Wall clock time and date at job start Tue Mar 31 2020 17:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47158 * 2 1 4 4 C 1.52991 * 109.47329 * 120.00376 * 2 1 3 5 5 S 1.81402 * 109.47320 * 65.00009 * 4 2 1 6 6 O 1.42092 * 108.57884 * 65.51290 * 5 4 2 7 7 O 1.42095 * 108.57596 * 294.48538 * 5 4 2 8 8 C 1.81408 * 101.92113 * 179.97438 * 5 4 2 9 9 C 1.52995 * 109.46817 * 179.97438 * 8 5 4 10 10 C 1.50703 * 109.47212 * 179.97438 * 9 8 5 11 11 O 1.21281 * 119.99356 * 0.02562 * 10 9 8 12 12 N 1.34769 * 120.00297 * 180.02562 * 10 9 8 13 13 C 1.46928 * 120.63050 * 359.97438 * 12 10 9 14 14 C 1.53188 * 108.77345 * 126.41497 * 13 12 10 15 15 C 1.53038 * 109.31577 * 54.63596 * 14 13 12 16 16 C 1.53043 * 109.53602 * 298.63148 * 15 14 13 17 17 H 1.08997 * 109.50072 * 301.41544 * 16 15 14 18 18 C 1.50704 * 109.49459 * 181.31479 * 16 15 14 19 19 H 1.08000 * 120.00003 * 245.44703 * 18 16 15 20 20 C 1.37875 * 119.99825 * 65.45480 * 18 16 15 21 21 N 1.31516 * 120.00146 * 9.56915 * 20 18 16 22 22 Si 1.86800 * 119.99969 * 189.57584 * 20 18 16 23 23 H 1.48498 * 109.47500 * 94.98905 * 22 20 18 24 24 H 1.48507 * 109.47110 * 214.99019 * 22 20 18 25 25 H 1.48497 * 109.47091 * 334.98521 * 22 20 18 26 26 C 1.46929 * 120.63205 * 180.02562 * 12 10 9 27 27 H 1.09001 * 109.47793 * 59.99678 * 1 2 3 28 28 H 1.09004 * 109.47172 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47073 * 299.99288 * 1 2 3 30 30 H 1.09007 * 109.46743 * 240.00583 * 2 1 3 31 31 H 1.08993 * 109.47172 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47032 * 300.00789 * 3 2 1 33 33 H 1.08998 * 109.46938 * 60.00026 * 3 2 1 34 34 H 1.09002 * 109.47292 * 304.99912 * 4 2 1 35 35 H 1.09007 * 109.47292 * 184.99810 * 4 2 1 36 36 H 1.09002 * 109.46884 * 60.00087 * 8 5 4 37 37 H 1.08992 * 109.47214 * 300.00051 * 8 5 4 38 38 H 1.09002 * 109.47051 * 60.00521 * 9 8 5 39 39 H 1.09001 * 109.47421 * 299.99978 * 9 8 5 40 40 H 1.09000 * 109.58720 * 246.19939 * 13 12 10 41 41 H 1.09000 * 109.58609 * 6.47938 * 13 12 10 42 42 H 1.09000 * 109.50240 * 294.67907 * 14 13 12 43 43 H 1.09001 * 109.49471 * 174.58659 * 14 13 12 44 44 H 1.09001 * 109.46070 * 178.61064 * 15 14 13 45 45 H 1.09001 * 109.46140 * 58.65145 * 15 14 13 46 46 H 0.97002 * 119.99918 * 179.97438 * 21 20 18 47 47 H 1.08998 * 109.58964 * 113.79614 * 26 12 10 48 48 H 1.09006 * 109.58709 * 353.36909 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 16 1.5602 -2.4692 1.1764 6 8 2.2381 -3.0798 0.0872 7 8 0.1434 -2.5530 1.2467 8 6 2.2553 -3.1133 2.7233 9 6 1.9435 -4.6066 2.8396 10 6 2.5216 -5.1419 4.1243 11 8 3.1232 -4.4016 4.8733 12 7 2.3699 -6.4430 4.4409 13 6 1.6431 -7.3519 3.5440 14 6 2.5354 -8.5584 3.2359 15 6 2.9892 -9.2008 4.5487 16 6 3.8057 -8.1902 5.3576 17 1 4.6662 -7.8660 4.7723 18 6 4.2793 -8.8339 6.6353 19 1 3.9168 -8.4751 7.5873 20 6 5.1755 -9.8806 6.5889 21 7 5.7607 -10.1954 5.4540 22 14 5.5583 -10.8518 8.1380 23 1 4.6947 -12.0585 8.1919 24 1 6.9849 -11.2642 8.1238 25 1 5.3000 -10.0045 9.3299 26 6 2.9273 -6.9794 5.6901 27 1 -0.3635 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 3.1299 1.4425 -0.0005 32 1 1.6765 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6054 -0.2618 2.1369 35 1 3.1264 -0.6444 1.2950 36 1 1.8147 -2.5835 3.5679 37 1 3.3353 -2.9660 2.7253 38 1 2.3838 -5.1366 1.9950 39 1 0.8635 -4.7535 2.8377 40 1 0.7273 -7.6893 4.0294 41 1 1.3959 -6.8317 2.6186 42 1 3.4078 -8.2308 2.6705 43 1 1.9738 -9.2860 2.6499 44 1 3.6041 -10.0743 4.3321 45 1 2.1155 -9.5058 5.1248 46 1 6.3915 -10.9316 5.4214 47 1 2.1160 -7.2864 6.3501 48 1 3.5297 -6.2142 6.1797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597914145.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:19 Heat of formation + Delta-G solvation = -130.587641 kcal Electronic energy + Delta-G solvation = -26921.879126 eV Core-core repulsion = 23103.369939 eV Total energy + Delta-G solvation = -3818.509187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.77995 -37.26347 -36.94869 -36.85462 -36.13149 -33.68091 -33.09722 -31.45678 -30.23360 -28.46385 -27.59676 -26.01084 -25.04418 -23.68435 -21.74543 -20.93117 -19.87592 -19.13977 -18.43454 -17.59343 -16.82050 -16.59405 -16.27662 -15.82821 -15.62626 -15.29525 -15.04512 -14.60767 -14.29791 -13.82122 -13.70306 -13.59850 -13.27379 -12.99983 -12.91434 -12.77394 -12.59186 -12.47019 -12.46103 -12.21631 -12.17164 -12.04485 -11.81651 -11.60070 -11.45202 -11.30173 -11.12666 -11.04457 -10.87401 -10.80090 -10.47177 -10.36972 -10.09149 -9.81916 -9.58548 -9.39104 -8.90035 -8.39671 -7.99341 -6.08169 -4.10672 -0.31109 2.47120 2.89695 3.18193 3.27581 3.35248 3.38169 3.52112 3.73471 4.06739 4.26074 4.28037 4.40637 4.52335 4.59617 4.71277 4.84600 5.05072 5.10937 5.13649 5.23394 5.24036 5.31601 5.37255 5.41441 5.49058 5.55109 5.58989 5.64465 5.71503 5.77873 5.93668 6.03906 6.25940 6.32031 6.38620 6.58716 6.71797 6.87889 7.06950 7.20445 7.63960 7.81698 7.91602 7.93816 8.31260 8.51199 8.92996 9.53081 11.00843 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.030919 B = 0.002276 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.364232 B =12300.066313 C =12582.468066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.084 4.084 3 C -0.141 4.141 4 C -0.609 4.609 5 S 2.413 3.587 6 O -0.936 6.936 7 O -0.934 6.934 8 C -0.592 4.592 9 C -0.134 4.134 10 C 0.517 3.483 11 O -0.549 6.549 12 N -0.601 5.601 13 C 0.105 3.895 14 C -0.136 4.136 15 C -0.106 4.106 16 C 0.038 3.962 17 H 0.037 0.963 18 C -0.518 4.518 19 H 0.057 0.943 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.890 3.110 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.273 1.273 26 C 0.117 3.883 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.039 0.961 46 H 0.261 0.739 47 H 0.056 0.944 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.321 18.069 -11.458 23.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.103 4.103 3 C -0.200 4.200 4 C -0.738 4.738 5 S 2.597 3.403 6 O -0.933 6.933 7 O -0.931 6.931 8 C -0.722 4.722 9 C -0.175 4.175 10 C 0.303 3.697 11 O -0.427 6.427 12 N -0.333 5.333 13 C -0.018 4.018 14 C -0.175 4.175 15 C -0.145 4.145 16 C 0.019 3.981 17 H 0.055 0.945 18 C -0.556 4.556 19 H 0.076 0.924 20 C -0.137 4.137 21 N -0.524 5.524 22 Si 0.718 3.282 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.198 1.198 26 C -0.004 4.004 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.096 0.904 45 H 0.058 0.942 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.351 17.869 -11.782 23.775 hybrid contribution 0.798 -0.282 1.475 1.701 sum -9.553 17.587 -10.306 22.512 Atomic orbital electron populations 1.22366 0.93781 1.04846 1.03048 1.20847 0.96826 0.97736 0.94896 1.21811 1.01268 0.94496 1.02375 1.30401 1.12147 1.23673 1.07553 1.08215 0.76295 0.78233 0.77588 1.93600 1.76138 1.74043 1.49542 1.93565 1.27333 1.85657 1.86583 1.30107 1.14634 1.05603 1.21818 1.21397 1.03784 0.92642 0.99680 1.20055 0.80363 0.82268 0.87039 1.90657 1.42841 1.57063 1.52178 1.48316 1.54263 1.07617 1.23108 1.21815 0.95172 0.91814 0.93026 1.22005 0.98970 0.96122 1.00367 1.21573 0.99014 1.00999 0.92872 1.19007 0.93175 0.89738 0.96225 0.94493 1.21029 1.25915 1.16492 0.92192 0.92438 1.24939 0.95176 0.97462 0.96089 1.69973 1.27817 1.29013 1.25568 0.86610 0.77474 0.80455 0.83663 1.20674 1.21296 1.19825 1.22056 0.97247 0.98003 0.83107 0.91526 0.89916 0.91657 0.89594 0.92227 0.91951 0.92200 0.84720 0.84717 0.84269 0.84192 0.87383 0.87517 0.91487 0.90941 0.92059 0.92163 0.90448 0.94205 0.92945 0.92576 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.34 8.83 37.16 0.33 -1.01 16 2 C -0.08 -0.57 2.92 -90.62 -0.26 -0.84 16 3 C -0.14 -0.77 9.19 37.16 0.34 -0.43 16 4 C -0.61 -3.69 5.26 37.15 0.20 -3.50 16 5 S 2.41 21.64 4.51 -107.50 -0.49 21.16 16 6 O -0.94 -11.54 18.10 -57.83 -1.05 -12.59 16 7 O -0.93 -10.52 15.46 -57.83 -0.89 -11.41 16 8 C -0.59 -5.75 5.09 37.16 0.19 -5.56 16 9 C -0.13 -1.64 4.05 -27.88 -0.11 -1.76 16 10 C 0.52 8.84 7.70 -10.99 -0.08 8.75 16 11 O -0.55 -11.07 15.39 5.56 0.09 -10.98 16 12 N -0.60 -10.76 2.97 -172.74 -0.51 -11.27 16 13 C 0.10 1.56 6.34 -3.71 -0.02 1.53 16 14 C -0.14 -2.33 6.08 -26.61 -0.16 -2.49 16 15 C -0.11 -2.30 5.02 -26.69 -0.13 -2.44 16 16 C 0.04 0.91 2.12 -91.62 -0.19 0.72 16 17 H 0.04 1.01 8.09 -51.93 -0.42 0.59 16 18 C -0.52 -13.85 8.48 -34.44 -0.29 -14.14 16 19 H 0.06 1.52 7.77 -52.49 -0.41 1.11 16 20 C 0.07 1.78 5.19 -17.82 -0.09 1.69 16 21 N -0.89 -24.96 12.17 55.43 0.67 -24.29 16 22 Si 0.89 20.93 29.55 -169.99 -5.02 15.91 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 26 C 0.12 2.46 5.66 -3.69 -0.02 2.44 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.73 5.40 -51.93 -0.28 0.45 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.13 0.56 8.14 -51.92 -0.42 0.13 16 35 H 0.13 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.14 1.17 8.10 -51.92 -0.42 0.75 16 37 H 0.14 1.28 8.10 -51.93 -0.42 0.86 16 38 H 0.11 1.20 7.69 -51.93 -0.40 0.80 16 39 H 0.11 1.08 7.94 -51.93 -0.41 0.66 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.07 0.85 5.93 -51.93 -0.31 0.54 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.08 1.90 6.88 -51.93 -0.36 1.54 16 45 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 47 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.08 1.84 7.01 -51.93 -0.36 1.47 16 LS Contribution 388.47 15.07 5.85 5.85 Total: -1.00 -34.71 388.47 -10.09 -44.80 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -8.42 Total: -0.15 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -0.33 Total: -17.04 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.16 Total: -35.56 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -1.86 Total: -34.98 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 21.64 SS G_CDS: -0.49 Total: 21.16 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.71 -10.09 -44.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597914145.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.784 kcal (2) G-P(sol) polarization free energy of solvation -34.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds