Wall clock time and date at job start Tue Mar 31 2020 17:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.70046 * 2 1 4 4 C 1.53623 * 109.66598 * 120.59295 * 2 1 3 5 5 C 1.53038 * 109.24454 * 174.54831 * 4 2 1 6 6 C 1.53045 * 109.53693 * 298.51539 * 5 4 2 7 7 C 1.53190 * 109.31229 * 61.36450 * 6 5 4 8 8 N 1.46923 * 108.77613 * 305.36091 * 7 6 5 9 9 C 1.34776 * 120.63435 * 233.59335 * 8 7 6 10 10 O 1.21278 * 120.00408 * 175.35537 * 9 8 7 11 11 C 1.50700 * 119.99763 * 355.34461 * 9 8 7 12 12 O 1.45202 * 109.47373 * 180.02562 * 11 9 8 13 13 C 1.34803 * 117.00447 * 180.02562 * 12 11 9 14 14 O 1.21532 * 119.99521 * 359.97438 * 13 12 11 15 15 C 1.47283 * 120.00234 * 179.72732 * 13 12 11 16 16 C 1.39293 * 120.28431 * 354.79456 * 15 13 12 17 17 C 1.38203 * 120.08226 * 179.69809 * 16 15 13 18 18 C 1.38840 * 120.68491 * 0.60180 * 17 16 15 19 19 C 1.37603 * 120.57947 * 359.67318 * 18 17 16 20 20 C 1.40705 * 119.88539 * 0.02562 * 19 18 17 21 21 C 1.40867 * 120.32829 * 180.02562 * 20 19 18 22 22 H 1.08008 * 119.99541 * 145.09183 * 21 20 19 23 23 C 1.40288 * 120.00365 * 325.09211 * 21 20 19 24 24 N 1.30622 * 119.99866 * 1.04887 * 23 21 20 25 25 Si 1.86795 * 120.00004 * 181.04388 * 23 21 20 26 26 H 1.48500 * 109.47310 * 60.00521 * 25 23 21 27 27 H 1.48501 * 109.47024 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47663 * 299.99982 * 25 23 21 29 29 H 1.09005 * 109.46972 * 175.46768 * 1 2 3 30 30 H 1.08996 * 109.47062 * 295.46750 * 1 2 3 31 31 H 1.08999 * 109.47352 * 55.46952 * 1 2 3 32 32 H 1.09011 * 109.63046 * 54.55746 * 4 2 1 33 33 H 1.08996 * 109.43305 * 294.42161 * 4 2 1 34 34 H 1.08996 * 109.46249 * 178.49329 * 5 4 2 35 35 H 1.09002 * 109.44403 * 58.52402 * 5 4 2 36 36 H 1.08997 * 109.49426 * 301.40966 * 6 5 4 37 37 H 1.08997 * 109.52264 * 181.33032 * 6 5 4 38 38 H 1.08999 * 109.58323 * 185.57737 * 7 6 5 39 39 H 1.08994 * 109.58779 * 65.15200 * 7 6 5 40 40 H 1.09003 * 109.46987 * 60.00899 * 11 9 8 41 41 H 1.09000 * 109.47842 * 300.00781 * 11 9 8 42 42 H 1.07994 * 119.96169 * 359.97438 * 16 15 13 43 43 H 1.08003 * 119.66284 * 180.27670 * 17 16 15 44 44 H 1.07995 * 119.71323 * 179.69883 * 18 17 16 45 45 H 1.07995 * 120.05360 * 180.02562 * 19 18 17 46 46 H 0.96994 * 119.99800 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7362 1.2453 5 6 3.5712 -0.8498 1.1676 6 6 3.9615 -1.6627 -0.0690 7 6 3.4657 -0.9418 -1.3264 8 7 2.0226 -0.6995 -1.1945 9 6 1.1674 -1.1061 -2.1536 10 8 -0.0279 -0.9761 -1.9952 11 6 1.6966 -1.7222 -3.4230 12 8 0.5862 -2.0734 -4.2902 13 6 0.8902 -2.6400 -5.4749 14 8 2.0516 -2.8347 -5.7751 15 6 -0.1854 -3.0281 -6.4033 16 6 -1.5196 -2.9128 -6.0201 17 6 -2.5257 -3.2722 -6.8968 18 6 -2.2230 -3.7623 -8.1601 19 6 -0.9145 -3.8930 -8.5653 20 6 0.1289 -3.5284 -7.6945 21 6 1.4717 -3.6578 -8.0998 22 1 2.2067 -2.9376 -7.7715 23 6 1.8545 -4.7220 -8.9299 24 7 0.9619 -5.5812 -9.3436 25 14 3.6405 -4.9101 -9.4435 26 1 4.4884 -5.0746 -8.2355 27 1 3.7819 -6.1046 -10.3145 28 1 4.0712 -3.7005 -10.1896 29 1 -0.3633 -1.0245 -0.0812 30 1 -0.3633 0.4419 0.9278 31 1 -0.3634 0.5825 -0.8466 32 1 1.6096 -1.7338 1.2889 33 1 1.7689 -0.1772 2.1386 34 1 3.9443 -1.3480 2.0623 35 1 4.0063 0.1473 1.0989 36 1 3.5061 -2.6514 -0.0129 37 1 5.0460 -1.7635 -0.1112 38 1 3.6532 -1.5635 -2.2018 39 1 3.9877 0.0090 -1.4323 40 1 2.2669 -2.6191 -3.1813 41 1 2.3427 -1.0071 -3.9322 42 1 -1.7683 -2.5378 -5.0384 43 1 -3.5580 -3.1758 -6.5943 44 1 -3.0215 -4.0431 -8.8308 45 1 -0.6887 -4.2748 -9.5499 46 1 1.2265 -6.3168 -9.9178 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022581869.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:22 Heat of formation + Delta-G solvation = -91.643735 kcal Electronic energy + Delta-G solvation = -28410.584659 eV Core-core repulsion = 24458.320255 eV Total energy + Delta-G solvation = -3952.264404 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.66581 -39.33203 -37.56979 -37.09331 -35.28093 -33.75467 -33.34645 -32.87671 -30.22044 -29.66813 -28.50001 -27.29835 -25.53268 -24.76208 -22.93813 -22.13585 -21.20144 -20.93656 -19.68954 -19.15083 -17.53175 -17.04672 -16.58393 -16.28322 -15.92612 -15.52250 -15.24701 -15.02434 -14.70063 -14.43815 -14.25262 -13.99026 -13.60459 -13.36006 -13.27221 -12.82230 -12.66603 -12.56070 -12.43471 -12.33001 -11.96988 -11.79562 -11.60047 -11.31939 -11.25637 -11.18310 -11.02909 -10.97387 -10.86887 -10.71433 -10.62485 -10.18646 -10.05227 -9.74988 -9.41054 -9.03188 -8.80163 -8.72004 -7.64792 -7.40571 -6.83545 -4.51751 2.18019 2.54120 2.58374 2.82134 3.04398 3.08962 3.22837 3.64008 3.86161 3.90905 4.37112 4.44794 4.51551 4.61509 4.66363 4.75866 4.96659 5.04483 5.16259 5.28014 5.30930 5.37284 5.41533 5.52402 5.55024 5.59513 5.67119 5.72030 5.74651 5.94780 6.02532 6.12742 6.17485 6.25879 6.40059 6.55164 6.59322 6.93526 7.06967 7.15128 7.20852 7.27933 7.47209 7.64375 7.92924 7.94789 8.14332 8.16924 8.56498 8.70669 8.78197 9.01690 10.06978 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015075 B = 0.003099 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.911976 B = 9032.963121 C =10680.314422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.146 3.854 3 H 0.071 0.929 4 C -0.132 4.132 5 C -0.120 4.120 6 C -0.137 4.137 7 C 0.103 3.897 8 N -0.613 5.613 9 C 0.519 3.481 10 O -0.506 6.506 11 C 0.050 3.950 12 O -0.345 6.345 13 C 0.506 3.494 14 O -0.516 6.516 15 C -0.247 4.247 16 C -0.037 4.037 17 C -0.245 4.245 18 C -0.091 4.091 19 C -0.150 4.150 20 C 0.145 3.855 21 C -0.416 4.416 22 H 0.103 0.897 23 C 0.068 3.932 24 N -0.792 5.792 25 Si 0.923 3.077 26 H -0.261 1.261 27 H -0.279 1.279 28 H -0.263 1.263 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.130 0.870 46 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.006 7.429 15.600 18.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.044 3.956 3 H 0.089 0.911 4 C -0.171 4.171 5 C -0.157 4.157 6 C -0.175 4.175 7 C -0.020 4.020 8 N -0.350 5.350 9 C 0.307 3.693 10 O -0.381 6.381 11 C -0.028 4.028 12 O -0.263 6.263 13 C 0.357 3.643 14 O -0.407 6.407 15 C -0.250 4.250 16 C -0.056 4.056 17 C -0.264 4.264 18 C -0.110 4.110 19 C -0.169 4.169 20 C 0.141 3.859 21 C -0.444 4.444 22 H 0.120 0.880 23 C -0.151 4.151 24 N -0.417 5.417 25 Si 0.748 3.252 26 H -0.186 1.186 27 H -0.204 1.204 28 H -0.187 1.187 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.124 0.876 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.148 0.852 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.677 7.225 15.450 17.975 hybrid contribution 1.038 -0.299 -0.115 1.086 sum 6.715 6.925 15.334 18.116 Atomic orbital electron populations 1.22236 0.92354 1.04307 1.00706 1.21382 0.96011 0.94723 0.83526 0.91135 1.22105 0.95864 1.01590 0.97504 1.21520 0.95811 1.00452 0.97959 1.21928 1.01334 0.99700 0.94514 1.21826 0.80194 1.00877 0.99135 1.48063 1.07192 1.59150 1.20571 1.20268 0.86647 0.78263 0.84143 1.90783 1.15282 1.53514 1.78488 1.22474 0.89773 1.01087 0.89495 1.86690 1.36095 1.73988 1.29510 1.21522 0.89573 0.74497 0.78758 1.90733 1.21613 1.53047 1.75308 1.18743 0.90097 1.21659 0.94470 1.20899 0.92069 0.95037 0.97577 1.20411 0.97074 1.12555 0.96363 1.20925 0.96290 0.98215 0.95529 1.21532 0.90843 1.03883 1.00602 1.17488 0.93938 0.86612 0.87880 1.20151 0.94904 1.08158 1.21163 0.87967 1.26156 1.00558 0.95130 0.93243 1.69678 1.35750 1.10990 1.25311 0.86102 0.81496 0.78431 0.79210 1.18576 1.20360 1.18704 0.90728 0.93966 0.90873 0.91301 0.90818 0.91619 0.91746 0.91234 0.90447 0.89315 0.90970 0.89122 0.89033 0.87629 0.88745 0.88800 0.85202 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 7.60 37.16 0.28 -1.37 16 2 C 0.15 1.47 3.51 -67.37 -0.24 1.23 16 3 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.13 -1.06 5.40 -26.39 -0.14 -1.20 16 5 C -0.12 -0.80 5.88 -26.69 -0.16 -0.95 16 6 C -0.14 -0.99 6.08 -26.61 -0.16 -1.15 16 7 C 0.10 0.88 6.33 -3.71 -0.02 0.86 16 8 N -0.61 -7.03 2.97 -164.97 -0.49 -7.52 16 9 C 0.52 7.95 7.68 -10.99 -0.08 7.86 16 10 O -0.51 -9.30 11.90 -14.10 -0.17 -9.47 16 11 C 0.05 0.82 4.35 36.01 0.16 0.97 16 12 O -0.34 -7.36 9.02 -47.46 -0.43 -7.79 16 13 C 0.51 12.23 7.85 34.41 0.27 12.50 16 14 O -0.52 -13.06 13.39 -19.29 -0.26 -13.31 16 15 C -0.25 -6.30 5.92 -104.39 -0.62 -6.92 16 16 C -0.04 -0.88 9.60 -39.20 -0.38 -1.25 16 17 C -0.24 -5.46 10.03 -39.37 -0.39 -5.85 16 18 C -0.09 -2.07 10.01 -39.59 -0.40 -2.47 16 19 C -0.15 -3.80 8.64 -38.88 -0.34 -4.13 16 20 C 0.14 3.89 5.55 -106.53 -0.59 3.29 16 21 C -0.42 -11.20 7.66 -37.82 -0.29 -11.49 16 22 H 0.10 2.80 5.93 -52.48 -0.31 2.49 16 23 C 0.07 1.69 5.40 -17.30 -0.09 1.60 16 24 N -0.79 -20.00 10.73 55.57 0.60 -19.40 16 25 Si 0.92 19.14 29.56 -169.99 -5.03 14.12 16 26 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 27 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 28 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 29 H 0.07 1.06 6.70 -51.93 -0.35 0.71 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 1.02 6.80 -51.93 -0.35 0.67 16 32 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.77 5.96 -51.93 -0.31 0.46 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 1.37 7.49 -51.93 -0.39 0.98 16 41 H 0.09 1.37 8.10 -51.93 -0.42 0.95 16 42 H 0.11 2.32 7.61 -52.49 -0.40 1.92 16 43 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 44 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 45 H 0.13 3.34 6.27 -52.49 -0.33 3.01 16 46 H 0.28 6.51 8.29 -40.82 -0.34 6.17 16 LS Contribution 368.93 15.07 5.56 5.56 Total: -1.00 -30.49 368.93 -10.05 -40.54 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -6.64 Total: 5.74 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -3.19 Total: -8.46 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: 0.11 Total: -26.93 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.85 Total: -30.57 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.49 -10.05 -40.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022581869.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.099 kcal (2) G-P(sol) polarization free energy of solvation -30.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds