Wall clock time and date at job start Tue Mar 31 2020 17:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47315 * 2 1 4 4 C 1.53003 * 109.47004 * 120.00302 * 2 1 3 5 5 H 1.09002 * 109.47966 * 60.02310 * 4 2 1 6 6 C 1.53093 * 109.47934 * 180.02562 * 4 2 1 7 7 C 1.53181 * 109.16203 * 177.59090 * 6 4 2 8 8 H 1.08993 * 109.54126 * 62.88636 * 7 6 4 9 9 N 1.46495 * 109.54225 * 183.06515 * 7 6 4 10 10 S 1.65596 * 120.00077 * 214.99950 * 9 7 6 11 11 O 1.42100 * 104.28023 * 181.07206 * 10 9 7 12 12 O 1.42102 * 104.27711 * 308.93006 * 10 9 7 13 13 C 1.81403 * 104.45002 * 64.99911 * 10 9 7 14 14 C 1.53001 * 109.47419 * 172.61622 * 13 10 9 15 15 C 1.50705 * 115.54597 * 39.95374 * 14 13 10 16 16 H 1.07999 * 120.00191 * 272.09892 * 15 14 13 17 17 C 1.37881 * 119.99593 * 92.10078 * 15 14 13 18 18 N 1.31510 * 119.99755 * 174.04867 * 17 15 14 19 19 Si 1.86800 * 120.00146 * 354.04079 * 17 15 14 20 20 H 1.48503 * 109.47051 * 93.56773 * 19 17 15 21 21 H 1.48498 * 109.47096 * 213.56640 * 19 17 15 22 22 H 1.48498 * 109.47058 * 333.56861 * 19 17 15 23 23 C 1.52996 * 117.50043 * 254.24858 * 14 13 10 24 24 C 1.52996 * 117.49972 * 185.62368 * 14 13 10 25 25 C 1.53176 * 109.04397 * 303.03073 * 7 6 4 26 26 C 1.53089 * 109.16627 * 56.96177 * 25 7 6 27 27 O 1.42896 * 109.48133 * 299.99855 * 4 2 1 28 28 H 1.09007 * 109.46716 * 300.00329 * 1 2 3 29 29 H 1.09001 * 109.47218 * 59.99311 * 1 2 3 30 30 H 1.08997 * 109.47775 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46721 * 239.99689 * 2 1 3 32 32 H 1.09006 * 109.46787 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47691 * 300.00217 * 3 2 1 34 34 H 1.08997 * 109.47478 * 60.00711 * 3 2 1 35 35 H 1.08993 * 109.52217 * 297.50013 * 6 4 2 36 36 H 1.08997 * 109.51982 * 57.68678 * 6 4 2 37 37 H 0.97006 * 120.00017 * 35.00386 * 9 7 6 38 38 H 1.08995 * 109.47224 * 292.62116 * 13 10 9 39 39 H 1.09010 * 109.46770 * 52.62306 * 13 10 9 40 40 H 0.97003 * 119.99942 * 179.97438 * 18 17 15 41 41 H 1.08999 * 117.49849 * 359.97438 * 23 14 13 42 42 H 1.09000 * 117.49490 * 145.02273 * 23 14 13 43 43 H 1.09005 * 117.49690 * 214.98590 * 24 14 13 44 44 H 1.08992 * 117.49843 * 359.97438 * 24 14 13 45 45 H 1.09007 * 109.51238 * 297.05917 * 25 7 6 46 46 H 1.08999 * 109.53170 * 176.87838 * 25 7 6 47 47 H 1.09001 * 109.48105 * 182.41892 * 26 25 7 48 48 H 1.08994 * 109.48134 * 62.39761 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6771 -1.7492 1.2491 6 6 3.5709 -0.7209 1.2498 7 6 4.0735 -1.3912 2.5322 8 1 3.7512 -2.4322 2.5498 9 7 5.5365 -1.3301 2.5761 10 16 6.3978 -2.5797 3.2387 11 8 7.7532 -2.1666 3.1316 12 8 5.7935 -2.7877 4.5079 13 6 6.0723 -3.9863 2.1405 14 6 6.9621 -5.1641 2.5428 15 6 7.1324 -5.3733 4.0255 16 1 7.9200 -4.8593 4.5565 17 6 6.2826 -6.2209 4.7042 18 7 6.5013 -6.4949 5.9717 19 14 4.8207 -6.9799 3.8233 20 1 5.2011 -8.3130 3.2908 21 1 3.6923 -7.1314 4.7767 22 1 4.4064 -6.0988 2.7020 23 6 8.1552 -5.4883 1.6416 24 6 6.9327 -6.4081 1.6526 25 6 3.4914 -0.6544 3.7424 26 6 1.9636 -0.6572 3.6454 27 8 1.5638 -0.0479 2.4162 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4423 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6769 1.9563 0.8900 35 1 3.9356 -1.2726 0.3834 36 1 3.9348 0.3057 1.2086 37 1 6.0007 -0.5577 2.2171 38 1 5.0251 -4.2772 2.2233 39 1 6.2901 -3.7015 1.1110 40 1 5.9033 -7.0909 6.4492 41 1 8.3060 -4.8627 0.7618 42 1 9.0637 -5.8529 2.1211 43 1 7.0368 -7.3779 2.1394 44 1 6.2791 -6.3876 0.7807 45 1 3.8539 0.3736 3.7518 46 1 3.7991 -1.1584 4.6585 47 1 1.5452 -0.0970 4.4817 48 1 1.5992 -1.6839 3.6771 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000333089247.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:47 Heat of formation + Delta-G solvation = -109.369117 kcal Electronic energy + Delta-G solvation = -28463.917943 eV Core-core repulsion = 24646.328860 eV Total energy + Delta-G solvation = -3817.589083 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.96615 -37.15006 -36.34874 -35.88349 -35.18155 -34.98319 -32.21138 -30.80088 -30.18642 -28.57092 -27.35855 -25.57947 -24.58548 -23.71969 -21.76490 -20.88574 -20.14322 -19.54651 -18.61133 -17.10219 -16.84292 -16.44112 -16.17824 -15.46954 -15.28559 -15.07076 -14.90409 -14.47754 -14.40126 -14.12653 -13.95271 -13.74453 -13.23638 -13.00957 -12.80549 -12.65471 -12.58975 -12.24057 -11.88607 -11.79533 -11.50687 -11.35798 -11.33696 -11.20124 -11.11533 -11.06734 -11.01239 -10.85500 -10.84622 -10.63294 -10.38668 -10.26101 -10.11569 -9.78671 -9.61739 -9.31660 -9.13039 -8.68928 -8.51315 -6.22332 -4.33558 1.01173 3.19335 3.27680 3.30429 3.41739 3.64476 4.30698 4.35571 4.55255 4.56535 4.64687 4.72722 4.80138 4.87205 4.96423 5.00619 5.03463 5.08934 5.13489 5.24408 5.33702 5.46201 5.48981 5.51759 5.54448 5.65022 5.69705 5.70996 5.79005 5.85421 5.87132 5.91116 5.95467 6.02351 6.10742 6.14966 6.15865 6.24620 6.32627 6.37983 6.57443 6.79300 7.03226 7.12664 7.20918 7.55653 8.30345 8.81227 9.39643 10.89192 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015380 B = 0.003998 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.123043 B = 7001.121040 C = 7231.253351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 C -0.146 4.146 4 C 0.095 3.905 5 H 0.060 0.940 6 C -0.159 4.159 7 C 0.154 3.846 8 H 0.082 0.918 9 N -1.131 6.131 10 S 2.626 3.374 11 O -0.967 6.967 12 O -0.933 6.933 13 C -0.585 4.585 14 C 0.010 3.990 15 C -0.536 4.536 16 H 0.087 0.913 17 C 0.102 3.898 18 N -0.872 5.872 19 Si 0.877 3.123 20 H -0.275 1.275 21 H -0.288 1.288 22 H -0.259 1.259 23 C -0.173 4.173 24 C -0.189 4.189 25 C -0.175 4.175 26 C 0.062 3.938 27 O -0.375 6.375 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.410 0.590 38 H 0.119 0.881 39 H 0.107 0.893 40 H 0.269 0.731 41 H 0.076 0.924 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.095 0.905 47 H 0.097 0.903 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.160 12.340 -12.709 20.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 C -0.204 4.204 4 C 0.036 3.964 5 H 0.078 0.922 6 C -0.199 4.199 7 C 0.046 3.954 8 H 0.100 0.900 9 N -0.886 5.886 10 S 2.721 3.279 11 O -0.958 6.958 12 O -0.922 6.922 13 C -0.716 4.716 14 C 0.007 3.993 15 C -0.573 4.573 16 H 0.105 0.895 17 C -0.105 4.105 18 N -0.506 5.506 19 Si 0.704 3.296 20 H -0.201 1.201 21 H -0.215 1.215 22 H -0.184 1.184 23 C -0.210 4.210 24 C -0.227 4.227 25 C -0.215 4.215 26 C -0.015 4.015 27 O -0.294 6.294 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.242 0.758 38 H 0.137 0.863 39 H 0.125 0.875 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.114 0.886 47 H 0.116 0.884 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.893 12.314 -11.658 20.154 hybrid contribution -0.711 -0.815 -1.128 1.563 sum -11.604 11.498 -12.786 20.745 Atomic orbital electron populations 1.21773 0.94618 1.01724 1.02073 1.21141 0.96552 0.97067 0.95757 1.21832 1.00979 0.95560 1.01980 1.22113 0.92132 0.95841 0.86281 0.92202 1.22660 0.96483 1.02743 0.97971 1.20674 0.79944 0.99901 0.94889 0.90020 1.56257 1.14584 1.36841 1.80882 1.04650 0.73427 0.74095 0.75718 1.93505 1.34098 1.80872 1.87281 1.93568 1.77239 1.84951 1.36479 1.30332 1.09554 1.17751 1.13950 1.18740 0.95469 0.90942 0.94149 1.20412 1.18328 1.30652 0.87901 0.89466 1.24922 0.96666 0.94555 0.94403 1.69879 1.37206 1.34159 1.09358 0.86901 0.82739 0.80117 0.79798 1.20137 1.21485 1.18357 1.22966 0.93528 1.03434 1.01087 1.22944 1.01852 0.96250 1.01661 1.22777 0.96068 1.02422 1.00198 1.22592 0.93821 0.98423 0.86672 1.87890 1.74487 1.53713 1.13285 0.91701 0.92903 0.92932 0.90192 0.92517 0.93060 0.91705 0.90252 0.89800 0.75775 0.86297 0.87479 0.92112 0.90582 0.88742 0.88975 0.90704 0.90547 0.88648 0.88446 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.05 37.16 0.34 -0.81 16 2 C -0.09 -0.71 2.81 -90.62 -0.25 -0.97 16 3 C -0.15 -1.17 8.70 37.15 0.32 -0.84 16 4 C 0.09 0.93 2.38 -26.68 -0.06 0.86 16 5 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 6 C -0.16 -1.58 4.66 -26.59 -0.12 -1.71 16 7 C 0.15 1.96 2.64 -67.75 -0.18 1.78 16 8 H 0.08 1.06 7.33 -51.93 -0.38 0.68 16 9 N -1.13 -16.12 5.37 -4.74 -0.03 -16.15 16 10 S 2.63 52.84 4.52 -107.50 -0.49 52.36 16 11 O -0.97 -21.99 18.08 -57.54 -1.04 -23.03 16 12 O -0.93 -22.37 16.45 -57.54 -0.95 -23.32 16 13 C -0.59 -11.22 5.87 37.16 0.22 -11.01 16 14 C 0.01 0.22 1.11 -155.66 -0.17 0.05 16 15 C -0.54 -14.95 7.55 -34.44 -0.26 -15.21 16 16 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 17 C 0.10 2.89 5.46 -17.82 -0.10 2.79 16 18 N -0.87 -26.42 13.96 55.43 0.77 -25.64 16 19 Si 0.88 21.10 24.98 -169.99 -4.25 16.85 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.26 -5.67 5.46 56.52 0.31 -5.36 16 23 C -0.17 -3.51 9.88 -26.73 -0.26 -3.77 16 24 C -0.19 -3.89 7.54 -26.73 -0.20 -4.09 16 25 C -0.18 -2.21 5.75 -26.59 -0.15 -2.37 16 26 C 0.06 0.68 6.84 37.20 0.25 0.93 16 27 O -0.37 -4.11 9.06 -35.23 -0.32 -4.43 16 28 H 0.06 0.57 7.68 -51.92 -0.40 0.17 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.44 6.38 -51.93 -0.33 0.11 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.58 7.68 -51.93 -0.40 0.19 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.78 6.31 -51.93 -0.33 0.46 16 37 H 0.41 4.88 8.80 -34.47 -0.30 4.58 16 38 H 0.12 2.16 6.10 -51.93 -0.32 1.84 16 39 H 0.11 1.64 7.95 -51.92 -0.41 1.23 16 40 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 42 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 43 H 0.09 1.99 7.01 -51.93 -0.36 1.62 16 44 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.10 1.41 7.55 -51.93 -0.39 1.01 16 47 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 379.15 15.07 5.71 5.71 Total: -1.00 -34.04 379.15 -9.56 -43.60 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -8.35 Total: 8.39 kcal Atomic # 6 Polarization: -33.71 SS G_CDS: -0.64 Total: -34.35 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.75 Total: -41.79 kcal Atomic # 8 Polarization: -48.47 SS G_CDS: -2.31 Total: -50.77 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.25 Total: 16.85 kcal Atomic # 16 Polarization: 52.84 SS G_CDS: -0.49 Total: 52.36 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.04 -9.56 -43.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333089247.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.768 kcal (2) G-P(sol) polarization free energy of solvation -34.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds