Wall clock time and date at job start Tue Mar 31 2020 17:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35954 * 116.99690 * 2 1 4 4 C 1.38083 * 120.00178 * 0.02562 * 3 2 1 5 5 C 1.39979 * 119.83568 * 179.97438 * 4 3 2 6 6 C 1.46964 * 120.07502 * 179.97438 * 5 4 3 7 7 C 1.35027 * 120.00043 * 180.02562 * 6 5 4 8 8 C 1.46252 * 120.00048 * 180.02562 * 7 6 5 9 9 O 1.21731 * 120.00099 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00143 * 179.97438 * 8 7 6 11 11 C 1.46494 * 120.00188 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47413 * 180.02562 * 11 10 8 13 13 H 1.09000 * 115.54654 * 330.59130 * 12 11 10 14 14 C 1.53001 * 117.49580 * 116.25179 * 12 11 10 15 15 C 1.52998 * 117.50027 * 184.91224 * 12 11 10 16 16 H 1.09001 * 117.49521 * 145.02322 * 15 12 11 17 17 C 1.52992 * 117.50135 * 0.02562 * 15 12 11 18 18 C 1.40023 * 119.84460 * 0.02562 * 5 4 3 19 19 C 1.37641 * 120.00180 * 359.97438 * 18 5 4 20 20 C 1.39058 * 120.16113 * 359.72705 * 19 18 5 21 21 O 1.35620 * 119.92195 * 180.29786 * 20 19 18 22 22 C 1.34752 * 116.99986 * 354.37899 * 21 20 19 23 23 H 1.08004 * 120.00413 * 5.06444 * 22 21 20 24 24 C 1.38707 * 120.00200 * 185.06395 * 22 21 20 25 25 N 1.31519 * 119.99707 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00476 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46706 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47369 * 119.99811 * 26 24 22 29 29 H 1.48503 * 109.47138 * 240.00154 * 26 24 22 30 30 H 1.08993 * 109.47144 * 59.99450 * 1 2 3 31 31 H 1.08997 * 109.46941 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46595 * 299.99232 * 1 2 3 33 33 H 1.07998 * 120.07991 * 359.97438 * 4 3 2 34 34 H 1.08003 * 120.00251 * 0.02562 * 6 5 4 35 35 H 1.07994 * 119.99975 * 359.97438 * 7 6 5 36 36 H 0.96996 * 119.99878 * 0.02562 * 10 8 7 37 37 H 1.09001 * 109.47505 * 300.00302 * 11 10 8 38 38 H 1.09009 * 109.47255 * 60.00456 * 11 10 8 39 39 H 1.09004 * 117.49867 * 214.97918 * 14 12 11 40 40 H 1.08993 * 117.49960 * 359.97438 * 14 12 11 41 41 H 1.09003 * 109.47210 * 59.99253 * 17 15 12 42 42 H 1.09002 * 109.47606 * 179.97438 * 17 15 12 43 43 H 1.09006 * 109.47055 * 299.99875 * 17 15 12 44 44 H 1.08004 * 119.99906 * 180.02562 * 18 5 4 45 45 H 1.08002 * 119.92382 * 179.97438 * 19 18 5 46 46 H 0.97007 * 120.00123 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2941 2.3694 0.0005 5 6 1.9332 3.6148 0.0011 6 6 1.1379 4.8507 0.0011 7 6 1.7559 6.0512 0.0011 8 6 0.9644 7.2811 0.0016 9 8 -0.2515 7.2225 0.0016 10 7 1.5813 8.4795 0.0022 11 6 0.7885 9.7114 0.0022 12 6 1.7255 10.9209 0.0022 13 1 2.6907 10.7679 0.4851 14 6 1.6836 11.8470 -1.2150 15 6 1.0893 12.3075 0.1184 16 1 1.6361 13.0668 0.6775 17 6 -0.4352 12.3785 0.2263 18 6 3.3319 3.6803 0.0005 19 6 4.0751 2.5219 0.0000 20 6 3.4405 1.2846 0.0057 21 8 4.1776 0.1462 0.0113 22 6 5.5131 0.2816 -0.1067 23 1 5.9573 1.2660 -0.1176 24 6 6.3175 -0.8434 -0.2140 25 7 5.7767 -2.0421 -0.2001 26 14 8.1689 -0.6558 -0.3768 27 1 8.5231 0.7863 -0.3659 28 1 8.8375 -1.3388 0.7596 29 1 8.6178 -1.2657 -1.6543 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5137 0.8900 33 1 0.2156 2.3144 0.0005 34 1 0.0591 4.7987 0.0011 35 1 2.8346 6.1033 0.0015 36 1 2.5501 8.5262 0.0018 37 1 0.1601 9.7391 -0.8880 38 1 0.1595 9.7387 0.8920 39 1 2.6210 12.3036 -1.5326 40 1 0.9888 11.5943 -2.0159 41 1 -0.7623 11.8361 1.1134 42 1 -0.7460 13.4204 0.3027 43 1 -0.8835 11.9292 -0.6600 44 1 3.8275 4.6399 0.0014 45 1 5.1539 2.5739 -0.0008 46 1 6.3391 -2.8289 -0.2756 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032381743.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:55 Heat of formation + Delta-G solvation = -39.164707 kcal Electronic energy + Delta-G solvation = -26439.161698 eV Core-core repulsion = 22489.172956 eV Total energy + Delta-G solvation = -3949.988743 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.83222 -39.59001 -38.33048 -37.67748 -36.56002 -34.29891 -33.04580 -32.24595 -29.77439 -29.23151 -28.71121 -27.34119 -26.36013 -25.47977 -23.25395 -21.96146 -21.77487 -20.90643 -20.30614 -19.00644 -18.21326 -17.75838 -16.93026 -16.73135 -16.05878 -15.45527 -15.29420 -15.20721 -14.94471 -14.73370 -14.36581 -13.99121 -13.92060 -13.70598 -13.60030 -13.46555 -13.35509 -13.21296 -12.55802 -12.38767 -12.16449 -11.92884 -11.81277 -11.71812 -11.56722 -11.45328 -11.14045 -11.03942 -10.79325 -10.68882 -10.50387 -10.43513 -10.38379 -9.77288 -9.58090 -9.43779 -9.09443 -8.82983 -7.99049 -6.92109 -6.62619 -4.13900 1.02127 2.10496 2.53256 3.04052 3.05128 3.08295 3.11037 3.43654 3.58368 3.82192 3.93848 4.21636 4.43894 4.45931 4.46463 4.83104 4.89067 4.91456 4.99070 5.02164 5.21779 5.25222 5.38381 5.41994 5.42340 5.49080 5.52085 5.54239 5.57746 5.61450 5.64641 5.70756 5.80649 5.83107 5.90695 5.99269 6.19884 6.36541 6.42312 6.47718 6.58569 6.83933 6.99828 7.08218 7.25273 7.46184 7.55521 7.77994 8.06978 8.34164 8.80599 9.49591 10.53275 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015054 B = 0.002031 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.506510 B =13784.236392 C =15539.688050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.052 3.948 4 C -0.136 4.136 5 C -0.166 4.166 6 C 0.035 3.965 7 C -0.278 4.278 8 C 0.555 3.445 9 O -0.560 6.560 10 N -0.732 5.732 11 C 0.154 3.846 12 C -0.168 4.168 13 H 0.110 0.890 14 C -0.173 4.173 15 C -0.144 4.144 16 H 0.106 0.894 17 C -0.127 4.127 18 C -0.059 4.059 19 C -0.225 4.225 20 C 0.148 3.852 21 O -0.148 6.148 22 C -0.390 4.390 23 H 0.098 0.902 24 C 0.041 3.959 25 N -0.844 5.844 26 Si 0.945 3.055 27 H -0.264 1.264 28 H -0.274 1.274 29 H -0.274 1.274 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.401 0.599 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.116 0.884 45 H 0.137 0.863 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.489 21.161 0.036 22.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.007 3.993 4 C -0.156 4.156 5 C -0.168 4.168 6 C 0.016 3.984 7 C -0.299 4.299 8 C 0.347 3.653 9 O -0.441 6.441 10 N -0.383 5.383 11 C 0.030 3.970 12 C -0.186 4.186 13 H 0.128 0.872 14 C -0.210 4.210 15 C -0.163 4.163 16 H 0.124 0.876 17 C -0.184 4.184 18 C -0.078 4.078 19 C -0.244 4.244 20 C 0.092 3.908 21 O -0.048 6.048 22 C -0.466 4.466 23 H 0.115 0.885 24 C -0.166 4.166 25 N -0.476 5.476 26 Si 0.769 3.231 27 H -0.188 1.188 28 H -0.199 1.199 29 H -0.199 1.199 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.066 0.934 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.235 0.765 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.134 0.866 45 H 0.155 0.845 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.234 20.405 0.041 21.649 hybrid contribution 1.287 0.352 -0.075 1.336 sum -5.947 20.757 -0.034 21.592 Atomic orbital electron populations 1.22918 0.80161 1.03076 1.00431 1.86237 1.19581 1.26194 1.89715 1.18049 0.89381 0.84610 1.07280 1.20888 0.98613 0.90922 1.05138 1.18172 0.92785 0.91413 1.14384 1.22233 0.99129 0.90961 0.86127 1.22454 0.99817 0.91622 1.16026 1.18415 0.87655 0.83902 0.75363 1.90774 1.14281 1.87782 1.51280 1.45843 1.10231 1.05411 1.76857 1.20771 0.92703 0.81413 1.02127 1.22562 1.01101 0.91248 1.03686 0.87175 1.23241 1.03050 1.03282 0.91452 1.22379 0.96517 0.96614 1.00801 0.87593 1.21390 0.92645 1.02078 1.02334 1.20929 0.92496 0.97363 0.96997 1.20835 1.00719 0.90747 1.12137 1.18886 0.88277 0.87658 0.96012 1.83989 1.19741 1.25880 1.75235 1.21565 0.78378 0.95084 1.51566 0.88460 1.25418 1.00901 0.94151 0.96122 1.70058 1.36560 0.97806 1.43216 0.85582 0.79923 0.79099 0.78475 1.18833 1.19924 1.19918 0.93427 0.88963 0.93439 0.85841 0.85986 0.85777 0.76521 0.91569 0.91276 0.88638 0.88475 0.91866 0.92020 0.92245 0.86601 0.84503 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.81 101.05 0.99 1.43 16 2 O -0.30 -6.47 10.28 -34.21 -0.35 -6.82 16 3 C 0.05 1.11 6.70 -39.12 -0.26 0.85 16 4 C -0.14 -2.46 8.77 -38.99 -0.34 -2.80 16 5 C -0.17 -2.87 5.87 -105.04 -0.62 -3.49 16 6 C 0.04 0.54 9.45 -37.19 -0.35 0.19 16 7 C -0.28 -3.83 9.41 -37.50 -0.35 -4.19 16 8 C 0.55 7.88 7.74 -13.04 -0.10 7.78 16 9 O -0.56 -9.90 16.23 5.16 0.08 -9.82 16 10 N -0.73 -7.73 5.55 -61.75 -0.34 -8.07 16 11 C 0.15 1.46 5.04 -4.04 -0.02 1.44 16 12 C -0.17 -1.18 5.84 -90.62 -0.53 -1.71 16 13 H 0.11 0.69 8.04 -51.93 -0.42 0.27 16 14 C -0.17 -1.11 9.83 -26.69 -0.26 -1.37 16 15 C -0.14 -0.91 6.41 -90.59 -0.58 -1.49 16 16 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 17 C -0.13 -0.79 9.20 37.15 0.34 -0.44 16 18 C -0.06 -1.04 9.40 -39.13 -0.37 -1.41 16 19 C -0.22 -4.63 9.14 -39.50 -0.36 -4.99 16 20 C 0.15 3.53 6.67 -38.76 -0.26 3.27 16 21 O -0.15 -4.14 9.52 -13.94 -0.13 -4.27 16 22 C -0.39 -10.45 9.48 30.91 0.29 -10.15 16 23 H 0.10 2.36 5.18 -52.48 -0.27 2.09 16 24 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 25 N -0.84 -23.95 13.67 55.48 0.76 -23.19 16 26 Si 0.95 19.49 29.55 -169.99 -5.02 14.47 16 27 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 28 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 29 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 30 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 33 H 0.12 1.88 6.28 -52.49 -0.33 1.55 16 34 H 0.12 1.85 7.52 -52.48 -0.39 1.46 16 35 H 0.12 1.47 6.06 -52.49 -0.32 1.15 16 36 H 0.40 3.20 8.38 -40.82 -0.34 2.86 16 37 H 0.07 0.69 7.87 -51.93 -0.41 0.28 16 38 H 0.07 0.72 7.77 -51.92 -0.40 0.32 16 39 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.10 0.64 7.94 -51.93 -0.41 0.23 16 41 H 0.06 0.41 7.84 -51.93 -0.41 0.00 16 42 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 44 H 0.12 1.66 6.15 -52.48 -0.32 1.34 16 45 H 0.14 2.74 5.61 -52.49 -0.29 2.45 16 46 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 389.13 15.07 5.86 5.86 Total: -1.00 -32.61 389.13 -8.38 -40.98 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.35 Total: 6.95 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -2.88 Total: -16.10 kcal Atomic # 7 Polarization: -31.67 SS G_CDS: 0.42 Total: -31.26 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.40 Total: -20.91 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.61 -8.38 -40.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032381743.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.816 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds