Wall clock time and date at job start Tue Mar 31 2020 17:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35944 * 117.00323 * 2 1 4 4 C 1.38081 * 120.00141 * 359.97438 * 3 2 1 5 5 C 1.39979 * 119.83973 * 179.97438 * 4 3 2 6 6 C 1.46958 * 120.07915 * 180.02562 * 5 4 3 7 7 C 1.35024 * 120.00487 * 180.02562 * 6 5 4 8 8 C 1.46250 * 120.00562 * 180.02562 * 7 6 5 9 9 O 1.21720 * 119.99647 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99979 * 179.97438 * 8 7 6 11 11 C 1.46506 * 120.00160 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47521 * 180.02562 * 11 10 8 13 13 H 1.09003 * 115.56159 * 330.68778 * 12 11 10 14 14 C 1.53074 * 117.49195 * 116.39809 * 12 11 10 15 15 C 1.52998 * 117.49904 * 184.99962 * 12 11 10 16 16 H 1.09000 * 117.50085 * 0.02562 * 15 12 11 17 17 C 1.52999 * 117.49752 * 145.02443 * 15 12 11 18 18 C 1.40036 * 119.84280 * 0.27768 * 5 4 3 19 19 C 1.37645 * 119.99628 * 359.46373 * 18 5 4 20 20 C 1.39066 * 120.16538 * 0.51805 * 19 18 5 21 21 O 1.35613 * 119.91902 * 179.73944 * 20 19 18 22 22 C 1.34756 * 117.00407 * 354.37288 * 21 20 19 23 23 H 1.08007 * 119.99631 * 5.07207 * 22 21 20 24 24 C 1.38709 * 120.00073 * 185.06263 * 22 21 20 25 25 N 1.31515 * 119.99683 * 180.02562 * 24 22 21 26 26 Si 1.86794 * 119.99775 * 0.02562 * 24 22 21 27 27 H 1.48505 * 109.47231 * 89.99925 * 26 24 22 28 28 H 1.48503 * 109.47133 * 209.99413 * 26 24 22 29 29 H 1.48492 * 109.47473 * 329.99618 * 26 24 22 30 30 H 1.08995 * 109.47241 * 300.00645 * 1 2 3 31 31 H 1.09001 * 109.46819 * 60.00089 * 1 2 3 32 32 H 1.08998 * 109.47925 * 179.97438 * 1 2 3 33 33 H 1.07995 * 120.07772 * 359.96409 * 4 3 2 34 34 H 1.08001 * 120.00195 * 0.02562 * 6 5 4 35 35 H 1.08006 * 119.99670 * 359.97438 * 7 6 5 36 36 H 0.97000 * 120.00414 * 0.02562 * 10 8 7 37 37 H 1.09005 * 109.46867 * 59.99873 * 11 10 8 38 38 H 1.09004 * 109.47119 * 300.00615 * 11 10 8 39 39 H 1.09000 * 117.49661 * 0.02562 * 14 12 11 40 40 H 1.09001 * 117.53001 * 214.95616 * 14 12 11 41 41 H 1.09006 * 109.47239 * 179.91684 * 17 15 12 42 42 H 1.09002 * 109.47164 * 299.91166 * 17 15 12 43 43 H 1.08997 * 109.47490 * 59.91097 * 17 15 12 44 44 H 1.07994 * 120.00143 * 179.70630 * 18 5 4 45 45 H 1.08000 * 119.91733 * 180.22946 * 19 18 5 46 46 H 0.97006 * 119.99844 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2943 2.3693 -0.0005 5 6 1.9334 3.6147 0.0000 6 6 1.1382 4.8506 0.0000 7 6 1.7562 6.0511 0.0000 8 6 0.9650 7.2811 0.0006 9 8 -0.2508 7.2225 0.0015 10 7 1.5819 8.4793 0.0011 11 6 0.7893 9.7114 0.0011 12 6 1.7264 10.9208 0.0011 13 1 2.6923 10.7673 0.4825 14 6 1.6820 11.8491 -1.2152 15 6 1.0905 12.3073 0.1194 16 1 0.0044 12.3579 0.1976 17 6 1.8589 13.3723 0.9043 18 6 3.3322 3.6802 -0.0048 19 6 4.0753 2.5216 0.0011 20 6 3.4405 1.2842 0.0010 21 8 4.1776 0.1459 0.0015 22 6 5.5132 0.2817 -0.1156 23 1 5.9573 1.2662 -0.1219 24 6 6.3174 -0.8428 -0.2279 25 7 7.6209 -0.7103 -0.3417 26 14 5.5491 -2.5454 -0.2175 27 1 5.2188 -2.9480 -1.6082 28 1 6.5085 -3.5179 0.3647 29 1 4.3091 -2.5240 0.5993 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3635 -1.0276 -0.0005 33 1 0.2157 2.3144 -0.0015 34 1 0.0595 4.7987 0.0000 35 1 2.8350 6.1031 0.0004 36 1 2.5508 8.5260 0.0007 37 1 0.1602 9.7387 0.8909 38 1 0.1608 9.7391 -0.8891 39 1 0.9849 11.5981 -2.0146 40 1 2.6185 12.3067 -1.5341 41 1 1.2919 14.3033 0.9046 42 1 2.0027 13.0342 1.9305 43 1 2.8296 13.5383 0.4370 44 1 3.8279 4.6396 -0.0092 45 1 5.1541 2.5735 0.0012 46 1 8.1834 -1.4967 -0.4206 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032381741.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:48 Heat of formation + Delta-G solvation = -38.302593 kcal Electronic energy + Delta-G solvation = -26361.501642 eV Core-core repulsion = 22411.550283 eV Total energy + Delta-G solvation = -3949.951359 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.94118 -39.64753 -38.28794 -37.86801 -36.70306 -34.40958 -33.08318 -32.42180 -29.92458 -29.64887 -28.81857 -27.09664 -26.41747 -25.35842 -23.25453 -21.90327 -21.56606 -21.16457 -20.63315 -19.22587 -18.14166 -17.93334 -17.15607 -16.51676 -16.01662 -15.59566 -15.37717 -15.32010 -15.00794 -14.62246 -14.46527 -14.17314 -13.96825 -13.81260 -13.66684 -13.51426 -13.25510 -13.15490 -12.61851 -12.51815 -12.32916 -11.95802 -11.93967 -11.83461 -11.72144 -11.60174 -11.11103 -10.99583 -10.89715 -10.74866 -10.49901 -10.39164 -10.30313 -9.80626 -9.60530 -9.48577 -9.12470 -8.88417 -8.09404 -7.06256 -6.59043 -4.18820 0.93300 1.99551 2.44161 3.04599 3.16450 3.20943 3.38297 3.40637 3.52483 3.77814 4.14672 4.21079 4.36976 4.40554 4.50010 4.56492 4.80547 4.88158 4.94791 4.96338 5.15395 5.18146 5.31385 5.35528 5.40588 5.41829 5.42928 5.45870 5.46554 5.55086 5.61789 5.64662 5.70266 5.78000 5.87628 5.88783 6.05905 6.30646 6.34344 6.39191 6.50907 6.75843 6.90198 7.14589 7.31077 7.48938 7.51206 7.77889 7.97638 8.29309 8.74636 9.36553 10.46673 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.017938 B = 0.001953 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.549490 B =14334.541233 C =15741.294778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.309 6.309 3 C 0.052 3.948 4 C -0.136 4.136 5 C -0.156 4.156 6 C 0.030 3.970 7 C -0.271 4.271 8 C 0.554 3.446 9 O -0.559 6.559 10 N -0.730 5.730 11 C 0.152 3.848 12 C -0.167 4.167 13 H 0.111 0.889 14 C -0.172 4.172 15 C -0.146 4.146 16 H 0.106 0.894 17 C -0.124 4.124 18 C -0.063 4.063 19 C -0.210 4.210 20 C 0.155 3.845 21 O -0.189 6.189 22 C -0.388 4.388 23 H 0.111 0.889 24 C 0.067 3.933 25 N -0.866 5.866 26 Si 0.905 3.095 27 H -0.271 1.271 28 H -0.281 1.281 29 H -0.254 1.254 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.401 0.599 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.119 0.881 45 H 0.144 0.856 46 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.956 19.169 0.642 22.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.223 6.223 3 C 0.007 3.993 4 C -0.156 4.156 5 C -0.157 4.157 6 C 0.010 3.990 7 C -0.292 4.292 8 C 0.346 3.654 9 O -0.440 6.440 10 N -0.382 5.382 11 C 0.029 3.971 12 C -0.185 4.185 13 H 0.129 0.871 14 C -0.209 4.209 15 C -0.165 4.165 16 H 0.124 0.876 17 C -0.181 4.181 18 C -0.082 4.082 19 C -0.229 4.229 20 C 0.100 3.900 21 O -0.092 6.092 22 C -0.463 4.463 23 H 0.128 0.872 24 C -0.139 4.139 25 N -0.501 5.501 26 Si 0.730 3.270 27 H -0.196 1.196 28 H -0.206 1.206 29 H -0.178 1.178 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.236 0.764 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.137 0.863 45 H 0.161 0.839 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.534 18.569 0.640 21.869 hybrid contribution 0.272 -0.423 -0.062 0.507 sum -11.262 18.146 0.578 21.364 Atomic orbital electron populations 1.22935 0.79876 1.03144 1.00678 1.86173 1.19879 1.26381 1.89881 1.18034 0.89254 0.84638 1.07404 1.20898 0.98724 0.90850 1.05099 1.18247 0.92841 0.91487 1.13102 1.22234 0.99198 0.90911 0.86613 1.22518 0.99951 0.91668 1.15018 1.18398 0.87648 0.83923 0.75429 1.90775 1.14269 1.87779 1.51184 1.45838 1.10285 1.05382 1.76706 1.20807 0.92705 0.81474 1.02152 1.22598 1.01198 0.90999 1.03711 0.87115 1.23278 1.02983 1.03196 0.91466 1.22388 0.99772 0.94620 0.99686 0.87567 1.21377 0.99539 0.97421 0.99737 1.20988 0.92426 0.97596 0.97148 1.20979 1.01249 0.90525 1.10152 1.18624 0.87709 0.87042 0.96621 1.83585 1.20444 1.27522 1.77628 1.20905 0.77161 0.97191 1.51017 0.87183 1.24519 0.94540 0.99749 0.95062 1.69623 1.03159 1.32051 1.45277 0.86163 0.79887 0.81360 0.79609 1.19638 1.20618 1.17765 0.93253 0.93245 0.88937 0.85646 0.85851 0.85625 0.76433 0.91291 0.91530 0.88548 0.88557 0.92002 0.92041 0.92453 0.86309 0.83868 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.31 -6.03 10.28 -34.18 -0.35 -6.38 16 3 C 0.05 1.04 6.70 -39.12 -0.26 0.77 16 4 C -0.14 -2.32 8.77 -38.99 -0.34 -2.66 16 5 C -0.16 -2.57 5.87 -105.04 -0.62 -3.18 16 6 C 0.03 0.44 9.45 -37.19 -0.35 0.09 16 7 C -0.27 -3.59 9.41 -37.51 -0.35 -3.95 16 8 C 0.55 7.65 7.74 -13.04 -0.10 7.54 16 9 O -0.56 -9.65 16.23 5.17 0.08 -9.57 16 10 N -0.73 -7.49 5.55 -61.75 -0.34 -7.83 16 11 C 0.15 1.41 5.96 -4.04 -0.02 1.39 16 12 C -0.17 -1.15 5.57 -90.58 -0.50 -1.65 16 13 H 0.11 0.69 8.04 -51.93 -0.42 0.28 16 14 C -0.17 -1.08 9.83 -26.69 -0.26 -1.34 16 15 C -0.15 -0.90 6.12 -90.62 -0.56 -1.46 16 16 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 17 C -0.12 -0.64 10.19 37.16 0.38 -0.27 16 18 C -0.06 -1.08 9.40 -39.12 -0.37 -1.45 16 19 C -0.21 -4.25 9.14 -39.49 -0.36 -4.61 16 20 C 0.15 3.51 6.67 -38.76 -0.26 3.25 16 21 O -0.19 -4.91 8.35 -13.93 -0.12 -5.02 16 22 C -0.39 -10.49 9.94 30.91 0.31 -10.18 16 23 H 0.11 2.98 5.42 -52.48 -0.28 2.69 16 24 C 0.07 1.81 5.49 -17.51 -0.10 1.71 16 25 N -0.87 -23.92 13.96 55.48 0.77 -23.14 16 26 Si 0.91 21.22 28.62 -169.99 -4.86 16.36 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H -0.25 -6.10 7.11 56.52 0.40 -5.69 16 30 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 31 H 0.05 0.58 7.66 -51.93 -0.40 0.19 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.13 1.76 6.28 -52.49 -0.33 1.43 16 34 H 0.12 1.78 7.52 -52.49 -0.39 1.39 16 35 H 0.13 1.43 6.06 -52.48 -0.32 1.12 16 36 H 0.40 3.11 8.38 -40.82 -0.34 2.77 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.67 7.87 -51.93 -0.41 0.26 16 39 H 0.10 0.61 8.03 -51.93 -0.42 0.20 16 40 H 0.10 0.54 8.05 -51.93 -0.42 0.12 16 41 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.06 0.28 7.90 -51.93 -0.41 -0.13 16 44 H 0.12 1.67 6.15 -52.49 -0.32 1.35 16 45 H 0.14 2.97 5.62 -52.49 -0.29 2.68 16 46 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 390.02 15.07 5.88 5.88 Total: -1.00 -31.41 390.02 -8.12 -39.53 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -6.40 Total: 4.79 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -2.78 Total: -14.61 kcal Atomic # 7 Polarization: -31.40 SS G_CDS: 0.43 Total: -30.97 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.38 Total: -20.97 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.86 Total: 16.36 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.41 -8.12 -39.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032381741.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.227 kcal (2) G-P(sol) polarization free energy of solvation -31.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds