Wall clock time and date at job start Tue Mar 31 2020 17:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35958 * 116.99763 * 2 1 4 4 C 1.38073 * 120.00087 * 0.30337 * 3 2 1 5 5 C 1.39978 * 119.83578 * 180.27161 * 4 3 2 6 6 C 1.46963 * 120.07604 * 179.70126 * 5 4 3 7 7 C 1.35024 * 120.00030 * 179.72903 * 6 5 4 8 8 C 1.46263 * 120.00261 * 179.97438 * 7 6 5 9 9 O 1.21720 * 119.99747 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00168 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99926 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.46683 * 180.02562 * 11 10 8 13 13 H 1.09001 * 115.56819 * 29.31511 * 12 11 10 14 14 C 1.53008 * 117.49970 * 243.61935 * 12 11 10 15 15 C 1.52997 * 60.00117 * 252.51285 * 14 12 11 16 16 H 1.08992 * 117.50347 * 252.50583 * 15 14 12 17 17 C 1.53005 * 117.49785 * 107.50839 * 15 14 12 18 18 C 1.40023 * 119.84329 * 359.42539 * 5 4 3 19 19 C 1.37647 * 120.00147 * 0.27739 * 18 5 4 20 20 C 1.39058 * 120.15901 * 0.02562 * 19 18 5 21 21 O 1.35612 * 119.91598 * 179.97438 * 20 19 18 22 22 C 1.34758 * 117.00470 * 354.38118 * 21 20 19 23 23 H 1.08000 * 119.99786 * 5.06859 * 22 21 20 24 24 C 1.38711 * 120.00407 * 185.06183 * 22 21 20 25 25 N 1.31522 * 119.99419 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00250 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46989 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.46783 * 119.99851 * 26 24 22 29 29 H 1.48493 * 109.47513 * 239.99929 * 26 24 22 30 30 H 1.08995 * 109.46895 * 299.99271 * 1 2 3 31 31 H 1.08994 * 109.46927 * 60.00191 * 1 2 3 32 32 H 1.09005 * 109.46462 * 179.97438 * 1 2 3 33 33 H 1.08005 * 120.08102 * 359.97438 * 4 3 2 34 34 H 1.08002 * 120.00511 * 359.72335 * 6 5 4 35 35 H 1.08002 * 120.00208 * 359.97438 * 7 6 5 36 36 H 0.97003 * 119.99807 * 0.02562 * 10 8 7 37 37 H 1.08999 * 109.46559 * 60.00189 * 11 10 8 38 38 H 1.08997 * 109.47037 * 300.00723 * 11 10 8 39 39 H 1.08996 * 117.49871 * 145.02403 * 14 12 11 40 40 H 1.09002 * 117.49374 * 0.02562 * 14 12 11 41 41 H 1.08998 * 109.46862 * 111.24813 * 17 15 14 42 42 H 1.08989 * 109.47519 * 231.25505 * 17 15 14 43 43 H 1.09005 * 109.46956 * 351.25578 * 17 15 14 44 44 H 1.08010 * 119.99989 * 180.25398 * 18 5 4 45 45 H 1.08002 * 119.91900 * 179.97438 * 19 18 5 46 46 H 0.97002 * 119.99197 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2942 2.3694 0.0063 5 6 1.9332 3.6148 0.0006 6 6 1.1379 4.8506 0.0006 7 6 1.7558 6.0512 0.0006 8 6 0.9644 7.2811 0.0001 9 8 -0.2514 7.2225 0.0002 10 7 1.5812 8.4795 0.0005 11 6 0.7884 9.7114 0.0006 12 6 1.7255 10.9208 0.0005 13 1 2.6913 10.7675 -0.4810 14 6 1.6817 11.8486 1.2164 15 6 1.0895 12.3074 -0.1177 16 1 1.6367 13.0661 -0.6769 17 6 -0.4350 12.3787 -0.2266 18 6 3.3319 3.6803 0.0006 19 6 4.0752 2.5218 0.0005 20 6 3.4405 1.2845 -0.0002 21 8 4.1776 0.1462 -0.0008 22 6 5.5131 0.2822 -0.1183 23 1 5.9572 1.2666 -0.1241 24 6 6.3175 -0.8422 -0.2317 25 7 5.7766 -2.0410 -0.2250 26 14 8.1688 -0.6537 -0.3938 27 1 8.5232 0.7883 -0.3742 28 1 8.8376 -1.3427 0.7390 29 1 8.6176 -1.2568 -1.6744 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0278 -0.0005 33 1 0.2155 2.3143 0.0109 34 1 0.0591 4.7987 0.0006 35 1 2.8346 6.1033 0.0009 36 1 2.5501 8.5262 0.0008 37 1 0.1595 9.7386 0.8904 38 1 0.1599 9.7390 -0.8895 39 1 2.6186 12.3056 1.5348 40 1 0.9854 11.5971 2.0165 41 1 -0.7455 13.4208 -0.3017 42 1 -0.7616 11.8374 -1.1144 43 1 -0.8840 11.9288 0.6590 44 1 3.8275 4.6400 0.0003 45 1 5.1539 2.5739 0.0001 46 1 6.3391 -2.8272 -0.3047 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032381740.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:43 Heat of formation + Delta-G solvation = -59.667245 kcal Electronic energy + Delta-G solvation = -26439.665865 eV Core-core repulsion = 22488.788066 eV Total energy + Delta-G solvation = -3950.877799 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.32482 -40.73208 -39.31424 -39.02809 -38.06533 -35.28936 -34.62479 -33.88907 -31.29527 -30.37961 -29.52104 -28.34142 -27.66227 -27.18812 -24.57517 -23.32770 -22.51184 -22.19496 -21.10103 -20.07754 -19.91881 -19.32353 -18.11731 -17.79815 -17.26031 -16.92552 -16.68087 -16.33837 -16.29516 -15.88330 -15.57302 -15.54218 -15.27921 -15.04607 -14.73990 -14.62080 -14.29361 -13.92688 -13.81983 -13.65855 -13.32291 -13.21615 -13.10180 -12.87497 -12.71799 -12.49763 -12.42076 -12.13804 -12.13118 -12.12099 -12.00744 -11.34856 -11.15095 -11.00500 -10.99592 -10.70144 -10.52856 -10.02045 -9.47427 -8.53152 -8.47143 -6.11566 -0.31058 0.54580 1.10674 1.37392 1.47152 1.56300 2.17150 2.21551 2.34883 2.55262 2.84057 2.86846 3.14550 3.35672 3.65780 3.73823 3.90861 3.92599 3.95249 4.13936 4.23428 4.27477 4.32548 4.39611 4.41915 4.44624 4.52283 4.61557 4.63894 4.70815 4.72941 4.90643 4.91818 4.93582 4.98458 5.07932 5.11609 5.14761 5.24036 5.29680 5.42218 5.45229 5.51610 5.52023 5.77599 5.92220 5.98130 6.59088 6.60418 6.95479 7.27316 7.75843 8.74814 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015080 B = 0.002029 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.311447 B =13796.574827 C =15539.557936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.344 6.344 3 C 0.038 3.962 4 C -0.134 4.134 5 C -0.133 4.133 6 C 0.012 3.988 7 C -0.237 4.237 8 C 0.548 3.452 9 O -0.596 6.596 10 N -0.713 5.713 11 C 0.154 3.846 12 C -0.170 4.170 13 H 0.125 0.875 14 C -0.171 4.171 15 C -0.143 4.143 16 H 0.119 0.881 17 C -0.130 4.130 18 C -0.065 4.065 19 C -0.218 4.218 20 C 0.101 3.899 21 O -0.212 6.212 22 C -0.414 4.414 23 H 0.111 0.889 24 C -0.023 4.023 25 N -0.914 5.914 26 Si 1.022 2.978 27 H -0.245 1.245 28 H -0.270 1.270 29 H -0.270 1.270 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.155 0.845 34 H 0.126 0.874 35 H 0.154 0.846 36 H 0.417 0.583 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.159 0.841 45 H 0.138 0.862 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.562 25.965 0.365 26.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.259 6.259 3 C -0.007 4.007 4 C -0.153 4.153 5 C -0.134 4.134 6 C -0.008 4.008 7 C -0.258 4.258 8 C 0.339 3.661 9 O -0.479 6.479 10 N -0.364 5.364 11 C 0.030 3.970 12 C -0.188 4.188 13 H 0.143 0.857 14 C -0.208 4.208 15 C -0.161 4.161 16 H 0.137 0.863 17 C -0.187 4.187 18 C -0.083 4.083 19 C -0.237 4.237 20 C 0.049 3.951 21 O -0.118 6.118 22 C -0.490 4.490 23 H 0.128 0.872 24 C -0.222 4.222 25 N -0.551 5.551 26 Si 0.841 3.159 27 H -0.168 1.168 28 H -0.195 1.195 29 H -0.195 1.195 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.128 0.872 33 H 0.172 0.828 34 H 0.144 0.856 35 H 0.171 0.829 36 H 0.254 0.746 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.126 0.874 40 H 0.110 0.890 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.176 0.824 45 H 0.155 0.845 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.331 25.315 0.376 26.358 hybrid contribution 0.825 -0.532 -0.033 0.982 sum -6.506 24.784 0.343 25.626 Atomic orbital electron populations 1.23275 0.77106 1.04983 1.02070 1.86191 1.22946 1.26862 1.89888 1.18381 0.89146 0.85794 1.07395 1.21259 1.00102 0.90075 1.03893 1.18534 0.93046 0.91991 1.09806 1.22127 0.99268 0.90450 0.88994 1.22805 1.01200 0.90899 1.10889 1.18551 0.87186 0.84976 0.75387 1.90776 1.15935 1.88352 1.52865 1.45766 1.11254 1.04777 1.74615 1.20793 0.93103 0.81876 1.01215 1.22502 1.01176 0.90408 1.04729 0.85740 1.23284 1.03523 1.02793 0.91213 1.22470 0.96493 0.96294 1.00879 0.86329 1.21413 0.92868 1.02665 1.01752 1.21301 0.92550 0.97951 0.96523 1.21042 1.01130 0.90786 1.10745 1.19584 0.89537 0.88163 0.97814 1.83976 1.20271 1.27838 1.79704 1.22035 0.78803 0.95941 1.52225 0.87197 1.26698 1.06207 0.93552 0.95694 1.70217 1.38459 0.98848 1.47606 0.84486 0.73111 0.79966 0.78373 1.16757 1.19521 1.19549 0.91593 0.91668 0.87226 0.82779 0.85625 0.82888 0.74597 0.92580 0.92217 0.87388 0.89014 0.90971 0.92386 0.92918 0.82402 0.84477 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.81 113.37 1.11 1.69 16 2 O -0.34 -15.24 10.28 -79.11 -0.81 -16.05 16 3 C 0.04 1.66 6.70 22.56 0.15 1.81 16 4 C -0.13 -4.62 8.77 22.65 0.20 -4.42 16 5 C -0.13 -4.16 5.87 -20.14 -0.12 -4.28 16 6 C 0.01 0.30 9.45 23.82 0.23 0.53 16 7 C -0.24 -5.34 9.41 23.62 0.22 -5.12 16 8 C 0.55 13.42 7.74 86.33 0.67 14.09 16 9 O -0.60 -19.43 16.23 -4.41 -0.07 -19.50 16 10 N -0.71 -12.18 5.55 -467.50 -2.60 -14.78 16 11 C 0.15 2.50 5.04 86.38 0.43 2.94 16 12 C -0.17 -1.82 5.85 -10.79 -0.06 -1.88 16 13 H 0.12 1.01 8.04 -2.39 -0.02 0.99 16 14 C -0.17 -1.66 9.82 30.60 0.30 -1.36 16 15 C -0.14 -1.38 6.41 -10.79 -0.07 -1.45 16 16 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 17 C -0.13 -1.35 9.19 71.98 0.66 -0.68 16 18 C -0.07 -2.08 9.40 22.56 0.21 -1.87 16 19 C -0.22 -8.92 9.14 22.33 0.20 -8.72 16 20 C 0.10 5.02 6.67 22.80 0.15 5.17 16 21 O -0.21 -12.82 9.52 -6.52 -0.06 -12.88 16 22 C -0.41 -23.57 9.48 67.93 0.64 -22.92 16 23 H 0.11 5.56 5.18 -2.91 -0.02 5.55 16 24 C -0.02 -1.30 5.49 84.85 0.47 -0.83 16 25 N -0.91 -55.98 13.67 21.62 0.30 -55.68 16 26 Si 1.02 41.63 29.55 68.60 2.03 43.66 16 27 H -0.24 -8.96 7.11 99.48 0.71 -8.25 16 28 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 29 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 30 H 0.07 1.63 7.64 -2.39 -0.02 1.61 16 31 H 0.06 1.63 7.67 -2.39 -0.02 1.61 16 32 H 0.11 2.72 8.14 -2.38 -0.02 2.70 16 33 H 0.15 4.25 6.28 -2.91 -0.02 4.23 16 34 H 0.13 3.36 7.52 -2.91 -0.02 3.33 16 35 H 0.15 2.58 6.06 -2.91 -0.02 2.56 16 36 H 0.42 4.54 8.38 -92.71 -0.78 3.77 16 37 H 0.06 1.06 7.88 -2.39 -0.02 1.04 16 38 H 0.06 1.12 7.77 -2.39 -0.02 1.10 16 39 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.09 1.00 7.94 -2.39 -0.02 0.98 16 41 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.06 0.66 7.84 -2.39 -0.02 0.64 16 43 H 0.05 0.61 7.90 -2.38 -0.02 0.59 16 44 H 0.16 3.64 6.15 -2.91 -0.02 3.62 16 45 H 0.14 5.50 5.62 -2.91 -0.02 5.49 16 46 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -78.59 389.12 4.42 -74.17 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.24 Total: 28.38 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: 5.40 Total: -27.30 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: -2.30 Total: -70.46 kcal Atomic # 8 Polarization: -47.49 SS G_CDS: -0.95 Total: -48.43 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -78.59 4.42 -74.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032381740.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.500 kcal (2) G-P(sol) polarization free energy of solvation -78.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds