Wall clock time and date at job start Tue Mar 31 2020 17:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47158 * 2 1 4 4 C 1.52991 * 109.47329 * 120.00376 * 2 1 3 5 5 S 1.81402 * 109.47320 * 65.00009 * 4 2 1 6 6 O 1.42092 * 108.57884 * 65.51290 * 5 4 2 7 7 O 1.42095 * 108.57596 * 294.48538 * 5 4 2 8 8 C 1.81408 * 101.92113 * 179.97438 * 5 4 2 9 9 C 1.52995 * 109.46817 * 179.97438 * 8 5 4 10 10 C 1.50703 * 109.47212 * 179.97438 * 9 8 5 11 11 O 1.21281 * 119.99356 * 0.02562 * 10 9 8 12 12 N 1.34769 * 120.00297 * 180.02562 * 10 9 8 13 13 C 1.46928 * 120.63050 * 359.97438 * 12 10 9 14 14 C 1.53188 * 108.77345 * 126.41497 * 13 12 10 15 15 C 1.53038 * 109.31577 * 54.63596 * 14 13 12 16 16 C 1.53043 * 109.53602 * 298.63148 * 15 14 13 17 17 H 1.08997 * 109.50072 * 301.41544 * 16 15 14 18 18 C 1.50704 * 109.49459 * 181.31479 * 16 15 14 19 19 H 1.08000 * 120.00003 * 245.44703 * 18 16 15 20 20 C 1.37875 * 119.99825 * 65.45480 * 18 16 15 21 21 N 1.31516 * 120.00146 * 9.56915 * 20 18 16 22 22 Si 1.86800 * 119.99969 * 189.57584 * 20 18 16 23 23 H 1.48498 * 109.47500 * 94.98905 * 22 20 18 24 24 H 1.48507 * 109.47110 * 214.99019 * 22 20 18 25 25 H 1.48497 * 109.47091 * 334.98521 * 22 20 18 26 26 C 1.46929 * 120.63205 * 180.02562 * 12 10 9 27 27 H 1.09001 * 109.47793 * 59.99678 * 1 2 3 28 28 H 1.09004 * 109.47172 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47073 * 299.99288 * 1 2 3 30 30 H 1.09007 * 109.46743 * 240.00583 * 2 1 3 31 31 H 1.08993 * 109.47172 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47032 * 300.00789 * 3 2 1 33 33 H 1.08998 * 109.46938 * 60.00026 * 3 2 1 34 34 H 1.09002 * 109.47292 * 304.99912 * 4 2 1 35 35 H 1.09007 * 109.47292 * 184.99810 * 4 2 1 36 36 H 1.09002 * 109.46884 * 60.00087 * 8 5 4 37 37 H 1.08992 * 109.47214 * 300.00051 * 8 5 4 38 38 H 1.09002 * 109.47051 * 60.00521 * 9 8 5 39 39 H 1.09001 * 109.47421 * 299.99978 * 9 8 5 40 40 H 1.09000 * 109.58720 * 246.19939 * 13 12 10 41 41 H 1.09000 * 109.58609 * 6.47938 * 13 12 10 42 42 H 1.09000 * 109.50240 * 294.67907 * 14 13 12 43 43 H 1.09001 * 109.49471 * 174.58659 * 14 13 12 44 44 H 1.09001 * 109.46070 * 178.61064 * 15 14 13 45 45 H 1.09001 * 109.46140 * 58.65145 * 15 14 13 46 46 H 0.97002 * 119.99918 * 179.97438 * 21 20 18 47 47 H 1.08998 * 109.58964 * 113.79614 * 26 12 10 48 48 H 1.09006 * 109.58709 * 353.36909 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 16 1.5602 -2.4692 1.1764 6 8 2.2381 -3.0798 0.0872 7 8 0.1434 -2.5530 1.2467 8 6 2.2553 -3.1133 2.7233 9 6 1.9435 -4.6066 2.8396 10 6 2.5216 -5.1419 4.1243 11 8 3.1232 -4.4016 4.8733 12 7 2.3699 -6.4430 4.4409 13 6 1.6431 -7.3519 3.5440 14 6 2.5354 -8.5584 3.2359 15 6 2.9892 -9.2008 4.5487 16 6 3.8057 -8.1902 5.3576 17 1 4.6662 -7.8660 4.7723 18 6 4.2793 -8.8339 6.6353 19 1 3.9168 -8.4751 7.5873 20 6 5.1755 -9.8806 6.5889 21 7 5.7607 -10.1954 5.4540 22 14 5.5583 -10.8518 8.1380 23 1 4.6947 -12.0585 8.1919 24 1 6.9849 -11.2642 8.1238 25 1 5.3000 -10.0045 9.3299 26 6 2.9273 -6.9794 5.6901 27 1 -0.3635 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 3.1299 1.4425 -0.0005 32 1 1.6765 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6054 -0.2618 2.1369 35 1 3.1264 -0.6444 1.2950 36 1 1.8147 -2.5835 3.5679 37 1 3.3353 -2.9660 2.7253 38 1 2.3838 -5.1366 1.9950 39 1 0.8635 -4.7535 2.8377 40 1 0.7273 -7.6893 4.0294 41 1 1.3959 -6.8317 2.6186 42 1 3.4078 -8.2308 2.6705 43 1 1.9738 -9.2860 2.6499 44 1 3.6041 -10.0743 4.3321 45 1 2.1155 -9.5058 5.1248 46 1 6.3915 -10.9316 5.4214 47 1 2.1160 -7.2864 6.3501 48 1 3.5297 -6.2142 6.1797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597914145.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:16 Heat of formation + Delta-G solvation = -153.950112 kcal Electronic energy + Delta-G solvation = -26922.892199 eV Core-core repulsion = 23103.369939 eV Total energy + Delta-G solvation = -3819.522260 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.17528 -38.48849 -38.03282 -37.44497 -36.84610 -35.39070 -34.25504 -33.08320 -31.90949 -29.00362 -28.06524 -27.44144 -26.68973 -25.00655 -23.34107 -21.68005 -21.23460 -19.89887 -19.78136 -18.78590 -18.21847 -17.59995 -17.36572 -16.88093 -16.70465 -16.55440 -16.39305 -15.68625 -15.16869 -15.03480 -14.96530 -14.72075 -14.49881 -14.31233 -14.17470 -13.70231 -13.63894 -13.55021 -13.41610 -13.14875 -13.01466 -12.98193 -12.88467 -12.72215 -12.61284 -12.49977 -12.40363 -12.00085 -11.95910 -11.91785 -11.86529 -11.72657 -11.59503 -11.33208 -11.12904 -10.91673 -10.67502 -10.46940 -9.51999 -8.16703 -6.26225 -1.00042 1.39785 1.40977 1.51133 1.57853 1.81583 2.04495 2.42524 2.63932 3.09282 3.13622 3.36316 3.53867 3.63075 3.74164 3.87356 4.04440 4.05896 4.20182 4.30539 4.36203 4.37423 4.49899 4.53817 4.58508 4.60422 4.68760 4.79002 4.82180 4.83108 4.86322 4.95480 4.95718 5.02130 5.08307 5.21413 5.26560 5.36958 5.41178 5.41340 5.52292 5.60448 5.90493 5.99681 6.30317 6.50580 6.84022 7.14422 7.40842 8.91715 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.030919 B = 0.002276 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.364232 B =12300.066313 C =12582.468066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.092 4.092 3 C -0.141 4.141 4 C -0.594 4.594 5 S 2.427 3.573 6 O -0.974 6.974 7 O -0.959 6.959 8 C -0.597 4.597 9 C -0.138 4.138 10 C 0.510 3.490 11 O -0.586 6.586 12 N -0.609 5.609 13 C 0.103 3.897 14 C -0.130 4.130 15 C -0.100 4.100 16 C 0.038 3.962 17 H -0.009 1.009 18 C -0.538 4.538 19 H 0.054 0.946 20 C 0.017 3.983 21 N -0.916 5.916 22 Si 0.954 3.046 23 H -0.272 1.272 24 H -0.286 1.286 25 H -0.269 1.269 26 C 0.129 3.871 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.152 0.848 37 H 0.143 0.857 38 H 0.121 0.879 39 H 0.134 0.866 40 H 0.089 0.911 41 H 0.113 0.887 42 H 0.045 0.955 43 H 0.093 0.907 44 H 0.042 0.958 45 H 0.046 0.954 46 H 0.261 0.739 47 H 0.065 0.935 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.879 19.409 -11.909 25.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.112 4.112 3 C -0.200 4.200 4 C -0.726 4.726 5 S 2.614 3.386 6 O -0.971 6.971 7 O -0.956 6.956 8 C -0.725 4.725 9 C -0.178 4.178 10 C 0.298 3.702 11 O -0.468 6.468 12 N -0.340 5.340 13 C -0.019 4.019 14 C -0.168 4.168 15 C -0.138 4.138 16 C 0.019 3.981 17 H 0.009 0.991 18 C -0.576 4.576 19 H 0.072 0.928 20 C -0.183 4.183 21 N -0.555 5.555 22 Si 0.779 3.221 23 H -0.197 1.197 24 H -0.212 1.212 25 H -0.193 1.193 26 C 0.007 3.993 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.179 0.821 35 H 0.176 0.824 36 H 0.170 0.830 37 H 0.161 0.839 38 H 0.139 0.861 39 H 0.152 0.848 40 H 0.107 0.893 41 H 0.131 0.869 42 H 0.064 0.936 43 H 0.111 0.889 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.083 0.917 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.939 19.169 -12.247 25.690 hybrid contribution 1.312 -0.612 1.606 2.162 sum -10.627 18.557 -10.642 23.886 Atomic orbital electron populations 1.22422 0.94291 1.03930 1.04006 1.20955 0.96557 0.98744 0.94950 1.21828 1.01666 0.93381 1.03092 1.30299 1.13914 1.19831 1.08579 1.07678 0.75225 0.79331 0.76340 1.93550 1.76597 1.76010 1.50952 1.93533 1.28773 1.86659 1.86614 1.30177 1.15198 1.04197 1.22976 1.21526 1.05196 0.94260 0.96804 1.20922 0.79511 0.81569 0.88169 1.90631 1.44423 1.57928 1.53773 1.48388 1.54464 1.08665 1.22478 1.22078 0.94724 0.90634 0.94444 1.21930 0.99360 0.97730 0.97814 1.21380 0.98132 0.99179 0.95124 1.18911 0.92628 0.91552 0.95039 0.99088 1.21419 1.26166 1.16875 0.93145 0.92757 1.25711 0.95131 0.98389 0.99025 1.70098 1.28403 1.29489 1.27501 0.85613 0.77230 0.79159 0.80086 1.19699 1.21190 1.19345 1.21596 0.96768 0.95993 0.84976 0.90682 0.91696 0.90770 0.90126 0.91644 0.91429 0.91412 0.82112 0.82407 0.82977 0.83873 0.86135 0.84833 0.89266 0.86888 0.93620 0.88887 0.93947 0.93512 0.92959 0.91683 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.42 8.83 71.98 0.64 -1.79 16 2 C -0.09 -1.05 2.92 -10.80 -0.03 -1.08 16 3 C -0.14 -1.16 9.19 71.98 0.66 -0.50 16 4 C -0.59 -5.51 5.26 71.98 0.38 -5.13 16 5 S 2.43 39.19 4.51 -56.49 -0.25 38.94 16 6 O -0.97 -22.98 18.10 -127.37 -2.30 -25.28 16 7 O -0.96 -20.03 15.46 -127.37 -1.97 -22.00 16 8 C -0.60 -10.46 5.09 71.98 0.37 -10.09 16 9 C -0.14 -3.08 4.05 29.85 0.12 -2.96 16 10 C 0.51 17.02 7.70 87.66 0.67 17.69 16 11 O -0.59 -23.80 15.39 -3.03 -0.05 -23.85 16 12 N -0.61 -21.32 2.97 -818.81 -2.43 -23.76 16 13 C 0.10 2.78 6.34 86.36 0.55 3.33 16 14 C -0.13 -4.29 6.08 30.67 0.19 -4.10 16 15 C -0.10 -4.38 5.02 30.62 0.15 -4.23 16 16 C 0.04 1.90 2.12 -11.44 -0.02 1.88 16 17 H -0.01 -0.53 8.09 -2.39 -0.02 -0.55 16 18 C -0.54 -29.67 8.48 25.60 0.22 -29.46 16 19 H 0.05 2.95 7.77 -2.91 -0.02 2.93 16 20 C 0.02 0.93 5.19 84.65 0.44 1.37 16 21 N -0.92 -53.35 12.17 21.45 0.26 -53.09 16 22 Si 0.95 43.60 29.55 68.60 2.03 45.62 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 24 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 26 C 0.13 5.57 5.66 86.38 0.49 6.06 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 1.08 5.40 -2.38 -0.01 1.07 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.16 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.16 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.15 2.24 8.10 -2.39 -0.02 2.22 16 37 H 0.14 2.41 8.10 -2.39 -0.02 2.39 16 38 H 0.12 2.41 7.69 -2.39 -0.02 2.39 16 39 H 0.13 2.26 7.94 -2.39 -0.02 2.24 16 40 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.11 2.19 5.93 -2.39 -0.01 2.18 16 42 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.04 2.13 6.88 -2.39 -0.02 2.12 16 45 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 47 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 48 H 0.05 2.62 7.01 -2.38 -0.02 2.61 16 Total: -1.00 -78.86 388.47 1.02 -77.85 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.92 Total: 14.56 kcal Atomic # 6 Polarization: -33.81 SS G_CDS: 4.82 Total: -29.00 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -2.17 Total: -76.85 kcal Atomic # 8 Polarization: -66.81 SS G_CDS: -4.32 Total: -71.13 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 39.19 SS G_CDS: -0.25 Total: 38.94 kcal Total: -78.86 1.02 -77.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597914145.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.104 kcal (2) G-P(sol) polarization free energy of solvation -78.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds