total: -130.10 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.07 Total: -20.14 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.90 Total: 45.25 kcal Total: -83.26 -2.18 -85.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581857443.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.594 kcal (2) G-P(sol) polarization free energy of solvation -83.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds