Wall clock time and date at job start Tue Mar 31 2020 17:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35956 * 117.00142 * 2 1 4 4 C 1.38079 * 119.99817 * 359.97438 * 3 2 1 5 5 C 1.39976 * 119.83707 * 179.97438 * 4 3 2 6 6 C 1.46971 * 120.07904 * 180.02562 * 5 4 3 7 7 C 1.35027 * 120.00265 * 179.97438 * 6 5 4 8 8 C 1.46245 * 120.00068 * 179.97438 * 7 6 5 9 9 O 1.21730 * 120.00331 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00347 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00653 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.46761 * 324.99586 * 11 10 8 13 13 C 1.52998 * 109.47326 * 84.99317 * 11 10 8 14 14 C 1.53005 * 109.47346 * 204.99866 * 11 10 8 15 15 C 1.52998 * 117.49792 * 179.97438 * 14 11 10 16 16 C 1.52994 * 117.49906 * 111.37200 * 14 11 10 17 17 C 1.40029 * 119.84447 * 0.27718 * 5 4 3 18 18 C 1.37652 * 119.99905 * 359.44320 * 17 5 4 19 19 C 1.39056 * 120.15825 * 0.55773 * 18 17 5 20 20 O 1.35613 * 119.91881 * 179.73653 * 19 18 17 21 21 C 1.34760 * 117.00236 * 354.38788 * 20 19 18 22 22 H 1.07997 * 119.99611 * 5.05965 * 21 20 19 23 23 C 1.38704 * 120.00031 * 185.06459 * 21 20 19 24 24 N 1.31513 * 120.00079 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99806 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47148 * 89.99595 * 25 23 21 27 27 H 1.48498 * 109.46903 * 209.99725 * 25 23 21 28 28 H 1.48494 * 109.47249 * 329.99213 * 25 23 21 29 29 H 1.08999 * 109.46881 * 60.00450 * 1 2 3 30 30 H 1.08996 * 109.47155 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47578 * 300.00456 * 1 2 3 32 32 H 1.07997 * 120.08056 * 359.95969 * 4 3 2 33 33 H 1.08003 * 119.99988 * 359.97438 * 6 5 4 34 34 H 1.08003 * 119.99747 * 0.02562 * 7 6 5 35 35 H 0.96999 * 119.99866 * 359.97438 * 10 8 7 36 36 H 1.09006 * 109.46702 * 60.00642 * 13 11 10 37 37 H 1.08999 * 109.47536 * 179.97438 * 13 11 10 38 38 H 1.08995 * 109.47447 * 300.00868 * 13 11 10 39 39 H 1.09002 * 115.55620 * 325.68555 * 14 11 10 40 40 H 1.09006 * 117.49670 * 145.01745 * 15 14 11 41 41 H 1.08994 * 117.49848 * 0.02562 * 15 14 11 42 42 H 1.09007 * 117.49922 * 0.02562 * 16 14 11 43 43 H 1.08993 * 117.50334 * 214.97644 * 16 14 11 44 44 H 1.07998 * 120.00014 * 179.70545 * 17 5 4 45 45 H 1.07998 * 119.91730 * 180.27686 * 18 17 5 46 46 H 0.97001 * 120.00093 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2942 2.3694 -0.0005 5 6 1.9332 3.6148 0.0000 6 6 1.1379 4.8507 0.0000 7 6 1.7559 6.0513 0.0011 8 6 0.9646 7.2811 0.0005 9 8 -0.2513 7.2225 -0.0004 10 7 1.5814 8.4794 0.0010 11 6 0.7887 9.7114 0.0010 12 1 -0.1156 9.5616 -0.5889 13 6 0.4063 10.0719 1.4379 14 6 1.6124 10.8479 -0.6080 15 6 0.9553 12.2266 -0.6987 16 6 1.1660 11.3952 -1.9652 17 6 3.3319 3.6803 -0.0048 18 6 4.0752 2.5217 0.0016 19 6 3.4405 1.2845 0.0010 20 8 4.1776 0.1461 0.0019 21 6 5.5133 0.2820 -0.1141 22 1 5.9573 1.2664 -0.1201 23 6 6.3176 -0.8424 -0.2260 24 7 5.7768 -2.0412 -0.2184 25 14 8.1691 -0.6540 -0.3876 26 1 8.7862 -0.6521 0.9630 27 1 8.7145 -1.7856 -1.1795 28 1 8.4783 0.6254 -1.0750 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.2156 2.3144 -0.0016 33 1 0.0591 4.7988 -0.0008 34 1 2.8347 6.1032 0.0015 35 1 2.5502 8.5262 0.0022 36 1 1.3106 10.2218 2.0278 37 1 -0.1831 10.9888 1.4380 38 1 -0.1804 9.2623 1.8718 39 1 2.6831 10.8127 -0.4069 40 1 1.5937 13.0987 -0.5570 41 1 -0.0636 12.3241 -0.3242 42 1 0.2852 10.9459 -2.4241 43 1 1.9430 11.7202 -2.6571 44 1 3.8275 4.6398 -0.0092 45 1 5.1539 2.5738 0.0024 46 1 6.3394 -2.8276 -0.2962 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008357031.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:12 Heat of formation + Delta-G solvation = -36.733057 kcal Electronic energy + Delta-G solvation = -26732.179282 eV Core-core repulsion = 22782.295983 eV Total energy + Delta-G solvation = -3949.883298 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.91380 -39.64470 -37.97592 -37.67722 -36.54526 -34.42262 -33.05468 -32.26513 -30.47115 -29.72249 -28.53867 -26.58804 -25.61552 -24.82114 -23.13141 -22.65042 -21.78445 -20.88302 -20.67972 -19.12424 -18.21392 -17.76480 -17.09156 -16.78350 -16.01705 -15.42212 -15.21135 -14.88304 -14.82598 -14.77530 -14.61799 -14.04778 -13.98770 -13.67013 -13.59335 -13.45499 -13.37940 -12.61767 -12.41051 -12.28948 -12.15356 -11.81345 -11.78170 -11.71310 -11.45421 -11.14594 -11.11722 -11.04302 -10.85610 -10.78950 -10.70070 -10.51198 -10.48529 -9.77151 -9.58655 -9.42667 -9.11463 -8.83117 -7.98933 -6.91979 -6.62370 -4.13746 1.02535 2.10605 2.53648 3.04332 3.05448 3.10032 3.10367 3.48189 3.60076 3.82418 3.93903 4.25448 4.46293 4.54111 4.61969 4.83883 4.89435 4.95724 5.00909 5.13585 5.21833 5.22303 5.26519 5.40667 5.45398 5.52593 5.54191 5.56964 5.60432 5.66832 5.70886 5.74835 5.82717 5.86435 5.99432 6.02508 6.20020 6.39608 6.43709 6.50093 6.59398 6.84117 6.99998 7.08093 7.25430 7.46346 7.57573 7.78120 8.07082 8.35954 8.80694 9.49615 10.53447 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014636 B = 0.002165 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.607670 B =12926.987665 C =14515.838886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.052 3.948 4 C -0.136 4.136 5 C -0.166 4.166 6 C 0.035 3.965 7 C -0.278 4.278 8 C 0.557 3.443 9 O -0.560 6.560 10 N -0.727 5.727 11 C 0.174 3.826 12 H 0.086 0.914 13 C -0.160 4.160 14 C -0.164 4.164 15 C -0.171 4.171 16 C -0.177 4.177 17 C -0.059 4.059 18 C -0.225 4.225 19 C 0.148 3.852 20 O -0.147 6.147 21 C -0.391 4.391 22 H 0.097 0.903 23 C 0.041 3.959 24 N -0.845 5.845 25 Si 0.945 3.055 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.265 1.265 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.399 0.601 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.108 0.892 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.116 0.884 45 H 0.137 0.863 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.429 20.528 -0.140 21.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.007 3.993 4 C -0.156 4.156 5 C -0.168 4.168 6 C 0.015 3.985 7 C -0.299 4.299 8 C 0.349 3.651 9 O -0.441 6.441 10 N -0.378 5.378 11 C 0.069 3.931 12 H 0.104 0.896 13 C -0.218 4.218 14 C -0.183 4.183 15 C -0.208 4.208 16 C -0.214 4.214 17 C -0.078 4.078 18 C -0.245 4.245 19 C 0.092 3.908 20 O -0.048 6.048 21 C -0.466 4.466 22 H 0.115 0.885 23 C -0.166 4.166 24 N -0.477 5.477 25 Si 0.769 3.231 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.189 1.189 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.234 0.766 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.126 0.874 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.134 0.866 45 H 0.155 0.845 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.166 19.758 -0.145 21.018 hybrid contribution 1.256 0.342 -0.069 1.304 sum -5.910 20.100 -0.213 20.952 Atomic orbital electron populations 1.22916 0.80168 1.03072 1.00425 1.86235 1.19574 1.26198 1.89716 1.18048 0.89379 0.84610 1.07298 1.20884 0.98605 0.90926 1.05146 1.18174 0.92783 0.91416 1.14384 1.22232 0.99113 0.90965 0.86160 1.22464 0.99821 0.91658 1.15983 1.18402 0.87667 0.83909 0.75142 1.90767 1.14257 1.87731 1.51321 1.45898 1.10054 1.05211 1.76621 1.20392 0.94022 0.82183 0.96534 0.89579 1.22144 1.01723 1.01789 0.96190 1.22493 0.99899 0.94864 1.01031 1.22931 1.02163 0.93785 1.01942 1.23053 1.03569 1.03904 0.90854 1.20931 0.92498 0.97354 0.96994 1.20833 1.00708 0.90749 1.12165 1.18883 0.88275 0.87655 0.96025 1.83988 1.19715 1.25845 1.75261 1.21513 0.78373 0.95073 1.51654 0.88522 1.25415 1.00902 0.94154 0.96111 1.70044 1.36649 0.97825 1.43136 0.85645 0.79886 0.78697 0.78869 1.19633 1.20054 1.18930 0.93437 0.88965 0.93443 0.85854 0.86006 0.85810 0.76644 0.92417 0.91822 0.91927 0.87358 0.88551 0.88493 0.88569 0.88651 0.86611 0.84516 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.81 101.05 0.99 1.43 16 2 O -0.30 -6.47 10.28 -34.21 -0.35 -6.82 16 3 C 0.05 1.11 6.70 -39.12 -0.26 0.85 16 4 C -0.14 -2.46 8.77 -38.99 -0.34 -2.80 16 5 C -0.17 -2.87 5.87 -105.04 -0.62 -3.49 16 6 C 0.04 0.54 9.45 -37.19 -0.35 0.19 16 7 C -0.28 -3.82 9.41 -37.51 -0.35 -4.17 16 8 C 0.56 7.80 7.70 -13.05 -0.10 7.70 16 9 O -0.56 -9.71 15.89 5.16 0.08 -9.63 16 10 N -0.73 -7.59 5.07 -55.25 -0.28 -7.87 16 11 C 0.17 1.65 2.81 -67.93 -0.19 1.46 16 12 H 0.09 0.99 7.33 -51.93 -0.38 0.61 16 13 C -0.16 -1.43 9.33 37.16 0.35 -1.09 16 14 C -0.16 -1.18 5.35 -90.62 -0.48 -1.67 16 15 C -0.17 -1.05 9.73 -26.75 -0.26 -1.31 16 16 C -0.18 -1.22 10.17 -26.76 -0.27 -1.49 16 17 C -0.06 -1.04 9.40 -39.12 -0.37 -1.41 16 18 C -0.22 -4.63 9.14 -39.49 -0.36 -5.00 16 19 C 0.15 3.53 6.67 -38.76 -0.26 3.27 16 20 O -0.15 -4.12 9.52 -13.94 -0.13 -4.26 16 21 C -0.39 -10.45 9.48 30.90 0.29 -10.16 16 22 H 0.10 2.34 5.18 -52.49 -0.27 2.06 16 23 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 24 N -0.84 -23.95 13.67 55.48 0.76 -23.19 16 25 Si 0.95 19.48 29.55 -169.99 -5.02 14.45 16 26 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 27 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 28 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 29 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 30 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 32 H 0.12 1.88 6.28 -52.49 -0.33 1.55 16 33 H 0.12 1.85 7.52 -52.48 -0.39 1.45 16 34 H 0.12 1.47 6.06 -52.48 -0.32 1.15 16 35 H 0.40 3.19 8.53 -40.82 -0.35 2.84 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.47 7.29 -51.93 -0.38 0.09 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.11 0.68 8.07 -51.93 -0.42 0.27 16 40 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 0.57 7.61 -51.93 -0.40 0.18 16 42 H 0.10 0.71 8.05 -51.92 -0.42 0.30 16 43 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.12 1.66 6.15 -52.49 -0.32 1.34 16 45 H 0.14 2.73 5.62 -52.49 -0.29 2.44 16 46 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 388.61 15.07 5.86 5.86 Total: -1.00 -32.37 388.61 -8.09 -40.46 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.32 Total: 7.71 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -2.69 Total: -16.70 kcal Atomic # 7 Polarization: -31.54 SS G_CDS: 0.48 Total: -31.07 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.40 Total: -20.71 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.45 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.37 -8.09 -40.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008357031.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.725 kcal (2) G-P(sol) polarization free energy of solvation -32.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds