Wall clock time and date at job start Tue Mar 31 2020 17:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35958 * 116.99763 * 2 1 4 4 C 1.38073 * 120.00087 * 0.30337 * 3 2 1 5 5 C 1.39978 * 119.83578 * 180.27161 * 4 3 2 6 6 C 1.46963 * 120.07604 * 179.70126 * 5 4 3 7 7 C 1.35024 * 120.00030 * 179.72903 * 6 5 4 8 8 C 1.46263 * 120.00261 * 179.97438 * 7 6 5 9 9 O 1.21720 * 119.99747 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00168 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99926 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.46683 * 180.02562 * 11 10 8 13 13 H 1.09001 * 115.56819 * 29.31511 * 12 11 10 14 14 C 1.53008 * 117.49970 * 243.61935 * 12 11 10 15 15 C 1.52997 * 60.00117 * 252.51285 * 14 12 11 16 16 H 1.08992 * 117.50347 * 252.50583 * 15 14 12 17 17 C 1.53005 * 117.49785 * 107.50839 * 15 14 12 18 18 C 1.40023 * 119.84329 * 359.42539 * 5 4 3 19 19 C 1.37647 * 120.00147 * 0.27739 * 18 5 4 20 20 C 1.39058 * 120.15901 * 0.02562 * 19 18 5 21 21 O 1.35612 * 119.91598 * 179.97438 * 20 19 18 22 22 C 1.34758 * 117.00470 * 354.38118 * 21 20 19 23 23 H 1.08000 * 119.99786 * 5.06859 * 22 21 20 24 24 C 1.38711 * 120.00407 * 185.06183 * 22 21 20 25 25 N 1.31522 * 119.99419 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00250 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46989 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.46783 * 119.99851 * 26 24 22 29 29 H 1.48493 * 109.47513 * 239.99929 * 26 24 22 30 30 H 1.08995 * 109.46895 * 299.99271 * 1 2 3 31 31 H 1.08994 * 109.46927 * 60.00191 * 1 2 3 32 32 H 1.09005 * 109.46462 * 179.97438 * 1 2 3 33 33 H 1.08005 * 120.08102 * 359.97438 * 4 3 2 34 34 H 1.08002 * 120.00511 * 359.72335 * 6 5 4 35 35 H 1.08002 * 120.00208 * 359.97438 * 7 6 5 36 36 H 0.97003 * 119.99807 * 0.02562 * 10 8 7 37 37 H 1.08999 * 109.46559 * 60.00189 * 11 10 8 38 38 H 1.08997 * 109.47037 * 300.00723 * 11 10 8 39 39 H 1.08996 * 117.49871 * 145.02403 * 14 12 11 40 40 H 1.09002 * 117.49374 * 0.02562 * 14 12 11 41 41 H 1.08998 * 109.46862 * 111.24813 * 17 15 14 42 42 H 1.08989 * 109.47519 * 231.25505 * 17 15 14 43 43 H 1.09005 * 109.46956 * 351.25578 * 17 15 14 44 44 H 1.08010 * 119.99989 * 180.25398 * 18 5 4 45 45 H 1.08002 * 119.91900 * 179.97438 * 19 18 5 46 46 H 0.97002 * 119.99197 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2942 2.3694 0.0063 5 6 1.9332 3.6148 0.0006 6 6 1.1379 4.8506 0.0006 7 6 1.7558 6.0512 0.0006 8 6 0.9644 7.2811 0.0001 9 8 -0.2514 7.2225 0.0002 10 7 1.5812 8.4795 0.0005 11 6 0.7884 9.7114 0.0006 12 6 1.7255 10.9208 0.0005 13 1 2.6913 10.7675 -0.4810 14 6 1.6817 11.8486 1.2164 15 6 1.0895 12.3074 -0.1177 16 1 1.6367 13.0661 -0.6769 17 6 -0.4350 12.3787 -0.2266 18 6 3.3319 3.6803 0.0006 19 6 4.0752 2.5218 0.0005 20 6 3.4405 1.2845 -0.0002 21 8 4.1776 0.1462 -0.0008 22 6 5.5131 0.2822 -0.1183 23 1 5.9572 1.2666 -0.1241 24 6 6.3175 -0.8422 -0.2317 25 7 5.7766 -2.0410 -0.2250 26 14 8.1688 -0.6537 -0.3938 27 1 8.5232 0.7883 -0.3742 28 1 8.8376 -1.3427 0.7390 29 1 8.6176 -1.2568 -1.6744 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0278 -0.0005 33 1 0.2155 2.3143 0.0109 34 1 0.0591 4.7987 0.0006 35 1 2.8346 6.1033 0.0009 36 1 2.5501 8.5262 0.0008 37 1 0.1595 9.7386 0.8904 38 1 0.1599 9.7390 -0.8895 39 1 2.6186 12.3056 1.5348 40 1 0.9854 11.5971 2.0165 41 1 -0.7455 13.4208 -0.3017 42 1 -0.7616 11.8374 -1.1144 43 1 -0.8840 11.9288 0.6590 44 1 3.8275 4.6400 0.0003 45 1 5.1539 2.5739 0.0001 46 1 6.3391 -2.8272 -0.3047 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032381740.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:44 Heat of formation + Delta-G solvation = -39.171196 kcal Electronic energy + Delta-G solvation = -26438.777090 eV Core-core repulsion = 22488.788066 eV Total energy + Delta-G solvation = -3949.989024 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.83288 -39.59094 -38.33456 -37.67784 -36.55991 -34.29986 -33.04567 -32.24604 -29.77410 -29.23141 -28.71067 -27.34178 -26.35993 -25.48013 -23.25367 -21.96102 -21.77465 -20.90625 -20.30689 -19.00645 -18.21345 -17.75825 -16.93018 -16.73173 -16.05859 -15.45586 -15.29128 -15.20984 -14.94495 -14.73389 -14.36604 -13.99121 -13.92119 -13.70814 -13.59639 -13.46609 -13.35832 -13.21259 -12.55780 -12.38790 -12.16436 -11.92779 -11.81333 -11.71774 -11.56831 -11.45287 -11.14065 -11.03902 -10.79297 -10.68880 -10.50379 -10.43721 -10.38334 -9.77289 -9.58176 -9.43693 -9.09420 -8.82975 -7.99041 -6.92080 -6.62698 -4.13934 1.02199 2.10518 2.53311 3.04123 3.05033 3.08328 3.11028 3.43679 3.58400 3.82174 3.93878 4.21690 4.44011 4.45916 4.46467 4.83060 4.89093 4.91435 4.99096 5.02016 5.21787 5.25228 5.38459 5.41986 5.42279 5.49080 5.52124 5.54260 5.57760 5.61456 5.64653 5.70770 5.80648 5.83088 5.90700 5.99306 6.19899 6.36556 6.42333 6.47738 6.58586 6.83962 6.99847 7.08233 7.25302 7.46203 7.55533 7.78015 8.06995 8.34191 8.80556 9.49572 10.53224 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015080 B = 0.002029 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.311447 B =13796.574827 C =15539.557936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.052 3.948 4 C -0.136 4.136 5 C -0.166 4.166 6 C 0.035 3.965 7 C -0.278 4.278 8 C 0.555 3.445 9 O -0.560 6.560 10 N -0.732 5.732 11 C 0.154 3.846 12 C -0.168 4.168 13 H 0.110 0.890 14 C -0.173 4.173 15 C -0.144 4.144 16 H 0.106 0.894 17 C -0.127 4.127 18 C -0.059 4.059 19 C -0.225 4.225 20 C 0.149 3.851 21 O -0.148 6.148 22 C -0.390 4.390 23 H 0.098 0.902 24 C 0.041 3.959 25 N -0.844 5.844 26 Si 0.945 3.055 27 H -0.264 1.264 28 H -0.274 1.274 29 H -0.274 1.274 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.401 0.599 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.116 0.884 45 H 0.137 0.863 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.488 21.160 0.431 22.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.007 3.993 4 C -0.156 4.156 5 C -0.168 4.168 6 C 0.015 3.985 7 C -0.299 4.299 8 C 0.347 3.653 9 O -0.441 6.441 10 N -0.384 5.384 11 C 0.030 3.970 12 C -0.186 4.186 13 H 0.128 0.872 14 C -0.210 4.210 15 C -0.163 4.163 16 H 0.124 0.876 17 C -0.184 4.184 18 C -0.078 4.078 19 C -0.245 4.245 20 C 0.092 3.908 21 O -0.048 6.048 22 C -0.466 4.466 23 H 0.115 0.885 24 C -0.166 4.166 25 N -0.476 5.476 26 Si 0.769 3.231 27 H -0.188 1.188 28 H -0.199 1.199 29 H -0.199 1.199 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.235 0.765 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.134 0.866 45 H 0.155 0.845 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.233 20.404 0.438 21.652 hybrid contribution 1.286 0.353 -0.074 1.336 sum -5.947 20.757 0.364 21.595 Atomic orbital electron populations 1.22918 0.80162 1.03076 1.00429 1.86237 1.19582 1.26195 1.89718 1.18048 0.89375 0.84610 1.07291 1.20887 0.98616 0.90923 1.05134 1.18171 0.92784 0.91414 1.14388 1.22232 0.99128 0.90961 0.86132 1.22458 0.99817 0.91623 1.16023 1.18415 0.87652 0.83903 0.75363 1.90771 1.14288 1.87777 1.51274 1.45848 1.10231 1.05411 1.76861 1.20768 0.92701 0.81411 1.02127 1.22562 1.01097 0.91230 1.03713 0.87167 1.23231 1.03059 1.03272 0.91464 1.22370 0.96529 0.96625 1.00788 0.87594 1.21391 0.92646 1.02078 1.02335 1.20932 0.92496 0.97362 0.96992 1.20836 1.00718 0.90749 1.12148 1.18884 0.88275 0.87653 0.96013 1.83987 1.19744 1.25858 1.75255 1.21567 0.78372 0.95107 1.51545 0.88460 1.25421 1.00906 0.94156 0.96118 1.70061 1.36552 0.97825 1.43196 0.85579 0.79915 0.79098 0.78475 1.18833 1.19929 1.19914 0.93441 0.93426 0.88963 0.85840 0.85987 0.85777 0.76519 0.91562 0.91283 0.88640 0.88477 0.92020 0.91863 0.92249 0.86601 0.84503 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.81 101.05 0.99 1.43 16 2 O -0.30 -6.47 10.28 -34.22 -0.35 -6.82 16 3 C 0.05 1.11 6.70 -39.13 -0.26 0.85 16 4 C -0.14 -2.46 8.77 -38.99 -0.34 -2.80 16 5 C -0.17 -2.88 5.87 -105.04 -0.62 -3.49 16 6 C 0.04 0.54 9.45 -37.19 -0.35 0.19 16 7 C -0.28 -3.83 9.41 -37.50 -0.35 -4.19 16 8 C 0.55 7.88 7.74 -13.04 -0.10 7.78 16 9 O -0.56 -9.90 16.23 5.17 0.08 -9.81 16 10 N -0.73 -7.73 5.55 -61.76 -0.34 -8.07 16 11 C 0.15 1.47 5.04 -4.04 -0.02 1.44 16 12 C -0.17 -1.18 5.85 -90.62 -0.53 -1.71 16 13 H 0.11 0.69 8.04 -51.93 -0.42 0.27 16 14 C -0.17 -1.11 9.82 -26.73 -0.26 -1.37 16 15 C -0.14 -0.91 6.41 -90.62 -0.58 -1.49 16 16 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 17 C -0.13 -0.79 9.19 37.16 0.34 -0.44 16 18 C -0.06 -1.04 9.40 -39.13 -0.37 -1.41 16 19 C -0.22 -4.64 9.14 -39.49 -0.36 -5.00 16 20 C 0.15 3.53 6.67 -38.76 -0.26 3.28 16 21 O -0.15 -4.13 9.52 -13.93 -0.13 -4.27 16 22 C -0.39 -10.45 9.48 30.91 0.29 -10.15 16 23 H 0.10 2.36 5.18 -52.49 -0.27 2.09 16 24 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 25 N -0.84 -23.94 13.67 55.48 0.76 -23.18 16 26 Si 0.95 19.49 29.55 -169.99 -5.02 14.47 16 27 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 28 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 29 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 30 H 0.05 0.62 7.64 -51.93 -0.40 0.22 16 31 H 0.05 0.63 7.67 -51.93 -0.40 0.23 16 32 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.12 1.88 6.28 -52.48 -0.33 1.55 16 34 H 0.12 1.85 7.52 -52.49 -0.39 1.46 16 35 H 0.12 1.47 6.06 -52.49 -0.32 1.15 16 36 H 0.40 3.20 8.38 -40.82 -0.34 2.86 16 37 H 0.07 0.69 7.88 -51.93 -0.41 0.28 16 38 H 0.07 0.72 7.77 -51.93 -0.40 0.32 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.10 0.64 7.94 -51.93 -0.41 0.23 16 41 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.06 0.41 7.84 -51.93 -0.41 0.00 16 43 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 44 H 0.12 1.66 6.15 -52.48 -0.32 1.34 16 45 H 0.14 2.74 5.62 -52.49 -0.29 2.45 16 46 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 389.12 15.07 5.86 5.86 Total: -1.00 -32.60 389.12 -8.38 -40.98 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -6.35 Total: 6.95 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -2.88 Total: -16.10 kcal Atomic # 7 Polarization: -31.67 SS G_CDS: 0.42 Total: -31.25 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.40 Total: -20.91 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.60 -8.38 -40.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032381740.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.809 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds