Wall clock time and date at job start Tue Mar 31 2020 17:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.49993 * 2 1 4 4 C 1.53046 * 109.49978 * 120.06509 * 2 1 3 5 5 C 1.53034 * 109.53896 * 181.34844 * 4 2 1 6 6 C 1.53193 * 109.31659 * 298.63345 * 5 4 2 7 7 N 1.46933 * 108.77088 * 54.63682 * 6 5 4 8 8 C 1.34770 * 120.62607 * 126.41243 * 7 6 5 9 9 O 1.21288 * 119.99910 * 179.97438 * 8 7 6 10 10 C 1.50696 * 120.00561 * 359.97438 * 8 7 6 11 11 O 1.45202 * 109.47387 * 179.97438 * 10 8 7 12 12 C 1.34805 * 117.00038 * 179.97438 * 11 10 8 13 13 O 1.21531 * 120.00212 * 0.02562 * 12 11 10 14 14 C 1.47282 * 120.00051 * 180.02562 * 12 11 10 15 15 C 1.39288 * 120.28813 * 357.16893 * 14 12 11 16 16 C 1.38200 * 120.08812 * 179.97438 * 15 14 12 17 17 C 1.38844 * 120.68381 * 0.02867 * 16 15 14 18 18 C 1.37605 * 120.58118 * 359.97081 * 17 16 15 19 19 C 1.40703 * 119.88254 * 359.74974 * 18 17 16 20 20 C 1.40867 * 120.33082 * 180.25717 * 19 18 17 21 21 H 1.07994 * 120.00035 * 214.91765 * 20 19 18 22 22 C 1.40292 * 120.00041 * 34.91954 * 20 19 18 23 23 N 1.30619 * 120.00039 * 9.90362 * 22 20 19 24 24 Si 1.86795 * 120.00061 * 189.91248 * 22 20 19 25 25 H 1.48499 * 109.47465 * 89.99802 * 24 22 20 26 26 H 1.48507 * 109.46913 * 209.99819 * 24 22 20 27 27 H 1.48499 * 109.47118 * 329.99578 * 24 22 20 28 28 C 1.46924 * 118.73848 * 306.39166 * 7 6 5 29 29 H 1.08996 * 109.47150 * 299.93113 * 1 2 3 30 30 H 1.08996 * 109.46754 * 59.93841 * 1 2 3 31 31 H 1.09003 * 109.46718 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.45938 * 301.37541 * 4 2 1 33 33 H 1.09002 * 109.45684 * 61.32882 * 4 2 1 34 34 H 1.08998 * 109.49826 * 58.58884 * 5 4 2 35 35 H 1.09009 * 109.49452 * 178.68432 * 5 4 2 36 36 H 1.08992 * 109.58823 * 294.85242 * 6 5 4 37 37 H 1.09000 * 109.70538 * 174.49081 * 6 5 4 38 38 H 1.08999 * 109.47283 * 299.99809 * 10 8 7 39 39 H 1.09002 * 109.47148 * 59.99692 * 10 8 7 40 40 H 1.07997 * 119.95838 * 0.02562 * 15 14 12 41 41 H 1.07997 * 119.66451 * 179.97438 * 16 15 14 42 42 H 1.07998 * 119.71280 * 179.97438 * 17 16 15 43 43 H 1.07994 * 120.05835 * 180.02562 * 18 17 16 44 44 H 0.97001 * 120.00076 * 180.02562 * 23 22 20 45 45 H 1.08999 * 109.58512 * 293.81951 * 28 7 6 46 46 H 1.08998 * 109.58477 * 173.39745 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7228 1.2486 5 6 3.5708 -0.6940 1.2666 6 6 4.1060 -1.4255 0.0316 7 7 3.5053 -0.8283 -1.1690 8 6 4.2819 -0.3853 -2.1774 9 8 3.7740 0.1054 -3.1635 10 6 5.7814 -0.4995 -2.0800 11 8 6.3874 0.0428 -3.2829 12 6 7.7332 0.0167 -3.3554 13 8 8.3823 -0.4471 -2.4386 14 6 8.4171 0.5502 -4.5458 15 6 7.6780 1.0292 -5.6249 16 6 8.3239 1.5294 -6.7396 17 6 9.7107 1.5611 -6.8002 18 6 10.4681 1.0952 -5.7501 19 6 9.8356 0.5861 -4.6010 20 6 10.6018 0.1117 -3.5183 21 1 10.2538 -0.7303 -2.9385 22 6 11.8169 0.7331 -3.1933 23 7 12.1459 1.8619 -3.7622 24 14 12.9644 -0.0540 -1.9471 25 1 13.9040 -0.9667 -2.6466 26 1 13.7333 1.0046 -1.2446 27 1 12.1681 -0.8255 -0.9592 28 6 2.0420 -0.7236 -1.2494 29 1 -0.3633 0.5127 0.8906 30 1 -0.3633 0.5148 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6577 -0.2244 2.1389 33 1 1.6972 -1.7571 1.2355 34 1 3.9154 0.3400 1.2547 35 1 3.9334 -1.1885 2.1679 36 1 3.8387 -2.4807 0.0876 37 1 5.1904 -1.3251 -0.0138 38 1 6.1327 0.0589 -1.2123 39 1 6.0598 -1.5481 -1.9743 40 1 6.5987 1.0104 -5.5902 41 1 7.7441 1.8986 -7.5725 42 1 10.1992 1.9550 -7.6791 43 1 11.5462 1.1242 -5.8061 44 1 12.9862 2.2913 -3.5377 45 1 1.6065 -1.7216 -1.2979 46 1 1.7645 -0.1580 -2.1388 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022679172.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:59 Heat of formation + Delta-G solvation = -110.720704 kcal Electronic energy + Delta-G solvation = -28051.236097 eV Core-core repulsion = 24098.144453 eV Total energy + Delta-G solvation = -3953.091644 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.42813 -39.30752 -37.77866 -37.12982 -35.25049 -34.13378 -33.74355 -32.10476 -30.27393 -29.75512 -28.84204 -26.78065 -25.66116 -25.13187 -22.62912 -22.58069 -21.07418 -20.63174 -19.72215 -19.20565 -17.58009 -17.24854 -16.52551 -16.15829 -16.09514 -15.48721 -15.24797 -15.02203 -14.75087 -14.69604 -14.24643 -13.88862 -13.67765 -13.35269 -13.28983 -12.97659 -12.82746 -12.60415 -12.44753 -12.28893 -12.11777 -11.85489 -11.65509 -11.43712 -11.21398 -11.16098 -11.08999 -11.02593 -10.70375 -10.65631 -10.64412 -10.22779 -10.07338 -9.78172 -9.64255 -9.35624 -8.82040 -8.80205 -7.65086 -7.42923 -6.90546 -4.51389 2.18215 2.53577 2.58576 2.79044 3.04343 3.10680 3.20026 3.65112 3.86419 3.89688 4.30909 4.42195 4.49168 4.59111 4.62865 4.66992 4.92798 5.08107 5.16318 5.25343 5.29411 5.31195 5.37511 5.41577 5.48430 5.53601 5.54703 5.65884 5.76434 5.79704 5.86308 6.03204 6.05956 6.17191 6.31787 6.38883 6.55680 6.92457 7.04072 7.12146 7.17237 7.26153 7.46101 7.63079 7.88810 7.93562 8.11976 8.13729 8.55678 8.70352 8.77516 9.03224 10.04657 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015540 B = 0.002863 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.407157 B = 9776.676830 C =11292.805221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 H 0.075 0.925 4 C -0.114 4.114 5 C -0.137 4.137 6 C 0.102 3.898 7 N -0.615 5.615 8 C 0.520 3.480 9 O -0.515 6.515 10 C 0.053 3.947 11 O -0.345 6.345 12 C 0.506 3.494 13 O -0.518 6.518 14 C -0.249 4.249 15 C -0.035 4.035 16 C -0.246 4.246 17 C -0.089 4.089 18 C -0.149 4.149 19 C 0.149 3.851 20 C -0.422 4.422 21 H 0.111 0.889 22 C 0.069 3.931 23 N -0.785 5.785 24 Si 0.917 3.083 25 H -0.266 1.266 26 H -0.277 1.277 27 H -0.257 1.257 28 C 0.118 3.882 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.118 0.882 44 H 0.284 0.716 45 H 0.067 0.933 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.128 -5.136 9.889 18.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 H 0.094 0.906 4 C -0.152 4.152 5 C -0.175 4.175 6 C -0.021 4.021 7 N -0.352 5.352 8 C 0.307 3.693 9 O -0.389 6.389 10 C -0.025 4.025 11 O -0.263 6.263 12 C 0.357 3.643 13 O -0.409 6.409 14 C -0.252 4.252 15 C -0.053 4.053 16 C -0.266 4.266 17 C -0.107 4.107 18 C -0.168 4.168 19 C 0.145 3.855 20 C -0.450 4.450 21 H 0.128 0.872 22 C -0.150 4.150 23 N -0.410 5.410 24 Si 0.741 3.259 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.180 1.180 28 C -0.004 4.004 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.124 0.876 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.136 0.864 44 H 0.095 0.905 45 H 0.085 0.915 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.024 -4.823 9.619 18.480 hybrid contribution 0.581 -0.189 0.814 1.017 sum -14.444 -5.012 10.432 18.509 Atomic orbital electron populations 1.21757 0.94318 1.02028 1.02142 1.21528 0.95993 1.00340 0.94939 0.90642 1.21588 0.95165 1.00821 0.97604 1.21936 0.96191 1.01736 0.97667 1.21836 0.98802 0.97288 0.84143 1.48007 1.06698 1.62125 1.18342 1.20324 0.88670 0.77673 0.82615 1.90723 1.75078 1.42754 1.30384 1.22402 0.89771 1.00974 0.89362 1.86691 1.24166 1.76203 1.39265 1.21488 0.78315 0.76673 0.87846 1.90708 1.65047 1.45171 1.39961 1.18692 0.93152 1.19212 0.94113 1.20912 0.98042 0.93803 0.92543 1.20388 0.94259 1.12488 0.99418 1.20874 0.93875 0.98392 0.97600 1.21276 0.99314 1.03742 0.92508 1.17457 0.88803 0.87029 0.92185 1.20350 1.00679 1.13184 1.10738 0.87162 1.26184 0.97772 0.94106 0.96953 1.69715 1.21911 1.13087 1.36260 0.86139 0.79490 0.79697 0.80547 1.19137 1.20201 1.18036 1.21645 0.78899 1.00764 0.99104 0.92322 0.92278 0.92482 0.91592 0.91684 0.91196 0.90374 0.90937 0.89302 0.88896 0.88945 0.87597 0.88693 0.88796 0.86385 0.90456 0.91497 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.20 37.16 0.34 -0.58 16 2 C -0.11 -0.87 2.87 -90.50 -0.26 -1.13 16 3 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.11 -0.76 5.17 -26.69 -0.14 -0.90 16 5 C -0.14 -0.99 6.08 -26.61 -0.16 -1.15 16 6 C 0.10 0.88 6.34 -3.71 -0.02 0.85 16 7 N -0.62 -7.17 2.97 -172.77 -0.51 -7.68 16 8 C 0.52 8.23 7.78 -10.99 -0.09 8.14 16 9 O -0.52 -10.15 15.92 -14.11 -0.22 -10.38 16 10 C 0.05 0.88 4.30 36.00 0.15 1.03 16 11 O -0.35 -7.49 9.01 -47.46 -0.43 -7.92 16 12 C 0.51 12.32 7.86 34.41 0.27 12.59 16 13 O -0.52 -13.12 13.30 -19.29 -0.26 -13.38 16 14 C -0.25 -6.38 5.92 -104.39 -0.62 -7.00 16 15 C -0.03 -0.81 9.60 -39.21 -0.38 -1.19 16 16 C -0.25 -5.50 10.03 -39.37 -0.39 -5.90 16 17 C -0.09 -2.02 10.01 -39.59 -0.40 -2.42 16 18 C -0.15 -3.78 8.62 -38.88 -0.34 -4.12 16 19 C 0.15 4.01 5.49 -106.53 -0.59 3.42 16 20 C -0.42 -11.35 7.78 -37.82 -0.29 -11.64 16 21 H 0.11 3.03 5.72 -52.49 -0.30 2.73 16 22 C 0.07 1.73 5.24 -17.30 -0.09 1.64 16 23 N -0.79 -19.90 11.23 55.57 0.62 -19.28 16 24 Si 0.92 18.89 29.57 -169.99 -5.03 13.86 16 25 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 26 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 27 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 28 C 0.12 1.18 5.72 -3.71 -0.02 1.16 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.45 8.14 -51.92 -0.42 0.02 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.77 5.93 -51.93 -0.31 0.46 16 38 H 0.09 1.42 7.69 -51.93 -0.40 1.02 16 39 H 0.09 1.38 7.93 -51.93 -0.41 0.96 16 40 H 0.11 2.35 7.60 -52.49 -0.40 1.95 16 41 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 43 H 0.12 3.00 6.68 -52.49 -0.35 2.65 16 44 H 0.28 6.51 8.29 -40.82 -0.34 6.18 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.09 1.12 7.01 -51.93 -0.36 0.75 16 LS Contribution 375.73 15.07 5.66 5.66 Total: -1.00 -31.37 375.73 -9.92 -41.28 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -6.74 Total: 5.00 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -3.01 Total: -7.17 kcal Atomic # 7 Polarization: -27.07 SS G_CDS: 0.11 Total: -26.96 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.91 Total: -31.67 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.37 -9.92 -41.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022679172.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.438 kcal (2) G-P(sol) polarization free energy of solvation -31.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds