Wall clock time and date at job start Tue Mar 31 2020 17:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.49846 * 2 1 4 4 C 1.53041 * 109.52598 * 239.92215 * 2 1 3 5 5 C 1.53037 * 109.53737 * 178.66958 * 4 2 1 6 6 C 1.52765 * 109.38844 * 61.23557 * 5 4 2 7 7 N 1.46924 * 109.00715 * 305.59183 * 6 5 4 8 8 C 1.34776 * 120.62628 * 233.58074 * 7 6 5 9 9 O 1.21284 * 119.99434 * 179.71796 * 8 7 6 10 10 C 1.50693 * 120.00411 * 359.72313 * 8 7 6 11 11 O 1.45196 * 109.47469 * 180.02562 * 10 8 7 12 12 C 1.34709 * 117.00207 * 179.97438 * 11 10 8 13 13 O 1.21460 * 119.99692 * 0.02562 * 12 11 10 14 14 C 1.47767 * 119.99808 * 179.97438 * 12 11 10 15 15 C 1.39962 * 120.03417 * 0.02562 * 14 12 11 16 16 C 1.38317 * 120.35689 * 179.97438 * 15 14 12 17 17 C 1.37766 * 120.41329 * 359.97438 * 16 15 14 18 18 C 1.40746 * 120.05463 * 0.02562 * 17 16 15 19 19 C 1.41433 * 120.18002 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99684 * 24.34231 * 19 18 17 21 21 C 1.39928 * 120.00440 * 204.33884 * 19 18 17 22 22 N 1.30828 * 120.00002 * 17.72395 * 21 19 18 23 23 Si 1.86807 * 120.00391 * 197.71822 * 21 19 18 24 24 H 1.48497 * 109.46741 * 94.69019 * 23 21 19 25 25 H 1.48493 * 109.47453 * 214.69511 * 23 21 19 26 26 H 1.48499 * 109.46860 * 334.69497 * 23 21 19 27 27 C 1.39051 * 120.02601 * 179.72367 * 14 12 11 28 28 C 1.46924 * 118.73880 * 53.30378 * 7 6 5 29 29 H 1.08993 * 109.47115 * 299.93425 * 1 2 3 30 30 H 1.08998 * 109.47197 * 59.93756 * 1 2 3 31 31 H 1.08998 * 109.46867 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.45430 * 298.68342 * 4 2 1 33 33 H 1.08997 * 109.45890 * 58.64278 * 4 2 1 34 34 H 1.09003 * 109.49882 * 181.31263 * 5 4 2 35 35 H 1.09004 * 109.49705 * 301.37528 * 5 4 2 36 36 H 1.08997 * 109.51253 * 185.70582 * 6 5 4 37 37 H 1.08996 * 109.42631 * 65.42138 * 6 5 4 38 38 H 1.09002 * 109.47245 * 59.99278 * 10 8 7 39 39 H 1.09006 * 109.46609 * 300.00061 * 10 8 7 40 40 H 1.08002 * 119.82408 * 359.97438 * 15 14 12 41 41 H 1.07999 * 119.79520 * 179.97438 * 16 15 14 42 42 H 1.08003 * 119.96941 * 180.02562 * 17 16 15 43 43 H 0.97000 * 120.00332 * 179.97438 * 22 21 19 44 44 H 1.08001 * 120.20892 * 0.02562 * 27 14 12 45 45 H 1.08999 * 109.58881 * 66.43738 * 28 7 6 46 46 H 1.09007 * 109.58530 * 186.85769 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7229 -1.2482 5 6 3.5715 -0.6941 -1.2653 6 6 4.1063 -1.4203 -0.0323 7 7 3.5047 -0.8281 1.1702 8 6 4.2808 -0.3841 2.1787 9 8 3.7722 0.1075 3.1639 10 6 5.7802 -0.4984 2.0821 11 8 6.3856 0.0450 3.2848 12 6 7.7304 0.0181 3.3585 13 8 8.3795 -0.4462 2.4430 14 6 8.4157 0.5544 4.5528 15 6 7.6683 1.0900 5.6079 16 6 8.3029 1.5934 6.7291 17 6 9.6774 1.5730 6.8207 18 6 10.4460 1.0384 5.7698 19 6 11.8572 1.0156 5.8613 20 1 12.3358 1.0253 6.8295 21 6 12.6333 0.9803 4.6976 22 7 12.1044 1.3131 3.5482 23 14 14.4249 0.4584 4.7850 24 1 14.5331 -0.9918 4.4844 25 1 15.2144 1.2301 3.7920 26 1 14.9511 0.7218 6.1484 27 6 9.8036 0.5216 4.6319 28 6 2.0413 -0.7234 1.2498 29 1 -0.3633 0.5128 0.8905 30 1 -0.3633 0.5148 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6979 -1.7573 -1.2350 33 1 1.6588 -0.2246 -2.1388 34 1 3.9346 -1.1887 -2.1663 35 1 3.9161 0.3399 -1.2540 36 1 5.1902 -1.3142 0.0112 37 1 3.8424 -2.4763 -0.0906 38 1 6.1320 0.0591 1.2140 39 1 6.0587 -1.5471 1.9776 40 1 6.5902 1.1105 5.5464 41 1 7.7173 2.0050 7.5379 42 1 10.1654 1.9675 7.6997 43 1 12.6425 1.2890 2.7415 44 1 10.3844 0.1052 3.8222 45 1 1.6057 -1.7214 1.2982 46 1 1.7632 -0.1576 2.1390 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051535017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:03 Heat of formation + Delta-G solvation = -113.993092 kcal Electronic energy + Delta-G solvation = -27618.879020 eV Core-core repulsion = 23665.645475 eV Total energy + Delta-G solvation = -3953.233545 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.59640 -39.66026 -37.88402 -37.28841 -35.69311 -34.22962 -33.75032 -32.20948 -30.54766 -29.53060 -29.08871 -26.87345 -25.55665 -25.22868 -23.05340 -22.67194 -21.00299 -20.74157 -19.88496 -19.32923 -18.02311 -17.07924 -16.78893 -16.42180 -16.02329 -15.73010 -15.27106 -15.01214 -14.85104 -14.77779 -14.56932 -14.00123 -13.75317 -13.46639 -13.36247 -13.11255 -12.96266 -12.64626 -12.62263 -12.39360 -12.19551 -12.09639 -11.68028 -11.50488 -11.23322 -11.21137 -11.12690 -11.09759 -10.76778 -10.75202 -10.53089 -10.44057 -10.24477 -9.88265 -9.70960 -9.51547 -9.25360 -8.92110 -7.75180 -7.55310 -6.83267 -4.43886 1.94177 2.35827 2.44590 2.77696 3.06176 3.09833 3.13296 3.35694 3.55630 3.89796 4.19447 4.32585 4.42530 4.50398 4.57133 4.59405 4.84834 4.98361 5.07067 5.09647 5.10784 5.20942 5.29401 5.35502 5.39611 5.47127 5.54038 5.57822 5.60537 5.69726 5.74429 5.80563 5.98947 6.14017 6.22419 6.45869 6.58889 6.84745 6.93541 6.96980 7.07664 7.16698 7.30967 7.68838 7.75791 7.90658 7.98632 8.09841 8.43604 8.47426 8.76584 8.78748 10.12284 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.022253 B = 0.002322 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.934864 B =12054.411372 C =13081.241847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 H 0.075 0.925 4 C -0.114 4.114 5 C -0.138 4.138 6 C 0.102 3.898 7 N -0.614 5.614 8 C 0.520 3.480 9 O -0.512 6.512 10 C 0.049 3.951 11 O -0.332 6.332 12 C 0.514 3.486 13 O -0.518 6.518 14 C -0.115 4.115 15 C -0.189 4.189 16 C -0.104 4.104 17 C -0.199 4.199 18 C 0.094 3.906 19 C -0.460 4.460 20 H 0.083 0.917 21 C 0.073 3.927 22 N -0.788 5.788 23 Si 0.912 3.088 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.261 1.261 27 C -0.088 4.088 28 C 0.118 3.882 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.284 0.716 44 H 0.136 0.864 45 H 0.068 0.932 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.123 -5.291 -11.174 21.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 H 0.094 0.906 4 C -0.152 4.152 5 C -0.176 4.176 6 C -0.021 4.021 7 N -0.351 5.351 8 C 0.307 3.693 9 O -0.386 6.386 10 C -0.029 4.029 11 O -0.248 6.248 12 C 0.361 3.639 13 O -0.408 6.408 14 C -0.116 4.116 15 C -0.209 4.209 16 C -0.123 4.123 17 C -0.219 4.219 18 C 0.092 3.908 19 C -0.489 4.489 20 H 0.101 0.899 21 C -0.146 4.146 22 N -0.413 5.413 23 Si 0.736 3.264 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.185 1.185 27 C -0.108 4.108 28 C -0.004 4.004 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.125 0.875 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.095 0.905 44 H 0.154 0.846 45 H 0.086 0.914 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.141 -5.124 -11.154 21.083 hybrid contribution 0.819 -0.255 -0.441 0.964 sum -16.322 -5.379 -11.595 20.732 Atomic orbital electron populations 1.21757 0.94238 1.02071 1.02200 1.21531 0.96075 1.00329 0.94879 0.90621 1.21590 0.95086 1.00872 0.97651 1.21869 0.96293 1.01770 0.97660 1.21757 0.98664 0.97507 0.84170 1.47994 1.06789 1.62117 1.18151 1.20190 0.88425 0.77896 0.82779 1.90742 1.74926 1.42593 1.30376 1.22550 0.90333 1.01197 0.88832 1.86696 1.23227 1.75251 1.39653 1.22008 0.79033 0.75165 0.87648 1.90757 1.66232 1.44289 1.39510 1.18778 0.93736 1.06991 0.92123 1.20656 0.98095 1.07269 0.94859 1.20534 0.94582 1.00335 0.96820 1.21207 0.93156 1.06486 1.01002 1.17540 0.93580 0.89137 0.90578 1.19571 0.90690 1.44877 0.93770 0.89912 1.25963 1.01419 0.92379 0.94811 1.69783 1.38751 1.32721 1.00041 0.86240 0.81310 0.79577 0.79291 1.19230 1.20212 1.18492 1.21653 0.90243 0.98797 1.00077 1.21669 0.78681 1.00877 0.99188 0.92253 0.92268 0.92453 0.91640 0.91519 0.90275 0.91207 0.89418 0.90828 0.88504 0.88531 0.87512 0.88416 0.88284 0.90474 0.84631 0.91381 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.20 37.16 0.34 -0.50 16 2 C -0.11 -0.79 2.87 -90.50 -0.26 -1.05 16 3 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.11 -0.68 5.17 -26.69 -0.14 -0.82 16 5 C -0.14 -0.88 6.06 -26.83 -0.16 -1.04 16 6 C 0.10 0.78 6.31 -3.93 -0.02 0.75 16 7 N -0.61 -6.57 2.98 -173.04 -0.52 -7.09 16 8 C 0.52 7.65 7.78 -10.99 -0.09 7.57 16 9 O -0.51 -9.59 15.91 -14.11 -0.22 -9.81 16 10 C 0.05 0.74 4.30 36.00 0.15 0.89 16 11 O -0.33 -6.70 8.99 -47.20 -0.42 -7.12 16 12 C 0.51 11.70 7.90 34.63 0.27 11.97 16 13 O -0.52 -12.31 16.12 -19.23 -0.31 -12.62 16 14 C -0.11 -2.83 5.87 -105.05 -0.62 -3.45 16 15 C -0.19 -4.36 9.62 -38.91 -0.37 -4.74 16 16 C -0.10 -2.33 10.01 -39.72 -0.40 -2.72 16 17 C -0.20 -4.75 9.78 -38.81 -0.38 -5.13 16 18 C 0.09 2.48 5.57 -106.87 -0.60 1.89 16 19 C -0.46 -11.96 9.05 -37.73 -0.34 -12.31 16 20 H 0.08 2.04 7.91 -52.48 -0.41 1.63 16 21 C 0.07 1.82 5.14 -17.35 -0.09 1.73 16 22 N -0.79 -20.57 10.96 55.55 0.61 -19.97 16 23 Si 0.91 18.55 29.60 -169.99 -5.03 13.52 16 24 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 25 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 26 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 27 C -0.09 -2.35 8.24 -38.42 -0.32 -2.67 16 28 C 0.12 1.09 5.72 -3.71 -0.02 1.07 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.66 5.93 -51.93 -0.31 0.35 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.10 1.32 7.68 -51.93 -0.40 0.92 16 39 H 0.10 1.28 7.95 -51.93 -0.41 0.87 16 40 H 0.11 2.32 7.59 -52.49 -0.40 1.92 16 41 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.10 2.18 8.06 -52.48 -0.42 1.75 16 43 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 44 H 0.14 3.82 5.74 -52.49 -0.30 3.52 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.09 1.05 7.01 -51.92 -0.36 0.69 16 LS Contribution 380.11 15.07 5.73 5.73 Total: -1.00 -31.31 380.11 -10.01 -41.32 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.81 Total: 4.60 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -3.03 Total: -8.55 kcal Atomic # 7 Polarization: -27.15 SS G_CDS: 0.09 Total: -27.05 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.96 Total: -29.55 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.31 -10.01 -41.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051535017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.676 kcal (2) G-P(sol) polarization free energy of solvation -31.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds