Wall clock time and date at job start Tue Mar 31 2020 17:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35954 * 116.99690 * 2 1 4 4 C 1.38083 * 120.00178 * 0.02562 * 3 2 1 5 5 C 1.39979 * 119.83568 * 179.97438 * 4 3 2 6 6 C 1.46964 * 120.07502 * 179.97438 * 5 4 3 7 7 C 1.35027 * 120.00043 * 180.02562 * 6 5 4 8 8 C 1.46252 * 120.00048 * 180.02562 * 7 6 5 9 9 O 1.21731 * 120.00099 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00143 * 179.97438 * 8 7 6 11 11 C 1.46494 * 120.00188 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47413 * 180.02562 * 11 10 8 13 13 H 1.09000 * 115.54654 * 330.59130 * 12 11 10 14 14 C 1.53001 * 117.49580 * 116.25179 * 12 11 10 15 15 C 1.52998 * 117.50027 * 184.91224 * 12 11 10 16 16 H 1.09001 * 117.49521 * 145.02322 * 15 12 11 17 17 C 1.52992 * 117.50135 * 0.02562 * 15 12 11 18 18 C 1.40023 * 119.84460 * 0.02562 * 5 4 3 19 19 C 1.37641 * 120.00180 * 359.97438 * 18 5 4 20 20 C 1.39058 * 120.16113 * 359.72705 * 19 18 5 21 21 O 1.35620 * 119.92195 * 180.29786 * 20 19 18 22 22 C 1.34752 * 116.99986 * 354.37899 * 21 20 19 23 23 H 1.08004 * 120.00413 * 5.06444 * 22 21 20 24 24 C 1.38707 * 120.00200 * 185.06395 * 22 21 20 25 25 N 1.31519 * 119.99707 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00476 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46706 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47369 * 119.99811 * 26 24 22 29 29 H 1.48503 * 109.47138 * 240.00154 * 26 24 22 30 30 H 1.08993 * 109.47144 * 59.99450 * 1 2 3 31 31 H 1.08997 * 109.46941 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46595 * 299.99232 * 1 2 3 33 33 H 1.07998 * 120.07991 * 359.97438 * 4 3 2 34 34 H 1.08003 * 120.00251 * 0.02562 * 6 5 4 35 35 H 1.07994 * 119.99975 * 359.97438 * 7 6 5 36 36 H 0.96996 * 119.99878 * 0.02562 * 10 8 7 37 37 H 1.09001 * 109.47505 * 300.00302 * 11 10 8 38 38 H 1.09009 * 109.47255 * 60.00456 * 11 10 8 39 39 H 1.09004 * 117.49867 * 214.97918 * 14 12 11 40 40 H 1.08993 * 117.49960 * 359.97438 * 14 12 11 41 41 H 1.09003 * 109.47210 * 59.99253 * 17 15 12 42 42 H 1.09002 * 109.47606 * 179.97438 * 17 15 12 43 43 H 1.09006 * 109.47055 * 299.99875 * 17 15 12 44 44 H 1.08004 * 119.99906 * 180.02562 * 18 5 4 45 45 H 1.08002 * 119.92382 * 179.97438 * 19 18 5 46 46 H 0.97007 * 120.00123 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2941 2.3694 0.0005 5 6 1.9332 3.6148 0.0011 6 6 1.1379 4.8507 0.0011 7 6 1.7559 6.0512 0.0011 8 6 0.9644 7.2811 0.0016 9 8 -0.2515 7.2225 0.0016 10 7 1.5813 8.4795 0.0022 11 6 0.7885 9.7114 0.0022 12 6 1.7255 10.9209 0.0022 13 1 2.6907 10.7679 0.4851 14 6 1.6836 11.8470 -1.2150 15 6 1.0893 12.3075 0.1184 16 1 1.6361 13.0668 0.6775 17 6 -0.4352 12.3785 0.2263 18 6 3.3319 3.6803 0.0005 19 6 4.0751 2.5219 0.0000 20 6 3.4405 1.2846 0.0057 21 8 4.1776 0.1462 0.0113 22 6 5.5131 0.2816 -0.1067 23 1 5.9573 1.2660 -0.1176 24 6 6.3175 -0.8434 -0.2140 25 7 5.7767 -2.0421 -0.2001 26 14 8.1689 -0.6558 -0.3768 27 1 8.5231 0.7863 -0.3659 28 1 8.8375 -1.3388 0.7596 29 1 8.6178 -1.2657 -1.6543 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5137 0.8900 33 1 0.2156 2.3144 0.0005 34 1 0.0591 4.7987 0.0011 35 1 2.8346 6.1033 0.0015 36 1 2.5501 8.5262 0.0018 37 1 0.1601 9.7391 -0.8880 38 1 0.1595 9.7387 0.8920 39 1 2.6210 12.3036 -1.5326 40 1 0.9888 11.5943 -2.0159 41 1 -0.7623 11.8361 1.1134 42 1 -0.7460 13.4204 0.3027 43 1 -0.8835 11.9292 -0.6600 44 1 3.8275 4.6399 0.0014 45 1 5.1539 2.5739 -0.0008 46 1 6.3391 -2.8289 -0.2756 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032381743.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:54 Heat of formation + Delta-G solvation = -59.662217 kcal Electronic energy + Delta-G solvation = -26440.050537 eV Core-core repulsion = 22489.172956 eV Total energy + Delta-G solvation = -3950.877581 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.32445 -40.73100 -39.31379 -39.02418 -38.06525 -35.28846 -34.62475 -33.88902 -31.29542 -30.37965 -29.52147 -28.34129 -27.66221 -27.18769 -24.57531 -23.32781 -22.51253 -22.19508 -21.10080 -20.07720 -19.91854 -19.32354 -18.11728 -17.79825 -17.26030 -16.92534 -16.68117 -16.33641 -16.29673 -15.88245 -15.57341 -15.54143 -15.27877 -15.04605 -14.74127 -14.62088 -14.29034 -13.92998 -13.81697 -13.65843 -13.32348 -13.21532 -13.10242 -12.87536 -12.71792 -12.49814 -12.42142 -12.13749 -12.13158 -12.12054 -12.00787 -11.34831 -11.15052 -11.00505 -10.99603 -10.69994 -10.52908 -10.02085 -9.47420 -8.53173 -8.47061 -6.11538 -0.31116 0.54569 1.10630 1.37379 1.47135 1.56287 2.17160 2.21531 2.34840 2.55251 2.83980 2.86885 3.14498 3.35782 3.65697 3.73822 3.90673 3.92589 3.95290 4.13956 4.23440 4.27524 4.32547 4.39608 4.41889 4.44644 4.52268 4.61543 4.63869 4.70839 4.72894 4.90640 4.91841 4.93508 4.98439 5.07924 5.11576 5.14771 5.24026 5.29674 5.42210 5.45213 5.51605 5.52018 5.77578 5.92200 5.98118 6.59077 6.60402 6.95523 7.27294 7.75869 8.74866 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015054 B = 0.002031 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.506510 B =13784.236392 C =15539.688050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.344 6.344 3 C 0.038 3.962 4 C -0.134 4.134 5 C -0.133 4.133 6 C 0.012 3.988 7 C -0.237 4.237 8 C 0.548 3.452 9 O -0.596 6.596 10 N -0.713 5.713 11 C 0.154 3.846 12 C -0.170 4.170 13 H 0.125 0.875 14 C -0.171 4.171 15 C -0.143 4.143 16 H 0.119 0.881 17 C -0.130 4.130 18 C -0.065 4.065 19 C -0.218 4.218 20 C 0.101 3.899 21 O -0.212 6.212 22 C -0.414 4.414 23 H 0.111 0.889 24 C -0.023 4.023 25 N -0.914 5.914 26 Si 1.022 2.978 27 H -0.245 1.245 28 H -0.270 1.270 29 H -0.270 1.270 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.155 0.845 34 H 0.126 0.874 35 H 0.154 0.846 36 H 0.417 0.583 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.052 0.948 44 H 0.159 0.841 45 H 0.138 0.862 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.564 25.967 0.025 26.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.259 6.259 3 C -0.007 4.007 4 C -0.153 4.153 5 C -0.134 4.134 6 C -0.008 4.008 7 C -0.258 4.258 8 C 0.339 3.661 9 O -0.479 6.479 10 N -0.364 5.364 11 C 0.030 3.970 12 C -0.188 4.188 13 H 0.143 0.857 14 C -0.208 4.208 15 C -0.161 4.161 16 H 0.137 0.863 17 C -0.187 4.187 18 C -0.083 4.083 19 C -0.237 4.237 20 C 0.049 3.951 21 O -0.118 6.118 22 C -0.490 4.490 23 H 0.128 0.872 24 C -0.221 4.221 25 N -0.551 5.551 26 Si 0.841 3.159 27 H -0.168 1.168 28 H -0.195 1.195 29 H -0.196 1.196 30 H 0.083 0.917 31 H 0.128 0.872 32 H 0.084 0.916 33 H 0.172 0.828 34 H 0.144 0.856 35 H 0.171 0.829 36 H 0.254 0.746 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.126 0.874 40 H 0.110 0.890 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.176 0.824 45 H 0.155 0.845 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.333 25.318 0.033 26.358 hybrid contribution 0.826 -0.533 -0.061 0.985 sum -6.507 24.785 -0.028 25.625 Atomic orbital electron populations 1.23275 0.77103 1.04983 1.02072 1.86191 1.22947 1.26861 1.89885 1.18384 0.89153 0.85793 1.07382 1.21260 1.00100 0.90074 1.03898 1.18534 0.93046 0.91990 1.09799 1.22129 0.99269 0.90450 0.88989 1.22802 1.01200 0.90898 1.10891 1.18551 0.87187 0.84976 0.75387 1.90779 1.15929 1.88356 1.52872 1.45761 1.11255 1.04777 1.74611 1.20797 0.93106 0.81879 1.01215 1.22503 1.01182 0.90426 1.04695 0.85744 1.23294 1.03516 1.02816 0.91202 1.22480 0.96482 0.96284 1.00883 0.86322 1.21412 0.92866 1.02667 1.01751 1.21298 0.92550 0.97952 0.96529 1.21040 1.01131 0.90784 1.10734 1.19586 0.89539 0.88167 0.97816 1.83977 1.20267 1.27861 1.79686 1.22033 0.78809 0.95917 1.52246 0.87198 1.26695 1.06200 0.93547 0.95701 1.70214 1.38466 0.98825 1.47630 0.84488 0.73122 0.79968 0.78370 1.16756 1.19511 1.19562 0.91660 0.87226 0.91599 0.82780 0.85624 0.82887 0.74599 0.92595 0.92201 0.87388 0.89020 0.92383 0.90968 0.92920 0.82402 0.84477 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.81 113.37 1.11 1.69 16 2 O -0.34 -15.24 10.28 -79.05 -0.81 -16.05 16 3 C 0.04 1.66 6.70 22.57 0.15 1.81 16 4 C -0.13 -4.62 8.77 22.66 0.20 -4.42 16 5 C -0.13 -4.16 5.87 -20.14 -0.12 -4.28 16 6 C 0.01 0.31 9.45 23.82 0.23 0.53 16 7 C -0.24 -5.34 9.41 23.61 0.22 -5.12 16 8 C 0.55 13.42 7.74 86.33 0.67 14.08 16 9 O -0.60 -19.43 16.23 -4.45 -0.07 -19.50 16 10 N -0.71 -12.18 5.55 -467.48 -2.59 -14.78 16 11 C 0.15 2.50 5.04 86.38 0.43 2.94 16 12 C -0.17 -1.82 5.84 -10.79 -0.06 -1.88 16 13 H 0.12 1.01 8.04 -2.39 -0.02 0.99 16 14 C -0.17 -1.66 9.83 30.62 0.30 -1.36 16 15 C -0.14 -1.38 6.41 -10.77 -0.07 -1.44 16 16 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 17 C -0.13 -1.35 9.20 71.98 0.66 -0.68 16 18 C -0.07 -2.09 9.40 22.56 0.21 -1.87 16 19 C -0.22 -8.91 9.14 22.33 0.20 -8.71 16 20 C 0.10 5.02 6.67 22.80 0.15 5.17 16 21 O -0.21 -12.82 9.52 -6.54 -0.06 -12.88 16 22 C -0.41 -23.57 9.48 67.93 0.64 -22.93 16 23 H 0.11 5.56 5.18 -2.91 -0.02 5.55 16 24 C -0.02 -1.29 5.49 84.85 0.47 -0.83 16 25 N -0.91 -55.98 13.67 21.62 0.30 -55.69 16 26 Si 1.02 41.63 29.55 68.60 2.03 43.66 16 27 H -0.24 -8.96 7.11 99.48 0.71 -8.25 16 28 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 29 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 30 H 0.06 1.63 7.66 -2.39 -0.02 1.61 16 31 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.07 1.63 7.66 -2.39 -0.02 1.61 16 33 H 0.15 4.25 6.28 -2.91 -0.02 4.23 16 34 H 0.13 3.36 7.52 -2.91 -0.02 3.33 16 35 H 0.15 2.58 6.06 -2.91 -0.02 2.56 16 36 H 0.42 4.54 8.38 -92.71 -0.78 3.77 16 37 H 0.06 1.05 7.87 -2.39 -0.02 1.04 16 38 H 0.06 1.12 7.77 -2.38 -0.02 1.10 16 39 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.09 1.00 7.94 -2.39 -0.02 0.98 16 41 H 0.06 0.66 7.84 -2.39 -0.02 0.64 16 42 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.05 0.61 7.90 -2.38 -0.02 0.59 16 44 H 0.16 3.64 6.15 -2.91 -0.02 3.62 16 45 H 0.14 5.50 5.61 -2.91 -0.02 5.49 16 46 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 Total: -1.00 -78.59 389.13 4.42 -74.17 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 0.24 Total: 28.37 kcal Atomic # 6 Polarization: -32.70 SS G_CDS: 5.40 Total: -27.30 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: -2.30 Total: -70.46 kcal Atomic # 8 Polarization: -47.49 SS G_CDS: -0.95 Total: -48.44 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -78.59 4.42 -74.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032381743.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.509 kcal (2) G-P(sol) polarization free energy of solvation -78.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds