Wall clock time and date at job start Tue Mar 31 2020 17:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.49216 * 2 1 4 4 C 1.53039 * 109.50059 * 120.06498 * 2 1 3 5 5 C 1.53046 * 109.53626 * 181.35002 * 4 2 1 6 6 C 1.53191 * 109.31488 * 298.63984 * 5 4 2 7 7 N 1.46926 * 108.77812 * 54.63184 * 6 5 4 8 8 C 1.34773 * 120.62781 * 126.36593 * 7 6 5 9 9 O 1.21283 * 119.99863 * 180.02562 * 8 7 6 10 10 C 1.50699 * 120.00091 * 0.02562 * 8 7 6 11 11 O 1.45201 * 109.47111 * 179.97438 * 10 8 7 12 12 C 1.34709 * 117.00099 * 179.97438 * 11 10 8 13 13 O 1.21462 * 119.99565 * 359.97438 * 12 11 10 14 14 C 1.47770 * 119.99931 * 179.97438 * 12 11 10 15 15 C 1.39966 * 120.03142 * 359.97438 * 14 12 11 16 16 C 1.38306 * 120.35481 * 179.97438 * 15 14 12 17 17 C 1.37764 * 120.41793 * 359.97438 * 16 15 14 18 18 C 1.40748 * 120.04962 * 0.02562 * 17 16 15 19 19 C 1.41445 * 120.17553 * 179.97438 * 18 17 16 20 20 H 1.07991 * 119.99937 * 24.45849 * 19 18 17 21 21 C 1.39939 * 119.99936 * 204.45560 * 19 18 17 22 22 N 1.30826 * 119.99903 * 17.89313 * 21 19 18 23 23 Si 1.86795 * 119.99927 * 197.88741 * 21 19 18 24 24 H 1.48503 * 109.47097 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47139 * 120.00177 * 23 21 19 26 26 H 1.48497 * 109.47434 * 240.00178 * 23 21 19 27 27 C 1.39044 * 120.02808 * 179.97438 * 14 12 11 28 28 C 1.46923 * 118.73878 * 306.64780 * 7 6 5 29 29 H 1.08999 * 109.47474 * 299.92632 * 1 2 3 30 30 H 1.08994 * 109.47649 * 59.93831 * 1 2 3 31 31 H 1.09004 * 109.46429 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.45738 * 61.33268 * 4 2 1 33 33 H 1.09002 * 109.46173 * 301.37446 * 4 2 1 34 34 H 1.09002 * 109.49259 * 178.68502 * 5 4 2 35 35 H 1.08998 * 109.49571 * 58.59154 * 5 4 2 36 36 H 1.09004 * 109.58316 * 294.84876 * 6 5 4 37 37 H 1.08996 * 109.70237 * 174.49259 * 6 5 4 38 38 H 1.08995 * 109.47353 * 59.99425 * 10 8 7 39 39 H 1.09001 * 109.47039 * 299.99253 * 10 8 7 40 40 H 1.08003 * 119.82298 * 0.02562 * 15 14 12 41 41 H 1.08003 * 119.79364 * 180.27729 * 16 15 14 42 42 H 1.08001 * 119.97352 * 180.02562 * 17 16 15 43 43 H 0.96999 * 119.99948 * 179.97438 * 22 21 19 44 44 H 1.07997 * 120.20782 * 0.04213 * 27 14 12 45 45 H 1.08996 * 109.58611 * 173.14218 * 28 7 6 46 46 H 1.08997 * 109.58592 * 293.56872 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0409 -0.7227 1.2485 5 6 3.5709 -0.6939 1.2665 6 6 4.1061 -1.4252 0.0314 7 7 3.5053 -0.8281 -1.1691 8 6 4.2819 -0.3841 -2.1772 9 8 3.7739 0.1073 -3.1628 10 6 5.7814 -0.4983 -2.0798 11 8 6.3873 0.0451 -3.2822 12 6 7.7322 0.0192 -3.3548 13 8 8.3809 -0.4442 -2.4384 14 6 8.4181 0.5545 -4.5491 15 6 7.6711 1.0881 -5.6057 16 6 8.3063 1.5915 -6.7264 17 6 9.6809 1.5741 -6.8160 18 6 10.4491 1.0415 -5.7637 19 6 11.8605 1.0218 -5.8531 20 1 12.3712 1.7296 -6.4890 21 6 12.5952 0.0851 -5.1175 22 7 12.0031 -0.9762 -4.6332 23 14 14.4213 0.3502 -4.8270 24 1 14.8466 1.6176 -5.4738 25 1 14.6844 0.4273 -3.3676 26 1 15.1847 -0.7831 -5.4084 27 6 9.8063 0.5285 -4.6244 28 6 2.0423 -0.7184 -1.2470 29 1 -0.3634 0.5127 0.8906 30 1 -0.3634 0.5147 -0.8894 31 1 -0.3632 -1.0277 -0.0005 32 1 1.6973 -1.7571 1.2354 33 1 1.6577 -0.2243 2.1390 34 1 3.9335 -1.1883 2.1677 35 1 3.9154 0.3402 1.2546 36 1 3.8388 -2.4805 0.0873 37 1 5.1904 -1.3248 -0.0141 38 1 6.0599 -1.5469 -1.9749 39 1 6.1326 0.0595 -1.2117 40 1 6.5930 1.1077 -5.5450 41 1 7.7211 2.0052 -7.5344 42 1 10.1694 1.9694 -7.6943 43 1 12.5124 -1.6256 -4.1236 44 1 10.3869 0.1172 -3.8120 45 1 1.7652 -0.1495 -2.1345 46 1 1.6033 -1.7148 -1.2974 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051535019.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:07 Heat of formation + Delta-G solvation = -113.877571 kcal Electronic energy + Delta-G solvation = -27614.112266 eV Core-core repulsion = 23660.883731 eV Total energy + Delta-G solvation = -3953.228536 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.59808 -39.66173 -37.88788 -37.28914 -35.69302 -34.23859 -33.75172 -32.19674 -30.54742 -29.53115 -29.08954 -26.87454 -25.55965 -25.23197 -23.05561 -22.67851 -21.00293 -20.74475 -19.88502 -19.33224 -18.02451 -17.08144 -16.78952 -16.42177 -16.02510 -15.73246 -15.28218 -14.99448 -14.85769 -14.77717 -14.56943 -14.00203 -13.75308 -13.46489 -13.36110 -13.11218 -12.96729 -12.68054 -12.59235 -12.39540 -12.20108 -12.09792 -11.68465 -11.51236 -11.23740 -11.20857 -11.11518 -11.10379 -10.77105 -10.75990 -10.52267 -10.44107 -10.25107 -9.88344 -9.70956 -9.51812 -9.25002 -8.92197 -7.75209 -7.55253 -6.83525 -4.43734 1.94156 2.35826 2.44470 2.77052 3.06305 3.10843 3.13118 3.35658 3.55432 3.89831 4.19301 4.32407 4.42273 4.49875 4.57050 4.58673 4.84501 4.98140 5.07581 5.08819 5.11233 5.20681 5.28885 5.35099 5.39473 5.46971 5.54037 5.57593 5.60238 5.69031 5.74216 5.80262 5.98495 6.14003 6.22283 6.45911 6.58922 6.84755 6.93524 6.97000 7.07637 7.16615 7.31063 7.68859 7.75853 7.90754 7.98606 8.09850 8.43680 8.47401 8.76551 8.78761 10.11985 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.022575 B = 0.002313 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.033600 B =12104.148003 C =13115.071275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 H 0.075 0.925 4 C -0.115 4.115 5 C -0.137 4.137 6 C 0.101 3.899 7 N -0.614 5.614 8 C 0.520 3.480 9 O -0.512 6.512 10 C 0.049 3.951 11 O -0.332 6.332 12 C 0.514 3.486 13 O -0.518 6.518 14 C -0.115 4.115 15 C -0.189 4.189 16 C -0.104 4.104 17 C -0.199 4.199 18 C 0.094 3.906 19 C -0.460 4.460 20 H 0.083 0.917 21 C 0.073 3.927 22 N -0.788 5.788 23 Si 0.910 3.090 24 H -0.259 1.259 25 H -0.271 1.271 26 H -0.274 1.274 27 C -0.088 4.088 28 C 0.118 3.882 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.284 0.716 44 H 0.136 0.864 45 H 0.094 0.906 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.981 -2.085 12.695 21.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 H 0.093 0.907 4 C -0.152 4.152 5 C -0.175 4.175 6 C -0.021 4.021 7 N -0.350 5.350 8 C 0.307 3.693 9 O -0.386 6.386 10 C -0.029 4.029 11 O -0.248 6.248 12 C 0.361 3.639 13 O -0.408 6.408 14 C -0.116 4.116 15 C -0.209 4.209 16 C -0.123 4.123 17 C -0.219 4.219 18 C 0.091 3.909 19 C -0.489 4.489 20 H 0.101 0.899 21 C -0.146 4.146 22 N -0.413 5.413 23 Si 0.735 3.265 24 H -0.183 1.183 25 H -0.196 1.196 26 H -0.199 1.199 27 C -0.108 4.108 28 C -0.004 4.004 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.125 0.875 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.095 0.905 44 H 0.154 0.846 45 H 0.112 0.888 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.013 -2.190 12.545 21.251 hybrid contribution 0.819 -0.207 0.470 0.967 sum -16.194 -2.397 13.015 20.913 Atomic orbital electron populations 1.21757 0.94208 1.02089 1.02199 1.21452 0.96095 1.00351 0.94919 0.90658 1.21593 0.95094 1.00888 0.97638 1.21938 0.96273 1.01682 0.97637 1.21850 0.98677 0.97449 0.84160 1.47991 1.06792 1.61956 1.18306 1.20190 0.88421 0.77905 0.82776 1.90742 1.74954 1.42644 1.30294 1.22550 0.90324 1.01265 0.88772 1.86697 1.23213 1.75216 1.39699 1.22010 0.79045 0.75213 0.87586 1.90757 1.66283 1.44215 1.39540 1.18778 0.93767 1.06849 0.92243 1.20653 0.98108 1.06804 0.95319 1.20531 0.94589 1.00315 0.96832 1.21204 0.93026 1.08938 0.98683 1.17544 0.93578 0.90086 0.89654 1.19588 0.90981 1.14700 1.23609 0.89895 1.25966 1.01473 0.93670 0.93474 1.69789 1.38789 1.06839 1.25844 0.86222 0.81655 0.79566 0.79101 1.18301 1.19591 1.19917 1.21649 0.90400 0.99846 0.98878 1.21573 0.78714 1.00930 0.99191 0.92270 0.92242 0.92443 0.91627 0.91523 0.90309 0.91210 0.90793 0.89410 0.88489 0.88545 0.87513 0.88419 0.88283 0.90512 0.84616 0.88771 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.20 37.16 0.34 -0.49 16 2 C -0.11 -0.79 2.85 -90.72 -0.26 -1.04 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.11 -0.68 5.17 -26.69 -0.14 -0.81 16 5 C -0.14 -0.86 6.08 -26.61 -0.16 -1.02 16 6 C 0.10 0.77 6.34 -3.71 -0.02 0.75 16 7 N -0.61 -6.58 2.98 -173.04 -0.52 -7.09 16 8 C 0.52 7.66 7.78 -10.99 -0.09 7.57 16 9 O -0.51 -9.59 15.92 -14.11 -0.22 -9.81 16 10 C 0.05 0.74 4.30 36.01 0.15 0.89 16 11 O -0.33 -6.70 8.99 -47.20 -0.42 -7.12 16 12 C 0.51 11.70 7.90 34.63 0.27 11.97 16 13 O -0.52 -12.31 16.12 -19.24 -0.31 -12.62 16 14 C -0.12 -2.83 5.87 -105.05 -0.62 -3.45 16 15 C -0.19 -4.36 9.62 -38.91 -0.37 -4.74 16 16 C -0.10 -2.33 10.01 -39.73 -0.40 -2.72 16 17 C -0.20 -4.75 9.78 -38.81 -0.38 -5.13 16 18 C 0.09 2.48 5.57 -106.87 -0.60 1.88 16 19 C -0.46 -11.96 9.05 -37.72 -0.34 -12.30 16 20 H 0.08 2.05 7.91 -52.49 -0.42 1.63 16 21 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 22 N -0.79 -20.56 10.95 55.55 0.61 -19.95 16 23 Si 0.91 18.52 29.60 -169.99 -5.03 13.49 16 24 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 25 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 26 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 27 C -0.09 -2.35 8.24 -38.43 -0.32 -2.67 16 28 C 0.12 1.09 5.69 -3.93 -0.02 1.07 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.65 5.93 -51.93 -0.31 0.35 16 38 H 0.10 1.31 7.93 -51.93 -0.41 0.90 16 39 H 0.10 1.29 7.69 -51.93 -0.40 0.89 16 40 H 0.11 2.32 7.59 -52.48 -0.40 1.92 16 41 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 42 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 43 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 44 H 0.14 3.82 5.73 -52.49 -0.30 3.52 16 45 H 0.09 1.05 7.01 -51.93 -0.36 0.69 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 380.09 15.07 5.73 5.73 Total: -1.00 -31.34 380.09 -10.00 -41.35 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -6.81 Total: 4.56 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -3.03 Total: -8.53 kcal Atomic # 7 Polarization: -27.13 SS G_CDS: 0.09 Total: -27.04 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.96 Total: -29.56 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.34 -10.00 -41.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051535019.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.530 kcal (2) G-P(sol) polarization free energy of solvation -31.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds