Wall clock time and date at job start Tue Mar 31 2020 17:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.70046 * 2 1 4 4 C 1.53623 * 109.66598 * 120.59295 * 2 1 3 5 5 C 1.53038 * 109.24454 * 174.54831 * 4 2 1 6 6 C 1.53045 * 109.53693 * 298.51539 * 5 4 2 7 7 C 1.53190 * 109.31229 * 61.36450 * 6 5 4 8 8 N 1.46923 * 108.77613 * 305.36091 * 7 6 5 9 9 C 1.34776 * 120.63435 * 233.59335 * 8 7 6 10 10 O 1.21278 * 120.00408 * 175.35537 * 9 8 7 11 11 C 1.50700 * 119.99763 * 355.34461 * 9 8 7 12 12 O 1.45202 * 109.47373 * 180.02562 * 11 9 8 13 13 C 1.34803 * 117.00447 * 180.02562 * 12 11 9 14 14 O 1.21532 * 119.99521 * 359.97438 * 13 12 11 15 15 C 1.47283 * 120.00234 * 179.72732 * 13 12 11 16 16 C 1.39293 * 120.28431 * 354.79456 * 15 13 12 17 17 C 1.38203 * 120.08226 * 179.69809 * 16 15 13 18 18 C 1.38840 * 120.68491 * 0.60180 * 17 16 15 19 19 C 1.37603 * 120.57947 * 359.67318 * 18 17 16 20 20 C 1.40705 * 119.88539 * 0.02562 * 19 18 17 21 21 C 1.40867 * 120.32829 * 180.02562 * 20 19 18 22 22 H 1.08008 * 119.99541 * 145.09183 * 21 20 19 23 23 C 1.40288 * 120.00365 * 325.09211 * 21 20 19 24 24 N 1.30622 * 119.99866 * 1.04887 * 23 21 20 25 25 Si 1.86795 * 120.00004 * 181.04388 * 23 21 20 26 26 H 1.48500 * 109.47310 * 60.00521 * 25 23 21 27 27 H 1.48501 * 109.47024 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47663 * 299.99982 * 25 23 21 29 29 H 1.09005 * 109.46972 * 175.46768 * 1 2 3 30 30 H 1.08996 * 109.47062 * 295.46750 * 1 2 3 31 31 H 1.08999 * 109.47352 * 55.46952 * 1 2 3 32 32 H 1.09011 * 109.63046 * 54.55746 * 4 2 1 33 33 H 1.08996 * 109.43305 * 294.42161 * 4 2 1 34 34 H 1.08996 * 109.46249 * 178.49329 * 5 4 2 35 35 H 1.09002 * 109.44403 * 58.52402 * 5 4 2 36 36 H 1.08997 * 109.49426 * 301.40966 * 6 5 4 37 37 H 1.08997 * 109.52264 * 181.33032 * 6 5 4 38 38 H 1.08999 * 109.58323 * 185.57737 * 7 6 5 39 39 H 1.08994 * 109.58779 * 65.15200 * 7 6 5 40 40 H 1.09003 * 109.46987 * 60.00899 * 11 9 8 41 41 H 1.09000 * 109.47842 * 300.00781 * 11 9 8 42 42 H 1.07994 * 119.96169 * 359.97438 * 16 15 13 43 43 H 1.08003 * 119.66284 * 180.27670 * 17 16 15 44 44 H 1.07995 * 119.71323 * 179.69883 * 18 17 16 45 45 H 1.07995 * 120.05360 * 180.02562 * 19 18 17 46 46 H 0.96994 * 119.99800 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7362 1.2453 5 6 3.5712 -0.8498 1.1676 6 6 3.9615 -1.6627 -0.0690 7 6 3.4657 -0.9418 -1.3264 8 7 2.0226 -0.6995 -1.1945 9 6 1.1674 -1.1061 -2.1536 10 8 -0.0279 -0.9761 -1.9952 11 6 1.6966 -1.7222 -3.4230 12 8 0.5862 -2.0734 -4.2902 13 6 0.8902 -2.6400 -5.4749 14 8 2.0516 -2.8347 -5.7751 15 6 -0.1854 -3.0281 -6.4033 16 6 -1.5196 -2.9128 -6.0201 17 6 -2.5257 -3.2722 -6.8968 18 6 -2.2230 -3.7623 -8.1601 19 6 -0.9145 -3.8930 -8.5653 20 6 0.1289 -3.5284 -7.6945 21 6 1.4717 -3.6578 -8.0998 22 1 2.2067 -2.9376 -7.7715 23 6 1.8545 -4.7220 -8.9299 24 7 0.9619 -5.5812 -9.3436 25 14 3.6405 -4.9101 -9.4435 26 1 4.4884 -5.0746 -8.2355 27 1 3.7819 -6.1046 -10.3145 28 1 4.0712 -3.7005 -10.1896 29 1 -0.3633 -1.0245 -0.0812 30 1 -0.3633 0.4419 0.9278 31 1 -0.3634 0.5825 -0.8466 32 1 1.6096 -1.7338 1.2889 33 1 1.7689 -0.1772 2.1386 34 1 3.9443 -1.3480 2.0623 35 1 4.0063 0.1473 1.0989 36 1 3.5061 -2.6514 -0.0129 37 1 5.0460 -1.7635 -0.1112 38 1 3.6532 -1.5635 -2.2018 39 1 3.9877 0.0090 -1.4323 40 1 2.2669 -2.6191 -3.1813 41 1 2.3427 -1.0071 -3.9322 42 1 -1.7683 -2.5378 -5.0384 43 1 -3.5580 -3.1758 -6.5943 44 1 -3.0215 -4.0431 -8.8308 45 1 -0.6887 -4.2748 -9.5499 46 1 1.2265 -6.3168 -9.9178 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000022581869.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:21 Heat of formation + Delta-G solvation = -106.329901 kcal Electronic energy + Delta-G solvation = -28411.221499 eV Core-core repulsion = 24458.320255 eV Total energy + Delta-G solvation = -3952.901244 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.81209 -41.00789 -39.12977 -38.37713 -37.04483 -35.62699 -34.27172 -33.66967 -32.06021 -31.52943 -29.72786 -28.28487 -27.40540 -25.57233 -24.56672 -23.21942 -22.80949 -21.93973 -21.46550 -20.18023 -19.38287 -18.59629 -17.91225 -17.64379 -17.33244 -17.09477 -16.78953 -16.23564 -15.98628 -15.42999 -15.38355 -15.18288 -15.01041 -14.72444 -14.50974 -14.40660 -14.23024 -13.85212 -13.58279 -13.45266 -13.31022 -13.26792 -12.91412 -12.80944 -12.71068 -12.60021 -12.36141 -12.08465 -11.97260 -11.92473 -11.71886 -11.60769 -11.58884 -11.51125 -11.25463 -10.72198 -10.18396 -9.65015 -9.54072 -9.32083 -8.69378 -6.48801 0.28597 0.99077 1.33499 1.35636 1.38596 1.47004 1.53201 1.97876 2.19441 2.28346 2.72709 3.31470 3.60566 3.75779 3.83814 3.91311 4.00944 4.01851 4.05591 4.26883 4.27153 4.33391 4.40013 4.48757 4.58903 4.65049 4.73315 4.79728 4.82268 4.92775 5.02714 5.05637 5.06803 5.16254 5.18434 5.22442 5.27255 5.33026 5.42248 5.45011 5.58293 5.65801 5.78778 6.00511 6.05620 6.21124 6.25875 6.61241 6.76828 6.85606 7.01659 7.16676 8.23380 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015075 B = 0.003099 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.911976 B = 9032.963121 C =10680.314422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.141 3.859 3 H 0.092 0.908 4 C -0.127 4.127 5 C -0.116 4.116 6 C -0.134 4.134 7 C 0.093 3.907 8 N -0.602 5.602 9 C 0.518 3.482 10 O -0.546 6.546 11 C 0.044 3.956 12 O -0.353 6.353 13 C 0.507 3.493 14 O -0.535 6.535 15 C -0.273 4.273 16 C -0.043 4.043 17 C -0.238 4.238 18 C -0.084 4.084 19 C -0.173 4.173 20 C 0.117 3.883 21 C -0.450 4.450 22 H 0.087 0.913 23 C 0.031 3.969 24 N -0.815 5.815 25 Si 0.987 3.013 26 H -0.269 1.269 27 H -0.259 1.259 28 H -0.256 1.256 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.117 0.883 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.120 0.880 46 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.052 7.996 16.976 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.039 3.961 3 H 0.110 0.890 4 C -0.165 4.165 5 C -0.154 4.154 6 C -0.172 4.172 7 C -0.028 4.028 8 N -0.338 5.338 9 C 0.306 3.694 10 O -0.424 6.424 11 C -0.033 4.033 12 O -0.270 6.270 13 C 0.359 3.641 14 O -0.427 6.427 15 C -0.275 4.275 16 C -0.061 4.061 17 C -0.257 4.257 18 C -0.102 4.102 19 C -0.192 4.192 20 C 0.114 3.886 21 C -0.478 4.478 22 H 0.105 0.895 23 C -0.185 4.185 24 N -0.441 5.441 25 Si 0.808 3.192 26 H -0.194 1.194 27 H -0.183 1.183 28 H -0.180 1.180 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.135 0.865 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.138 0.862 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.735 7.805 16.860 19.762 hybrid contribution 0.629 -0.408 -0.400 0.850 sum 7.364 7.397 16.460 19.490 Atomic orbital electron populations 1.22076 0.93992 1.02168 1.00736 1.21611 0.94782 0.95985 0.83707 0.89026 1.22076 0.96935 1.00600 0.96921 1.21529 0.94512 1.01300 0.98038 1.21934 1.02464 0.98812 0.94007 1.22131 0.78356 1.02323 1.00002 1.48153 1.08085 1.57696 1.19839 1.20124 0.86512 0.78407 0.84407 1.90784 1.16830 1.55516 1.79271 1.22827 0.88802 1.02158 0.89553 1.86624 1.38138 1.73359 1.28921 1.21385 0.89037 0.74315 0.79409 1.90701 1.22177 1.53880 1.75979 1.19080 0.91571 1.22131 0.94755 1.21107 0.91639 0.94997 0.98393 1.20832 0.98540 1.10630 0.95664 1.21288 0.96120 0.96589 0.96236 1.21537 0.91882 1.05482 1.00314 1.17845 0.94621 0.87400 0.88770 1.20194 0.94940 1.09365 1.23304 0.89536 1.26914 1.04632 0.94224 0.92744 1.69701 1.37440 1.11353 1.25578 0.85168 0.76110 0.79259 0.78686 1.19433 1.18251 1.17969 0.93558 0.91552 0.93501 0.92965 0.88821 0.90322 0.90243 0.92690 0.88325 0.89723 0.88642 0.87996 0.87622 0.86535 0.85166 0.85434 0.86192 0.89579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 7.60 71.98 0.55 -2.59 16 2 C 0.14 2.61 3.51 45.12 0.16 2.76 16 3 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 4 C -0.13 -1.73 5.40 30.82 0.17 -1.57 16 5 C -0.12 -1.16 5.88 30.62 0.18 -0.98 16 6 C -0.13 -1.61 6.08 30.67 0.19 -1.42 16 7 C 0.09 1.42 6.33 86.36 0.55 1.97 16 8 N -0.60 -13.26 2.97 -794.24 -2.36 -15.62 16 9 C 0.52 16.08 7.68 87.66 0.67 16.76 16 10 O -0.55 -20.80 11.90 15.78 0.19 -20.61 16 11 C 0.04 1.46 4.35 71.24 0.31 1.77 16 12 O -0.35 -15.50 9.02 -50.76 -0.46 -15.95 16 13 C 0.51 25.38 7.85 70.20 0.55 25.93 16 14 O -0.53 -28.02 13.39 19.73 0.26 -27.76 16 15 C -0.27 -14.31 5.92 -19.72 -0.12 -14.43 16 16 C -0.04 -2.02 9.60 22.52 0.22 -1.80 16 17 C -0.24 -10.21 10.03 22.41 0.22 -9.99 16 18 C -0.08 -3.73 10.01 22.26 0.22 -3.51 16 19 C -0.17 -8.93 8.64 22.72 0.20 -8.74 16 20 C 0.12 6.50 5.55 -21.10 -0.12 6.39 16 21 C -0.45 -25.18 7.66 23.41 0.18 -25.00 16 22 H 0.09 4.97 5.93 -2.91 -0.02 4.96 16 23 C 0.03 1.57 5.40 85.37 0.46 2.03 16 24 N -0.82 -41.81 10.73 21.88 0.23 -41.58 16 25 Si 0.99 39.60 29.56 68.60 2.03 41.63 16 26 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 27 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 28 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 29 H 0.05 1.35 6.70 -2.38 -0.02 1.34 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 31 H 0.05 1.35 6.80 -2.39 -0.02 1.33 16 32 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.08 1.37 5.96 -2.39 -0.01 1.35 16 39 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.10 3.13 7.49 -2.39 -0.02 3.11 16 41 H 0.11 3.18 8.10 -2.39 -0.02 3.16 16 42 H 0.12 5.12 7.61 -2.91 -0.02 5.10 16 43 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 44 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 45 H 0.12 6.33 6.27 -2.91 -0.02 6.32 16 46 H 0.29 13.49 8.29 -92.71 -0.77 12.72 16 Total: -1.00 -69.09 368.93 5.48 -63.62 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: 0.99 Total: 28.70 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 4.59 Total: -12.42 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -2.12 Total: -57.20 kcal Atomic # 8 Polarization: -64.32 SS G_CDS: -0.01 Total: -64.32 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -69.09 5.48 -63.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022581869.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.712 kcal (2) G-P(sol) polarization free energy of solvation -69.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds