Wall clock time and date at job start Tue Mar 31 2020 17:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.49846 * 2 1 4 4 C 1.53041 * 109.52598 * 239.92215 * 2 1 3 5 5 C 1.53037 * 109.53737 * 178.66958 * 4 2 1 6 6 C 1.52765 * 109.38844 * 61.23557 * 5 4 2 7 7 N 1.46924 * 109.00715 * 305.59183 * 6 5 4 8 8 C 1.34776 * 120.62628 * 233.58074 * 7 6 5 9 9 O 1.21284 * 119.99434 * 179.71796 * 8 7 6 10 10 C 1.50693 * 120.00411 * 359.72313 * 8 7 6 11 11 O 1.45196 * 109.47469 * 180.02562 * 10 8 7 12 12 C 1.34709 * 117.00207 * 179.97438 * 11 10 8 13 13 O 1.21460 * 119.99692 * 0.02562 * 12 11 10 14 14 C 1.47767 * 119.99808 * 179.97438 * 12 11 10 15 15 C 1.39962 * 120.03417 * 0.02562 * 14 12 11 16 16 C 1.38317 * 120.35689 * 179.97438 * 15 14 12 17 17 C 1.37766 * 120.41329 * 359.97438 * 16 15 14 18 18 C 1.40746 * 120.05463 * 0.02562 * 17 16 15 19 19 C 1.41433 * 120.18002 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99684 * 24.34231 * 19 18 17 21 21 C 1.39928 * 120.00440 * 204.33884 * 19 18 17 22 22 N 1.30828 * 120.00002 * 17.72395 * 21 19 18 23 23 Si 1.86807 * 120.00391 * 197.71822 * 21 19 18 24 24 H 1.48497 * 109.46741 * 94.69019 * 23 21 19 25 25 H 1.48493 * 109.47453 * 214.69511 * 23 21 19 26 26 H 1.48499 * 109.46860 * 334.69497 * 23 21 19 27 27 C 1.39051 * 120.02601 * 179.72367 * 14 12 11 28 28 C 1.46924 * 118.73880 * 53.30378 * 7 6 5 29 29 H 1.08993 * 109.47115 * 299.93425 * 1 2 3 30 30 H 1.08998 * 109.47197 * 59.93756 * 1 2 3 31 31 H 1.08998 * 109.46867 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.45430 * 298.68342 * 4 2 1 33 33 H 1.08997 * 109.45890 * 58.64278 * 4 2 1 34 34 H 1.09003 * 109.49882 * 181.31263 * 5 4 2 35 35 H 1.09004 * 109.49705 * 301.37528 * 5 4 2 36 36 H 1.08997 * 109.51253 * 185.70582 * 6 5 4 37 37 H 1.08996 * 109.42631 * 65.42138 * 6 5 4 38 38 H 1.09002 * 109.47245 * 59.99278 * 10 8 7 39 39 H 1.09006 * 109.46609 * 300.00061 * 10 8 7 40 40 H 1.08002 * 119.82408 * 359.97438 * 15 14 12 41 41 H 1.07999 * 119.79520 * 179.97438 * 16 15 14 42 42 H 1.08003 * 119.96941 * 180.02562 * 17 16 15 43 43 H 0.97000 * 120.00332 * 179.97438 * 22 21 19 44 44 H 1.08001 * 120.20892 * 0.02562 * 27 14 12 45 45 H 1.08999 * 109.58881 * 66.43738 * 28 7 6 46 46 H 1.09007 * 109.58530 * 186.85769 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7229 -1.2482 5 6 3.5715 -0.6941 -1.2653 6 6 4.1063 -1.4203 -0.0323 7 7 3.5047 -0.8281 1.1702 8 6 4.2808 -0.3841 2.1787 9 8 3.7722 0.1075 3.1639 10 6 5.7802 -0.4984 2.0821 11 8 6.3856 0.0450 3.2848 12 6 7.7304 0.0181 3.3585 13 8 8.3795 -0.4462 2.4430 14 6 8.4157 0.5544 4.5528 15 6 7.6683 1.0900 5.6079 16 6 8.3029 1.5934 6.7291 17 6 9.6774 1.5730 6.8207 18 6 10.4460 1.0384 5.7698 19 6 11.8572 1.0156 5.8613 20 1 12.3358 1.0253 6.8295 21 6 12.6333 0.9803 4.6976 22 7 12.1044 1.3131 3.5482 23 14 14.4249 0.4584 4.7850 24 1 14.5331 -0.9918 4.4844 25 1 15.2144 1.2301 3.7920 26 1 14.9511 0.7218 6.1484 27 6 9.8036 0.5216 4.6319 28 6 2.0413 -0.7234 1.2498 29 1 -0.3633 0.5128 0.8905 30 1 -0.3633 0.5148 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6979 -1.7573 -1.2350 33 1 1.6588 -0.2246 -2.1388 34 1 3.9346 -1.1887 -2.1663 35 1 3.9161 0.3399 -1.2540 36 1 5.1902 -1.3142 0.0112 37 1 3.8424 -2.4763 -0.0906 38 1 6.1320 0.0591 1.2140 39 1 6.0587 -1.5471 1.9776 40 1 6.5902 1.1105 5.5464 41 1 7.7173 2.0050 7.5379 42 1 10.1654 1.9675 7.6997 43 1 12.6425 1.2890 2.7415 44 1 10.3844 0.1052 3.8222 45 1 1.6057 -1.7214 1.2982 46 1 1.7632 -0.1576 2.1390 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051535017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:02 Heat of formation + Delta-G solvation = -129.191748 kcal Electronic energy + Delta-G solvation = -27619.538083 eV Core-core repulsion = 23665.645475 eV Total energy + Delta-G solvation = -3953.892608 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.85410 -41.07585 -39.26080 -38.71492 -37.36425 -35.63339 -35.02257 -32.86098 -32.35829 -31.40309 -30.33282 -27.56868 -27.24795 -26.30924 -24.74095 -23.29330 -22.88376 -21.69833 -21.44262 -20.23025 -19.74922 -18.46333 -18.19078 -17.82135 -17.59235 -17.09326 -16.57981 -16.38825 -16.29659 -15.74666 -15.38773 -15.24490 -15.08935 -14.81992 -14.58130 -14.37564 -14.28518 -13.90722 -13.79158 -13.52586 -13.46597 -13.03267 -12.99332 -12.83831 -12.72514 -12.58575 -12.22861 -12.07360 -12.05117 -11.97000 -11.86174 -11.68597 -11.56486 -11.40320 -11.32888 -11.10696 -10.97589 -9.79733 -9.65059 -9.47299 -8.69312 -6.40583 0.07216 0.94294 1.13436 1.29427 1.39001 1.45894 1.53753 1.74390 2.10985 2.19825 2.70384 3.20518 3.60561 3.69620 3.80689 3.82316 3.88052 3.92418 3.95998 4.02723 4.27222 4.37363 4.39991 4.51808 4.60522 4.64126 4.75431 4.78659 4.79568 4.84964 4.90166 5.02738 5.05751 5.09612 5.11877 5.16428 5.24708 5.26868 5.29630 5.41555 5.42428 5.50387 5.78433 5.87399 5.98950 6.10959 6.19987 6.50942 6.70006 6.84686 6.86441 6.90116 8.28635 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.022253 B = 0.002322 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.934864 B =12054.411372 C =13081.241847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 H 0.057 0.943 4 C -0.111 4.111 5 C -0.135 4.135 6 C 0.092 3.908 7 N -0.602 5.602 8 C 0.519 3.481 9 O -0.563 6.563 10 C 0.042 3.958 11 O -0.339 6.339 12 C 0.520 3.480 13 O -0.535 6.535 14 C -0.128 4.128 15 C -0.186 4.186 16 C -0.099 4.099 17 C -0.202 4.202 18 C 0.066 3.934 19 C -0.491 4.491 20 H 0.088 0.912 21 C 0.030 3.970 22 N -0.825 5.825 23 Si 0.986 3.014 24 H -0.265 1.265 25 H -0.269 1.269 26 H -0.251 1.251 27 C -0.118 4.118 28 C 0.113 3.887 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.056 0.944 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.138 0.862 42 H 0.117 0.883 43 H 0.289 0.711 44 H 0.112 0.888 45 H 0.088 0.912 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.976 -6.158 -12.039 22.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 H 0.075 0.925 4 C -0.148 4.148 5 C -0.173 4.173 6 C -0.029 4.029 7 N -0.336 5.336 8 C 0.307 3.693 9 O -0.441 6.441 10 C -0.035 4.035 11 O -0.255 6.255 12 C 0.367 3.633 13 O -0.426 6.426 14 C -0.129 4.129 15 C -0.205 4.205 16 C -0.117 4.117 17 C -0.222 4.222 18 C 0.063 3.937 19 C -0.520 4.520 20 H 0.106 0.894 21 C -0.185 4.185 22 N -0.450 5.450 23 Si 0.806 3.194 24 H -0.190 1.190 25 H -0.194 1.194 26 H -0.175 1.175 27 C -0.138 4.138 28 C -0.008 4.008 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.074 0.926 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.156 0.844 42 H 0.135 0.865 43 H 0.100 0.900 44 H 0.129 0.871 45 H 0.106 0.894 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.039 -6.003 -12.058 22.512 hybrid contribution 0.881 0.008 -0.224 0.909 sum -17.158 -5.995 -12.282 21.936 Atomic orbital electron populations 1.21735 0.92937 1.02899 1.02339 1.21492 0.97101 0.99175 0.94616 0.92486 1.21594 0.94616 1.01573 0.97055 1.21876 0.96683 1.01043 0.97724 1.22090 0.98792 0.98801 0.83214 1.48100 1.07300 1.60364 1.17881 1.20136 0.88252 0.77852 0.83093 1.90719 1.75531 1.45366 1.32534 1.22941 0.90655 1.02472 0.87388 1.86632 1.21593 1.75270 1.42042 1.21679 0.79860 0.74810 0.86927 1.90731 1.66915 1.45031 1.39935 1.19024 0.93515 1.06946 0.93425 1.20916 0.98748 1.06267 0.94574 1.20939 0.94278 0.99071 0.97424 1.21498 0.93989 1.05821 1.00854 1.17920 0.94475 0.89836 0.91422 1.19868 0.91103 1.46415 0.94586 0.89352 1.26879 1.05992 0.91614 0.94022 1.69864 1.40661 1.33638 1.00874 0.85128 0.75489 0.78997 0.79757 1.18993 1.19354 1.17465 1.21478 0.91075 1.00999 1.00242 1.21844 0.77714 1.01913 0.99337 0.92993 0.91308 0.91253 0.90213 0.90408 0.88048 0.92552 0.89314 0.88454 0.86902 0.86440 0.86083 0.84446 0.86469 0.90008 0.87064 0.89360 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.20 71.98 0.66 -0.74 16 2 C -0.10 -1.38 2.87 -10.72 -0.03 -1.41 16 3 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 4 C -0.11 -1.01 5.17 30.62 0.16 -0.85 16 5 C -0.14 -1.38 6.06 30.53 0.19 -1.20 16 6 C 0.09 1.20 6.31 86.22 0.54 1.74 16 7 N -0.60 -12.28 2.98 -819.75 -2.44 -14.72 16 8 C 0.52 15.27 7.78 87.65 0.68 15.95 16 9 O -0.56 -21.60 15.91 15.76 0.25 -21.35 16 10 C 0.04 1.27 4.30 71.23 0.31 1.57 16 11 O -0.34 -13.80 8.99 -49.80 -0.45 -14.25 16 12 C 0.52 24.09 7.90 70.34 0.56 24.65 16 13 O -0.53 -25.98 16.12 19.96 0.32 -25.66 16 14 C -0.13 -6.43 5.87 -20.14 -0.12 -6.55 16 15 C -0.19 -8.47 9.62 22.71 0.22 -8.25 16 16 C -0.10 -4.27 10.01 22.18 0.22 -4.05 16 17 C -0.20 -9.58 9.78 22.77 0.22 -9.36 16 18 C 0.07 3.55 5.57 -21.32 -0.12 3.43 16 19 C -0.49 -26.07 9.05 23.47 0.21 -25.86 16 20 H 0.09 4.41 7.91 -2.91 -0.02 4.39 16 21 C 0.03 1.53 5.14 85.25 0.44 1.97 16 22 N -0.82 -44.46 10.96 21.82 0.24 -44.22 16 23 Si 0.99 38.28 29.60 68.60 2.03 40.31 16 24 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 25 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 26 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 27 C -0.12 -6.53 8.24 23.02 0.19 -6.34 16 28 C 0.11 2.00 5.72 86.36 0.49 2.49 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 36 H 0.09 1.15 5.93 -2.39 -0.01 1.14 16 37 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.11 3.01 7.68 -2.39 -0.02 2.99 16 39 H 0.12 3.01 7.95 -2.38 -0.02 2.99 16 40 H 0.12 5.15 7.59 -2.91 -0.02 5.13 16 41 H 0.14 4.79 8.06 -2.91 -0.02 4.76 16 42 H 0.12 5.02 8.06 -2.91 -0.02 4.99 16 43 H 0.29 14.22 8.30 -92.71 -0.77 13.45 16 44 H 0.11 6.61 5.74 -2.91 -0.02 6.60 16 45 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.07 1.60 7.01 -2.38 -0.02 1.58 16 Total: -1.00 -70.56 380.11 5.76 -64.81 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 0.98 Total: 27.87 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: 4.82 Total: -12.80 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -2.20 Total: -58.94 kcal Atomic # 8 Polarization: -61.37 SS G_CDS: 0.12 Total: -61.25 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal Total: -70.56 5.76 -64.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051535017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.386 kcal (2) G-P(sol) polarization free energy of solvation -70.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds