Wall clock time and date at job start Tue Mar 31 2020 17:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35944 * 117.00323 * 2 1 4 4 C 1.38081 * 120.00141 * 359.97438 * 3 2 1 5 5 C 1.39979 * 119.83973 * 179.97438 * 4 3 2 6 6 C 1.46958 * 120.07915 * 180.02562 * 5 4 3 7 7 C 1.35024 * 120.00487 * 180.02562 * 6 5 4 8 8 C 1.46250 * 120.00562 * 180.02562 * 7 6 5 9 9 O 1.21720 * 119.99647 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99979 * 179.97438 * 8 7 6 11 11 C 1.46506 * 120.00160 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47521 * 180.02562 * 11 10 8 13 13 H 1.09003 * 115.56159 * 330.68778 * 12 11 10 14 14 C 1.53074 * 117.49195 * 116.39809 * 12 11 10 15 15 C 1.52998 * 117.49904 * 184.99962 * 12 11 10 16 16 H 1.09000 * 117.50085 * 0.02562 * 15 12 11 17 17 C 1.52999 * 117.49752 * 145.02443 * 15 12 11 18 18 C 1.40036 * 119.84280 * 0.27768 * 5 4 3 19 19 C 1.37645 * 119.99628 * 359.46373 * 18 5 4 20 20 C 1.39066 * 120.16538 * 0.51805 * 19 18 5 21 21 O 1.35613 * 119.91902 * 179.73944 * 20 19 18 22 22 C 1.34756 * 117.00407 * 354.37288 * 21 20 19 23 23 H 1.08007 * 119.99631 * 5.07207 * 22 21 20 24 24 C 1.38709 * 120.00073 * 185.06263 * 22 21 20 25 25 N 1.31515 * 119.99683 * 180.02562 * 24 22 21 26 26 Si 1.86794 * 119.99775 * 0.02562 * 24 22 21 27 27 H 1.48505 * 109.47231 * 89.99925 * 26 24 22 28 28 H 1.48503 * 109.47133 * 209.99413 * 26 24 22 29 29 H 1.48492 * 109.47473 * 329.99618 * 26 24 22 30 30 H 1.08995 * 109.47241 * 300.00645 * 1 2 3 31 31 H 1.09001 * 109.46819 * 60.00089 * 1 2 3 32 32 H 1.08998 * 109.47925 * 179.97438 * 1 2 3 33 33 H 1.07995 * 120.07772 * 359.96409 * 4 3 2 34 34 H 1.08001 * 120.00195 * 0.02562 * 6 5 4 35 35 H 1.08006 * 119.99670 * 359.97438 * 7 6 5 36 36 H 0.97000 * 120.00414 * 0.02562 * 10 8 7 37 37 H 1.09005 * 109.46867 * 59.99873 * 11 10 8 38 38 H 1.09004 * 109.47119 * 300.00615 * 11 10 8 39 39 H 1.09000 * 117.49661 * 0.02562 * 14 12 11 40 40 H 1.09001 * 117.53001 * 214.95616 * 14 12 11 41 41 H 1.09006 * 109.47239 * 179.91684 * 17 15 12 42 42 H 1.09002 * 109.47164 * 299.91166 * 17 15 12 43 43 H 1.08997 * 109.47490 * 59.91097 * 17 15 12 44 44 H 1.07994 * 120.00143 * 179.70630 * 18 5 4 45 45 H 1.08000 * 119.91733 * 180.22946 * 19 18 5 46 46 H 0.97006 * 119.99844 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2943 2.3693 -0.0005 5 6 1.9334 3.6147 0.0000 6 6 1.1382 4.8506 0.0000 7 6 1.7562 6.0511 0.0000 8 6 0.9650 7.2811 0.0006 9 8 -0.2508 7.2225 0.0015 10 7 1.5819 8.4793 0.0011 11 6 0.7893 9.7114 0.0011 12 6 1.7264 10.9208 0.0011 13 1 2.6923 10.7673 0.4825 14 6 1.6820 11.8491 -1.2152 15 6 1.0905 12.3073 0.1194 16 1 0.0044 12.3579 0.1976 17 6 1.8589 13.3723 0.9043 18 6 3.3322 3.6802 -0.0048 19 6 4.0753 2.5216 0.0011 20 6 3.4405 1.2842 0.0010 21 8 4.1776 0.1459 0.0015 22 6 5.5132 0.2817 -0.1156 23 1 5.9573 1.2662 -0.1219 24 6 6.3174 -0.8428 -0.2279 25 7 7.6209 -0.7103 -0.3417 26 14 5.5491 -2.5454 -0.2175 27 1 5.2188 -2.9480 -1.6082 28 1 6.5085 -3.5179 0.3647 29 1 4.3091 -2.5240 0.5993 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3635 -1.0276 -0.0005 33 1 0.2157 2.3144 -0.0015 34 1 0.0595 4.7987 0.0000 35 1 2.8350 6.1031 0.0004 36 1 2.5508 8.5260 0.0007 37 1 0.1602 9.7387 0.8909 38 1 0.1608 9.7391 -0.8891 39 1 0.9849 11.5981 -2.0146 40 1 2.6185 12.3067 -1.5341 41 1 1.2919 14.3033 0.9046 42 1 2.0027 13.0342 1.9305 43 1 2.8296 13.5383 0.4370 44 1 3.8279 4.6396 -0.0092 45 1 5.1541 2.5735 0.0012 46 1 8.1834 -1.4967 -0.4206 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032381741.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:47 Heat of formation + Delta-G solvation = -57.174561 kcal Electronic energy + Delta-G solvation = -26362.319992 eV Core-core repulsion = 22411.550283 eV Total energy + Delta-G solvation = -3950.769709 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.42309 -40.73189 -39.43501 -38.94620 -38.13933 -35.36295 -34.67547 -34.08032 -31.35051 -30.64509 -29.81039 -28.08373 -27.61061 -26.93256 -24.54068 -23.35004 -22.33662 -22.10961 -21.44123 -20.31636 -19.90589 -19.51294 -18.27944 -17.83596 -17.13029 -16.94033 -16.73679 -16.30339 -16.28451 -15.86864 -15.56934 -15.43152 -15.34798 -15.12815 -14.95863 -14.60793 -14.24493 -14.05328 -13.91921 -13.85956 -13.39170 -13.29885 -13.07117 -12.96303 -12.74896 -12.55492 -12.34977 -12.24529 -12.14766 -12.10918 -12.05353 -11.43699 -11.19097 -11.06328 -11.01933 -10.69928 -10.61483 -10.03887 -9.51052 -8.60794 -8.52810 -6.19836 -0.35778 0.49333 1.06334 1.30887 1.35216 1.53141 2.19515 2.27827 2.32075 2.48493 2.78618 2.83349 2.94397 3.10001 3.64448 3.69985 3.89256 3.89401 4.00905 4.08669 4.21320 4.25925 4.30594 4.37247 4.44150 4.45351 4.48953 4.52627 4.61329 4.72330 4.73597 4.87969 4.92142 4.95334 4.97337 5.07366 5.12452 5.19425 5.22804 5.36828 5.43112 5.45859 5.50517 5.58451 5.74139 5.77073 6.00265 6.54232 6.58332 6.81523 7.25407 7.56389 8.57623 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.017938 B = 0.001953 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.549490 B =14334.541233 C =15741.294778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.341 6.341 3 C 0.050 3.950 4 C -0.134 4.134 5 C -0.121 4.121 6 C 0.010 3.990 7 C -0.235 4.235 8 C 0.548 3.452 9 O -0.594 6.594 10 N -0.713 5.713 11 C 0.153 3.847 12 C -0.168 4.168 13 H 0.122 0.878 14 C -0.171 4.171 15 C -0.146 4.146 16 H 0.105 0.895 17 C -0.123 4.123 18 C -0.071 4.071 19 C -0.208 4.208 20 C 0.108 3.892 21 O -0.229 6.229 22 C -0.399 4.399 23 H 0.092 0.908 24 C 0.017 3.983 25 N -0.913 5.913 26 Si 0.962 3.038 27 H -0.268 1.268 28 H -0.265 1.265 29 H -0.268 1.268 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.161 0.839 34 H 0.130 0.870 35 H 0.152 0.848 36 H 0.417 0.583 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.155 0.845 45 H 0.129 0.871 46 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.223 22.030 0.699 25.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.256 6.256 3 C 0.005 3.995 4 C -0.153 4.153 5 C -0.122 4.122 6 C -0.010 4.010 7 C -0.255 4.255 8 C 0.339 3.661 9 O -0.478 6.478 10 N -0.364 5.364 11 C 0.029 3.971 12 C -0.186 4.186 13 H 0.140 0.860 14 C -0.208 4.208 15 C -0.164 4.164 16 H 0.123 0.877 17 C -0.180 4.180 18 C -0.089 4.089 19 C -0.227 4.227 20 C 0.057 3.943 21 O -0.136 6.136 22 C -0.475 4.475 23 H 0.110 0.890 24 C -0.183 4.183 25 N -0.552 5.552 26 Si 0.785 3.215 27 H -0.193 1.193 28 H -0.189 1.189 29 H -0.192 1.192 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.131 0.869 33 H 0.178 0.822 34 H 0.148 0.852 35 H 0.169 0.831 36 H 0.254 0.746 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.112 0.888 40 H 0.124 0.876 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.172 0.828 45 H 0.146 0.854 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.825 21.499 0.699 25.570 hybrid contribution 0.529 -0.712 -0.070 0.890 sum -13.297 20.787 0.629 24.684 Atomic orbital electron populations 1.23326 0.76753 1.05262 1.02291 1.86138 1.23200 1.26474 1.89828 1.18246 0.88610 0.85995 1.06684 1.21298 1.00389 0.89840 1.03737 1.18581 0.92762 0.92304 1.08543 1.22153 0.99434 0.90303 0.89134 1.22843 1.01192 0.91090 1.10410 1.18525 0.87189 0.84940 0.75423 1.90777 1.15839 1.88337 1.52817 1.45771 1.11260 1.04811 1.74550 1.20839 0.93065 0.81843 1.01358 1.22518 1.01169 0.90264 1.04645 0.86031 1.23333 1.03385 1.02736 0.91296 1.22473 0.99909 0.94313 0.99749 0.87712 1.21389 0.99714 0.97319 0.99594 1.21293 0.92741 0.97864 0.96992 1.21067 1.00958 0.91224 1.09492 1.19254 0.89094 0.87239 0.98679 1.83550 1.19462 1.28887 1.81689 1.20828 0.78342 0.96657 1.51651 0.89039 1.25170 0.94971 1.02704 0.95422 1.69688 1.04005 1.32806 1.48746 0.85329 0.78622 0.78170 0.79351 1.19299 1.18942 1.19230 0.91482 0.91504 0.86877 0.82167 0.85178 0.83102 0.74635 0.92130 0.92363 0.88821 0.87598 0.91408 0.91992 0.92004 0.82762 0.85376 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.81 113.37 1.11 1.55 16 2 O -0.34 -13.18 10.28 -78.95 -0.81 -13.99 16 3 C 0.05 1.97 6.70 22.57 0.15 2.13 16 4 C -0.13 -4.18 8.77 22.65 0.20 -3.98 16 5 C -0.12 -3.59 5.87 -20.14 -0.12 -3.71 16 6 C 0.01 0.24 9.45 23.82 0.23 0.47 16 7 C -0.23 -5.16 9.41 23.61 0.22 -4.94 16 8 C 0.55 13.15 7.74 86.33 0.67 13.81 16 9 O -0.59 -18.90 16.23 -4.41 -0.07 -18.97 16 10 N -0.71 -12.08 5.55 -467.50 -2.60 -14.67 16 11 C 0.15 2.44 5.96 86.38 0.51 2.96 16 12 C -0.17 -1.83 5.57 -10.77 -0.06 -1.89 16 13 H 0.12 1.09 8.04 -2.39 -0.02 1.08 16 14 C -0.17 -1.70 9.83 30.62 0.30 -1.40 16 15 C -0.15 -1.46 6.12 -10.79 -0.07 -1.53 16 16 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 17 C -0.12 -0.98 10.19 71.98 0.73 -0.25 16 18 C -0.07 -2.25 9.40 22.57 0.21 -2.04 16 19 C -0.21 -8.58 9.14 22.33 0.20 -8.38 16 20 C 0.11 5.04 6.67 22.80 0.15 5.20 16 21 O -0.23 -12.58 8.35 -6.51 -0.05 -12.64 16 22 C -0.40 -23.02 9.94 67.93 0.68 -22.35 16 23 H 0.09 5.37 5.42 -2.91 -0.02 5.35 16 24 C 0.02 0.98 5.49 84.85 0.47 1.44 16 25 N -0.91 -53.24 13.96 21.62 0.30 -52.93 16 26 Si 0.96 45.89 28.62 68.60 1.96 47.85 16 27 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 28 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 29 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 30 H 0.07 1.38 7.66 -2.39 -0.02 1.36 16 31 H 0.07 1.38 7.66 -2.39 -0.02 1.36 16 32 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.16 3.84 6.28 -2.91 -0.02 3.82 16 34 H 0.13 3.23 7.52 -2.91 -0.02 3.20 16 35 H 0.15 2.57 6.06 -2.91 -0.02 2.56 16 36 H 0.42 4.65 8.38 -92.71 -0.78 3.87 16 37 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.06 1.06 7.87 -2.38 -0.02 1.04 16 39 H 0.09 0.99 8.03 -2.39 -0.02 0.97 16 40 H 0.11 0.87 8.05 -2.39 -0.02 0.85 16 41 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 42 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.06 0.44 7.90 -2.39 -0.02 0.42 16 44 H 0.15 3.71 6.15 -2.91 -0.02 3.69 16 45 H 0.13 5.63 5.62 -2.91 -0.02 5.62 16 46 H 0.29 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -72.91 390.02 4.56 -68.35 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.24 Total: 19.93 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: 5.59 Total: -22.92 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: -2.29 Total: -67.61 kcal Atomic # 8 Polarization: -44.66 SS G_CDS: -0.94 Total: -45.60 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.96 Total: 47.85 kcal Total: -72.91 4.56 -68.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032381741.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.174 kcal (2) G-P(sol) polarization free energy of solvation -72.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds