Wall clock time and date at job start Tue Mar 31 2020 17:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.49993 * 2 1 4 4 C 1.53046 * 109.49978 * 120.06509 * 2 1 3 5 5 C 1.53034 * 109.53896 * 181.34844 * 4 2 1 6 6 C 1.53193 * 109.31659 * 298.63345 * 5 4 2 7 7 N 1.46933 * 108.77088 * 54.63682 * 6 5 4 8 8 C 1.34770 * 120.62607 * 126.41243 * 7 6 5 9 9 O 1.21288 * 119.99910 * 179.97438 * 8 7 6 10 10 C 1.50696 * 120.00561 * 359.97438 * 8 7 6 11 11 O 1.45202 * 109.47387 * 179.97438 * 10 8 7 12 12 C 1.34805 * 117.00038 * 179.97438 * 11 10 8 13 13 O 1.21531 * 120.00212 * 0.02562 * 12 11 10 14 14 C 1.47282 * 120.00051 * 180.02562 * 12 11 10 15 15 C 1.39288 * 120.28813 * 357.16893 * 14 12 11 16 16 C 1.38200 * 120.08812 * 179.97438 * 15 14 12 17 17 C 1.38844 * 120.68381 * 0.02867 * 16 15 14 18 18 C 1.37605 * 120.58118 * 359.97081 * 17 16 15 19 19 C 1.40703 * 119.88254 * 359.74974 * 18 17 16 20 20 C 1.40867 * 120.33082 * 180.25717 * 19 18 17 21 21 H 1.07994 * 120.00035 * 214.91765 * 20 19 18 22 22 C 1.40292 * 120.00041 * 34.91954 * 20 19 18 23 23 N 1.30619 * 120.00039 * 9.90362 * 22 20 19 24 24 Si 1.86795 * 120.00061 * 189.91248 * 22 20 19 25 25 H 1.48499 * 109.47465 * 89.99802 * 24 22 20 26 26 H 1.48507 * 109.46913 * 209.99819 * 24 22 20 27 27 H 1.48499 * 109.47118 * 329.99578 * 24 22 20 28 28 C 1.46924 * 118.73848 * 306.39166 * 7 6 5 29 29 H 1.08996 * 109.47150 * 299.93113 * 1 2 3 30 30 H 1.08996 * 109.46754 * 59.93841 * 1 2 3 31 31 H 1.09003 * 109.46718 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.45938 * 301.37541 * 4 2 1 33 33 H 1.09002 * 109.45684 * 61.32882 * 4 2 1 34 34 H 1.08998 * 109.49826 * 58.58884 * 5 4 2 35 35 H 1.09009 * 109.49452 * 178.68432 * 5 4 2 36 36 H 1.08992 * 109.58823 * 294.85242 * 6 5 4 37 37 H 1.09000 * 109.70538 * 174.49081 * 6 5 4 38 38 H 1.08999 * 109.47283 * 299.99809 * 10 8 7 39 39 H 1.09002 * 109.47148 * 59.99692 * 10 8 7 40 40 H 1.07997 * 119.95838 * 0.02562 * 15 14 12 41 41 H 1.07997 * 119.66451 * 179.97438 * 16 15 14 42 42 H 1.07998 * 119.71280 * 179.97438 * 17 16 15 43 43 H 1.07994 * 120.05835 * 180.02562 * 18 17 16 44 44 H 0.97001 * 120.00076 * 180.02562 * 23 22 20 45 45 H 1.08999 * 109.58512 * 293.81951 * 28 7 6 46 46 H 1.08998 * 109.58477 * 173.39745 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7228 1.2486 5 6 3.5708 -0.6940 1.2666 6 6 4.1060 -1.4255 0.0316 7 7 3.5053 -0.8283 -1.1690 8 6 4.2819 -0.3853 -2.1774 9 8 3.7740 0.1054 -3.1635 10 6 5.7814 -0.4995 -2.0800 11 8 6.3874 0.0428 -3.2829 12 6 7.7332 0.0167 -3.3554 13 8 8.3823 -0.4471 -2.4386 14 6 8.4171 0.5502 -4.5458 15 6 7.6780 1.0292 -5.6249 16 6 8.3239 1.5294 -6.7396 17 6 9.7107 1.5611 -6.8002 18 6 10.4681 1.0952 -5.7501 19 6 9.8356 0.5861 -4.6010 20 6 10.6018 0.1117 -3.5183 21 1 10.2538 -0.7303 -2.9385 22 6 11.8169 0.7331 -3.1933 23 7 12.1459 1.8619 -3.7622 24 14 12.9644 -0.0540 -1.9471 25 1 13.9040 -0.9667 -2.6466 26 1 13.7333 1.0046 -1.2446 27 1 12.1681 -0.8255 -0.9592 28 6 2.0420 -0.7236 -1.2494 29 1 -0.3633 0.5127 0.8906 30 1 -0.3633 0.5148 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6577 -0.2244 2.1389 33 1 1.6972 -1.7571 1.2355 34 1 3.9154 0.3400 1.2547 35 1 3.9334 -1.1885 2.1679 36 1 3.8387 -2.4807 0.0876 37 1 5.1904 -1.3251 -0.0138 38 1 6.1327 0.0589 -1.2123 39 1 6.0598 -1.5481 -1.9743 40 1 6.5987 1.0104 -5.5902 41 1 7.7441 1.8986 -7.5725 42 1 10.1992 1.9550 -7.6791 43 1 11.5462 1.1242 -5.8061 44 1 12.9862 2.2913 -3.5377 45 1 1.6065 -1.7216 -1.2979 46 1 1.7645 -0.1580 -2.1388 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000022679172.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:58 Heat of formation + Delta-G solvation = -126.112327 kcal Electronic energy + Delta-G solvation = -28051.903528 eV Core-core repulsion = 24098.144453 eV Total energy + Delta-G solvation = -3953.759074 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.66892 -40.91156 -39.16013 -38.62178 -37.04228 -35.62491 -35.00010 -32.82628 -32.09172 -31.60735 -30.18255 -27.63881 -27.31426 -26.19405 -24.38883 -23.28626 -22.93029 -21.61179 -21.37714 -20.20113 -19.39713 -18.77375 -17.92476 -17.61973 -17.55479 -17.15417 -16.66241 -16.18858 -15.99200 -15.72581 -15.37036 -15.26895 -14.98895 -14.71880 -14.50902 -14.34050 -14.23183 -13.85190 -13.68921 -13.47084 -13.43892 -13.00392 -12.93063 -12.86940 -12.71274 -12.54728 -12.37689 -12.05208 -12.00811 -11.85981 -11.74483 -11.67998 -11.56430 -11.32960 -11.18636 -10.98165 -10.68292 -9.77740 -9.54391 -9.34571 -8.75962 -6.48207 0.28656 0.97363 1.29878 1.33952 1.36256 1.48453 1.52631 1.97489 2.19578 2.27690 2.70636 3.27540 3.60102 3.72607 3.82997 3.87111 3.97748 3.99532 4.03342 4.26633 4.28262 4.38947 4.39991 4.52348 4.56846 4.64633 4.76361 4.79340 4.80967 4.85703 4.90886 5.04056 5.08760 5.15287 5.16533 5.24445 5.24720 5.30003 5.38277 5.44768 5.51903 5.58262 5.77646 5.97392 6.03897 6.13508 6.26136 6.61213 6.75728 6.84951 6.92409 7.16835 8.21817 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015540 B = 0.002863 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.407157 B = 9776.676830 C =11292.805221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 H 0.056 0.944 4 C -0.110 4.110 5 C -0.134 4.134 6 C 0.093 3.907 7 N -0.603 5.603 8 C 0.519 3.481 9 O -0.565 6.565 10 C 0.047 3.953 11 O -0.355 6.355 12 C 0.507 3.493 13 O -0.535 6.535 14 C -0.276 4.276 15 C -0.041 4.041 16 C -0.239 4.239 17 C -0.082 4.082 18 C -0.172 4.172 19 C 0.122 3.878 20 C -0.455 4.455 21 H 0.094 0.906 22 C 0.033 3.967 23 N -0.811 5.811 24 Si 0.985 3.015 25 H -0.253 1.253 26 H -0.263 1.263 27 H -0.266 1.266 28 C 0.113 3.887 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.109 0.891 44 H 0.294 0.706 45 H 0.088 0.912 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.908 -5.850 11.115 20.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 H 0.074 0.926 4 C -0.148 4.148 5 C -0.172 4.172 6 C -0.029 4.029 7 N -0.337 5.337 8 C 0.307 3.693 9 O -0.443 6.443 10 C -0.030 4.030 11 O -0.273 6.273 12 C 0.359 3.641 13 O -0.428 6.428 14 C -0.279 4.279 15 C -0.060 4.060 16 C -0.258 4.258 17 C -0.100 4.100 18 C -0.191 4.191 19 C 0.118 3.882 20 C -0.483 4.483 21 H 0.112 0.888 22 C -0.184 4.184 23 N -0.437 5.437 24 Si 0.805 3.195 25 H -0.177 1.177 26 H -0.187 1.187 27 H -0.190 1.190 28 C -0.008 4.008 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.105 0.895 38 H 0.123 0.877 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.149 0.851 42 H 0.146 0.854 43 H 0.127 0.873 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.840 -5.547 10.873 19.997 hybrid contribution 0.653 0.039 0.420 0.777 sum -15.187 -5.508 11.293 19.711 Atomic orbital electron populations 1.21733 0.92862 1.02915 1.02343 1.21490 0.97137 0.99130 0.94610 0.92571 1.21591 0.94529 1.01598 0.97057 1.21941 0.96730 1.00919 0.97647 1.22166 0.98761 0.98661 0.83279 1.48102 1.07294 1.60335 1.17986 1.20205 0.88365 0.77721 0.83012 1.90698 1.75620 1.45482 1.32515 1.22750 0.90376 1.01992 0.87841 1.86627 1.22701 1.76314 1.41622 1.21359 0.79103 0.76273 0.87397 1.90677 1.65743 1.45936 1.40462 1.19042 0.93411 1.19931 0.95473 1.21114 0.98574 0.93708 0.92555 1.20814 0.94418 1.10835 0.99759 1.21247 0.94188 0.96756 0.97824 1.21293 0.99182 1.05411 0.93186 1.17822 0.89638 0.87773 0.92934 1.20374 1.02456 1.13885 1.11573 0.88781 1.26946 0.98540 0.94283 0.98658 1.69731 1.22728 1.13791 1.37403 0.85156 0.77387 0.79052 0.77910 1.17743 1.18669 1.19001 1.21840 0.77751 1.01889 0.99337 0.91276 0.92988 0.91220 0.90348 0.90165 0.92642 0.88086 0.88467 0.89531 0.87696 0.87144 0.86601 0.85126 0.85353 0.87276 0.89472 0.89364 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.20 71.98 0.66 -0.88 16 2 C -0.10 -1.52 2.87 -10.71 -0.03 -1.55 16 3 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 4 C -0.11 -1.15 5.17 30.62 0.16 -0.99 16 5 C -0.13 -1.62 6.08 30.67 0.19 -1.43 16 6 C 0.09 1.41 6.34 86.36 0.55 1.96 16 7 N -0.60 -13.63 2.97 -818.91 -2.43 -16.06 16 8 C 0.52 16.69 7.78 87.66 0.68 17.37 16 9 O -0.56 -23.04 15.92 15.75 0.25 -22.79 16 10 C 0.05 1.60 4.30 71.23 0.31 1.91 16 11 O -0.36 -15.81 9.01 -50.78 -0.46 -16.27 16 12 C 0.51 25.50 7.86 70.20 0.55 26.05 16 13 O -0.54 -28.05 13.30 19.73 0.26 -27.79 16 14 C -0.28 -14.53 5.92 -19.71 -0.12 -14.65 16 15 C -0.04 -1.94 9.60 22.51 0.22 -1.73 16 16 C -0.24 -10.30 10.03 22.41 0.22 -10.08 16 17 C -0.08 -3.62 10.01 22.27 0.22 -3.40 16 18 C -0.17 -8.81 8.62 22.72 0.20 -8.62 16 19 C 0.12 6.76 5.49 -21.10 -0.12 6.64 16 20 C -0.46 -25.37 7.78 23.41 0.18 -25.19 16 21 H 0.09 5.41 5.72 -2.91 -0.02 5.40 16 22 C 0.03 1.66 5.24 85.37 0.45 2.10 16 23 N -0.81 -41.71 11.23 21.88 0.25 -41.47 16 24 Si 0.98 39.04 29.57 68.60 2.03 41.07 16 25 H -0.25 -9.42 7.11 99.48 0.71 -8.72 16 26 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 27 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 28 C 0.11 2.18 5.72 86.36 0.49 2.67 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.09 1.38 5.93 -2.39 -0.01 1.36 16 38 H 0.11 3.25 7.69 -2.39 -0.02 3.23 16 39 H 0.11 3.28 7.93 -2.39 -0.02 3.26 16 40 H 0.12 5.15 7.60 -2.91 -0.02 5.12 16 41 H 0.13 4.67 8.06 -2.91 -0.02 4.64 16 42 H 0.13 4.74 8.06 -2.91 -0.02 4.71 16 43 H 0.11 5.69 6.68 -2.91 -0.02 5.67 16 44 H 0.29 13.51 8.29 -92.71 -0.77 12.74 16 45 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.07 1.70 7.01 -2.39 -0.02 1.68 16 Total: -1.00 -70.67 375.73 5.69 -64.98 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: 0.98 Total: 28.13 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 4.81 Total: -9.80 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -2.19 Total: -57.53 kcal Atomic # 8 Polarization: -66.91 SS G_CDS: 0.06 Total: -66.85 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Total: -70.67 5.69 -64.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022679172.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.134 kcal (2) G-P(sol) polarization free energy of solvation -70.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds