Wall clock time and date at job start Tue Mar 31 2020 17:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35956 * 117.00142 * 2 1 4 4 C 1.38079 * 119.99817 * 359.97438 * 3 2 1 5 5 C 1.39976 * 119.83707 * 179.97438 * 4 3 2 6 6 C 1.46971 * 120.07904 * 180.02562 * 5 4 3 7 7 C 1.35027 * 120.00265 * 179.97438 * 6 5 4 8 8 C 1.46245 * 120.00068 * 179.97438 * 7 6 5 9 9 O 1.21730 * 120.00331 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00347 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00653 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.46761 * 324.99586 * 11 10 8 13 13 C 1.52998 * 109.47326 * 84.99317 * 11 10 8 14 14 C 1.53005 * 109.47346 * 204.99866 * 11 10 8 15 15 C 1.52998 * 117.49792 * 179.97438 * 14 11 10 16 16 C 1.52994 * 117.49906 * 111.37200 * 14 11 10 17 17 C 1.40029 * 119.84447 * 0.27718 * 5 4 3 18 18 C 1.37652 * 119.99905 * 359.44320 * 17 5 4 19 19 C 1.39056 * 120.15825 * 0.55773 * 18 17 5 20 20 O 1.35613 * 119.91881 * 179.73653 * 19 18 17 21 21 C 1.34760 * 117.00236 * 354.38788 * 20 19 18 22 22 H 1.07997 * 119.99611 * 5.05965 * 21 20 19 23 23 C 1.38704 * 120.00031 * 185.06459 * 21 20 19 24 24 N 1.31513 * 120.00079 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99806 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47148 * 89.99595 * 25 23 21 27 27 H 1.48498 * 109.46903 * 209.99725 * 25 23 21 28 28 H 1.48494 * 109.47249 * 329.99213 * 25 23 21 29 29 H 1.08999 * 109.46881 * 60.00450 * 1 2 3 30 30 H 1.08996 * 109.47155 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47578 * 300.00456 * 1 2 3 32 32 H 1.07997 * 120.08056 * 359.95969 * 4 3 2 33 33 H 1.08003 * 119.99988 * 359.97438 * 6 5 4 34 34 H 1.08003 * 119.99747 * 0.02562 * 7 6 5 35 35 H 0.96999 * 119.99866 * 359.97438 * 10 8 7 36 36 H 1.09006 * 109.46702 * 60.00642 * 13 11 10 37 37 H 1.08999 * 109.47536 * 179.97438 * 13 11 10 38 38 H 1.08995 * 109.47447 * 300.00868 * 13 11 10 39 39 H 1.09002 * 115.55620 * 325.68555 * 14 11 10 40 40 H 1.09006 * 117.49670 * 145.01745 * 15 14 11 41 41 H 1.08994 * 117.49848 * 0.02562 * 15 14 11 42 42 H 1.09007 * 117.49922 * 0.02562 * 16 14 11 43 43 H 1.08993 * 117.50334 * 214.97644 * 16 14 11 44 44 H 1.07998 * 120.00014 * 179.70545 * 17 5 4 45 45 H 1.07998 * 119.91730 * 180.27686 * 18 17 5 46 46 H 0.97001 * 120.00093 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2942 2.3694 -0.0005 5 6 1.9332 3.6148 0.0000 6 6 1.1379 4.8507 0.0000 7 6 1.7559 6.0513 0.0011 8 6 0.9646 7.2811 0.0005 9 8 -0.2513 7.2225 -0.0004 10 7 1.5814 8.4794 0.0010 11 6 0.7887 9.7114 0.0010 12 1 -0.1156 9.5616 -0.5889 13 6 0.4063 10.0719 1.4379 14 6 1.6124 10.8479 -0.6080 15 6 0.9553 12.2266 -0.6987 16 6 1.1660 11.3952 -1.9652 17 6 3.3319 3.6803 -0.0048 18 6 4.0752 2.5217 0.0016 19 6 3.4405 1.2845 0.0010 20 8 4.1776 0.1461 0.0019 21 6 5.5133 0.2820 -0.1141 22 1 5.9573 1.2664 -0.1201 23 6 6.3176 -0.8424 -0.2260 24 7 5.7768 -2.0412 -0.2184 25 14 8.1691 -0.6540 -0.3876 26 1 8.7862 -0.6521 0.9630 27 1 8.7145 -1.7856 -1.1795 28 1 8.4783 0.6254 -1.0750 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.2156 2.3144 -0.0016 33 1 0.0591 4.7988 -0.0008 34 1 2.8347 6.1032 0.0015 35 1 2.5502 8.5262 0.0022 36 1 1.3106 10.2218 2.0278 37 1 -0.1831 10.9888 1.4380 38 1 -0.1804 9.2623 1.8718 39 1 2.6831 10.8127 -0.4069 40 1 1.5937 13.0987 -0.5570 41 1 -0.0636 12.3241 -0.3242 42 1 0.2852 10.9459 -2.4241 43 1 1.9430 11.7202 -2.6571 44 1 3.8275 4.6398 -0.0092 45 1 5.1539 2.5738 0.0024 46 1 6.3394 -2.8276 -0.2962 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008357031.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:11 Heat of formation + Delta-G solvation = -56.991560 kcal Electronic energy + Delta-G solvation = -26733.057757 eV Core-core repulsion = 22782.295983 eV Total energy + Delta-G solvation = -3950.761773 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.32940 -40.84511 -39.31449 -38.75722 -38.02794 -35.32473 -34.62567 -33.90432 -31.47810 -31.18048 -29.90730 -27.88885 -27.37997 -25.79058 -24.32812 -23.32206 -23.14836 -22.14940 -21.47764 -20.28063 -19.93485 -19.32286 -18.21588 -17.86614 -17.34241 -16.94502 -16.68254 -16.33058 -15.87189 -15.79438 -15.56927 -15.54624 -15.27870 -15.11204 -14.99032 -14.73539 -14.21083 -13.91313 -13.65470 -13.39124 -13.28383 -13.22012 -12.98115 -12.85974 -12.68684 -12.49090 -12.30255 -12.16116 -12.13102 -12.01648 -11.82971 -11.44144 -11.32355 -11.08463 -10.98921 -10.87761 -10.52157 -10.03629 -9.47588 -8.53173 -8.46889 -6.11414 -0.30674 0.54434 1.11300 1.37387 1.48147 1.55552 2.17462 2.21731 2.36096 2.55091 2.86330 2.92122 3.14554 3.35705 3.64015 3.74377 3.92514 3.99202 4.11114 4.14139 4.21337 4.23422 4.31860 4.38965 4.41557 4.45333 4.50460 4.53042 4.62806 4.70577 4.74308 4.83063 4.90788 4.96445 5.03408 5.07864 5.11920 5.19399 5.27769 5.29180 5.30503 5.46099 5.51607 5.60759 5.77671 5.92136 5.98031 6.59130 6.63027 6.95556 7.30410 7.75820 8.74846 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014636 B = 0.002165 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.607670 B =12926.987665 C =14515.838886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.343 6.343 3 C 0.038 3.962 4 C -0.135 4.135 5 C -0.133 4.133 6 C 0.011 3.989 7 C -0.237 4.237 8 C 0.550 3.450 9 O -0.594 6.594 10 N -0.709 5.709 11 C 0.171 3.829 12 H 0.063 0.937 13 C -0.156 4.156 14 C -0.166 4.166 15 C -0.161 4.161 16 C -0.185 4.185 17 C -0.065 4.065 18 C -0.218 4.218 19 C 0.101 3.899 20 O -0.212 6.212 21 C -0.415 4.415 22 H 0.110 0.890 23 C -0.023 4.023 24 N -0.914 5.914 25 Si 1.022 2.978 26 H -0.263 1.263 27 H -0.274 1.274 28 H -0.248 1.248 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.065 0.935 32 H 0.154 0.846 33 H 0.125 0.875 34 H 0.153 0.847 35 H 0.415 0.585 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.037 0.963 39 H 0.124 0.876 40 H 0.112 0.888 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.105 0.895 44 H 0.158 0.842 45 H 0.138 0.862 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.446 25.520 -0.122 26.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.259 6.259 3 C -0.007 4.007 4 C -0.153 4.153 5 C -0.134 4.134 6 C -0.009 4.009 7 C -0.258 4.258 8 C 0.341 3.659 9 O -0.478 6.478 10 N -0.360 5.360 11 C 0.067 3.933 12 H 0.082 0.918 13 C -0.214 4.214 14 C -0.184 4.184 15 C -0.199 4.199 16 C -0.222 4.222 17 C -0.083 4.083 18 C -0.237 4.237 19 C 0.049 3.951 20 O -0.117 6.117 21 C -0.490 4.490 22 H 0.128 0.872 23 C -0.222 4.222 24 N -0.551 5.551 25 Si 0.841 3.159 26 H -0.187 1.187 27 H -0.199 1.199 28 H -0.171 1.171 29 H 0.083 0.917 30 H 0.128 0.872 31 H 0.084 0.916 32 H 0.172 0.828 33 H 0.143 0.857 34 H 0.170 0.830 35 H 0.252 0.748 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.056 0.944 39 H 0.142 0.858 40 H 0.130 0.870 41 H 0.116 0.884 42 H 0.103 0.897 43 H 0.123 0.877 44 H 0.176 0.824 45 H 0.155 0.845 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.210 24.858 -0.122 25.883 hybrid contribution 0.777 -0.598 -0.062 0.982 sum -6.433 24.261 -0.184 25.100 Atomic orbital electron populations 1.23272 0.77118 1.04980 1.02057 1.86189 1.22931 1.26856 1.89885 1.18382 0.89155 0.85793 1.07401 1.21254 1.00082 0.90084 1.03925 1.18537 0.93047 0.91993 1.09789 1.22124 0.99234 0.90464 0.89085 1.22820 1.01193 0.90985 1.10804 1.18519 0.87205 0.84959 0.75197 1.90773 1.15873 1.88288 1.52840 1.45828 1.11058 1.04616 1.74467 1.20454 0.93600 0.82436 0.96822 0.91838 1.22100 1.02130 1.01551 0.95623 1.22434 1.00336 0.94505 1.01132 1.23023 1.02421 0.93632 1.00790 1.23102 1.03557 1.04320 0.91179 1.21297 0.92549 0.97941 0.96546 1.21041 1.01134 0.90778 1.10746 1.19583 0.89535 0.88171 0.97827 1.83977 1.20244 1.27814 1.79711 1.21986 0.78801 0.95921 1.52336 0.87234 1.26700 1.06230 0.93548 0.95684 1.70204 1.38533 0.98831 1.47561 0.84544 0.73062 0.79168 0.79173 1.18744 1.19900 1.17090 0.91685 0.87217 0.91609 0.82815 0.85680 0.82967 0.74759 0.91171 0.90296 0.94417 0.85772 0.86997 0.88444 0.89653 0.87664 0.82434 0.84462 0.91764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.81 113.37 1.11 1.70 16 2 O -0.34 -15.25 10.28 -79.08 -0.81 -16.06 16 3 C 0.04 1.65 6.70 22.57 0.15 1.80 16 4 C -0.13 -4.64 8.77 22.65 0.20 -4.44 16 5 C -0.13 -4.17 5.87 -20.13 -0.12 -4.29 16 6 C 0.01 0.29 9.45 23.82 0.23 0.51 16 7 C -0.24 -5.37 9.41 23.61 0.22 -5.15 16 8 C 0.55 13.42 7.70 86.32 0.66 14.09 16 9 O -0.59 -19.24 15.89 -4.44 -0.07 -19.31 16 10 N -0.71 -12.07 5.07 -446.92 -2.27 -14.33 16 11 C 0.17 2.76 2.81 44.99 0.13 2.88 16 12 H 0.06 1.35 7.33 -2.39 -0.02 1.33 16 13 C -0.16 -2.36 9.33 71.98 0.67 -1.69 16 14 C -0.17 -1.79 5.35 -10.79 -0.06 -1.84 16 15 C -0.16 -1.43 9.73 30.58 0.30 -1.13 16 16 C -0.18 -2.03 10.17 30.58 0.31 -1.72 16 17 C -0.07 -2.10 9.40 22.57 0.21 -1.88 16 18 C -0.22 -8.94 9.14 22.33 0.20 -8.73 16 19 C 0.10 5.02 6.67 22.80 0.15 5.17 16 20 O -0.21 -12.80 9.52 -6.54 -0.06 -12.86 16 21 C -0.41 -23.61 9.48 67.93 0.64 -22.96 16 22 H 0.11 5.54 5.18 -2.91 -0.02 5.52 16 23 C -0.02 -1.30 5.49 84.85 0.47 -0.83 16 24 N -0.91 -56.02 13.67 21.62 0.30 -55.72 16 25 Si 1.02 41.62 29.55 68.60 2.03 43.64 16 26 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 27 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 28 H -0.25 -9.16 7.11 99.48 0.71 -8.46 16 29 H 0.06 1.63 7.66 -2.39 -0.02 1.61 16 30 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.07 1.64 7.66 -2.39 -0.02 1.62 16 32 H 0.15 4.27 6.28 -2.91 -0.02 4.25 16 33 H 0.13 3.37 7.52 -2.91 -0.02 3.34 16 34 H 0.15 2.60 6.06 -2.91 -0.02 2.58 16 35 H 0.42 4.55 8.53 -92.71 -0.79 3.76 16 36 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.08 0.95 7.29 -2.39 -0.02 0.93 16 38 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.12 0.99 8.07 -2.39 -0.02 0.97 16 40 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.10 0.86 7.61 -2.39 -0.02 0.84 16 42 H 0.08 1.12 8.05 -2.38 -0.02 1.10 16 43 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.16 3.66 6.15 -2.91 -0.02 3.64 16 45 H 0.14 5.51 5.62 -2.91 -0.02 5.49 16 46 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -78.60 388.61 4.82 -73.78 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: 0.23 Total: 29.40 kcal Atomic # 6 Polarization: -34.01 SS G_CDS: 5.48 Total: -28.52 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: -1.97 Total: -70.06 kcal Atomic # 8 Polarization: -47.29 SS G_CDS: -0.95 Total: -48.24 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.64 kcal Total: -78.60 4.82 -73.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008357031.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.784 kcal (2) G-P(sol) polarization free energy of solvation -78.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds