Wall clock time and date at job start Tue Mar 31 2020 17:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.49216 * 2 1 4 4 C 1.53039 * 109.50059 * 120.06498 * 2 1 3 5 5 C 1.53046 * 109.53626 * 181.35002 * 4 2 1 6 6 C 1.53191 * 109.31488 * 298.63984 * 5 4 2 7 7 N 1.46926 * 108.77812 * 54.63184 * 6 5 4 8 8 C 1.34773 * 120.62781 * 126.36593 * 7 6 5 9 9 O 1.21283 * 119.99863 * 180.02562 * 8 7 6 10 10 C 1.50699 * 120.00091 * 0.02562 * 8 7 6 11 11 O 1.45201 * 109.47111 * 179.97438 * 10 8 7 12 12 C 1.34709 * 117.00099 * 179.97438 * 11 10 8 13 13 O 1.21462 * 119.99565 * 359.97438 * 12 11 10 14 14 C 1.47770 * 119.99931 * 179.97438 * 12 11 10 15 15 C 1.39966 * 120.03142 * 359.97438 * 14 12 11 16 16 C 1.38306 * 120.35481 * 179.97438 * 15 14 12 17 17 C 1.37764 * 120.41793 * 359.97438 * 16 15 14 18 18 C 1.40748 * 120.04962 * 0.02562 * 17 16 15 19 19 C 1.41445 * 120.17553 * 179.97438 * 18 17 16 20 20 H 1.07991 * 119.99937 * 24.45849 * 19 18 17 21 21 C 1.39939 * 119.99936 * 204.45560 * 19 18 17 22 22 N 1.30826 * 119.99903 * 17.89313 * 21 19 18 23 23 Si 1.86795 * 119.99927 * 197.88741 * 21 19 18 24 24 H 1.48503 * 109.47097 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47139 * 120.00177 * 23 21 19 26 26 H 1.48497 * 109.47434 * 240.00178 * 23 21 19 27 27 C 1.39044 * 120.02808 * 179.97438 * 14 12 11 28 28 C 1.46923 * 118.73878 * 306.64780 * 7 6 5 29 29 H 1.08999 * 109.47474 * 299.92632 * 1 2 3 30 30 H 1.08994 * 109.47649 * 59.93831 * 1 2 3 31 31 H 1.09004 * 109.46429 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.45738 * 61.33268 * 4 2 1 33 33 H 1.09002 * 109.46173 * 301.37446 * 4 2 1 34 34 H 1.09002 * 109.49259 * 178.68502 * 5 4 2 35 35 H 1.08998 * 109.49571 * 58.59154 * 5 4 2 36 36 H 1.09004 * 109.58316 * 294.84876 * 6 5 4 37 37 H 1.08996 * 109.70237 * 174.49259 * 6 5 4 38 38 H 1.08995 * 109.47353 * 59.99425 * 10 8 7 39 39 H 1.09001 * 109.47039 * 299.99253 * 10 8 7 40 40 H 1.08003 * 119.82298 * 0.02562 * 15 14 12 41 41 H 1.08003 * 119.79364 * 180.27729 * 16 15 14 42 42 H 1.08001 * 119.97352 * 180.02562 * 17 16 15 43 43 H 0.96999 * 119.99948 * 179.97438 * 22 21 19 44 44 H 1.07997 * 120.20782 * 0.04213 * 27 14 12 45 45 H 1.08996 * 109.58611 * 173.14218 * 28 7 6 46 46 H 1.08997 * 109.58592 * 293.56872 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0409 -0.7227 1.2485 5 6 3.5709 -0.6939 1.2665 6 6 4.1061 -1.4252 0.0314 7 7 3.5053 -0.8281 -1.1691 8 6 4.2819 -0.3841 -2.1772 9 8 3.7739 0.1073 -3.1628 10 6 5.7814 -0.4983 -2.0798 11 8 6.3873 0.0451 -3.2822 12 6 7.7322 0.0192 -3.3548 13 8 8.3809 -0.4442 -2.4384 14 6 8.4181 0.5545 -4.5491 15 6 7.6711 1.0881 -5.6057 16 6 8.3063 1.5915 -6.7264 17 6 9.6809 1.5741 -6.8160 18 6 10.4491 1.0415 -5.7637 19 6 11.8605 1.0218 -5.8531 20 1 12.3712 1.7296 -6.4890 21 6 12.5952 0.0851 -5.1175 22 7 12.0031 -0.9762 -4.6332 23 14 14.4213 0.3502 -4.8270 24 1 14.8466 1.6176 -5.4738 25 1 14.6844 0.4273 -3.3676 26 1 15.1847 -0.7831 -5.4084 27 6 9.8063 0.5285 -4.6244 28 6 2.0423 -0.7184 -1.2470 29 1 -0.3634 0.5127 0.8906 30 1 -0.3634 0.5147 -0.8894 31 1 -0.3632 -1.0277 -0.0005 32 1 1.6973 -1.7571 1.2354 33 1 1.6577 -0.2243 2.1390 34 1 3.9335 -1.1883 2.1677 35 1 3.9154 0.3402 1.2546 36 1 3.8388 -2.4805 0.0873 37 1 5.1904 -1.3248 -0.0141 38 1 6.0599 -1.5469 -1.9749 39 1 6.1326 0.0595 -1.2117 40 1 6.5930 1.1077 -5.5450 41 1 7.7211 2.0052 -7.5344 42 1 10.1694 1.9694 -7.6943 43 1 12.5124 -1.6256 -4.1236 44 1 10.3869 0.1172 -3.8120 45 1 1.7652 -0.1495 -2.1345 46 1 1.6033 -1.7148 -1.2974 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051535019.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:06 Heat of formation + Delta-G solvation = -129.096881 kcal Electronic energy + Delta-G solvation = -27614.772225 eV Core-core repulsion = 23660.883731 eV Total energy + Delta-G solvation = -3953.888494 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.85462 -41.07745 -39.26206 -38.71685 -37.36417 -35.63473 -35.03125 -32.84339 -32.35791 -31.40375 -30.33265 -27.56999 -27.24794 -26.31186 -24.74346 -23.29421 -22.88341 -21.69990 -21.44339 -20.23140 -19.75116 -18.46498 -18.19172 -17.82357 -17.59195 -17.09365 -16.58046 -16.39069 -16.29240 -15.75102 -15.37895 -15.24354 -15.09152 -14.82275 -14.56671 -14.39472 -14.27822 -13.92236 -13.76317 -13.53200 -13.47524 -13.01676 -13.01000 -12.81842 -12.72521 -12.59938 -12.22422 -12.08013 -12.05334 -11.97031 -11.86481 -11.68599 -11.56719 -11.40513 -11.32604 -11.10151 -10.97643 -9.79867 -9.65105 -9.47238 -8.69546 -6.40439 0.07195 0.94102 1.13383 1.29317 1.39042 1.44741 1.55390 1.74059 2.10848 2.19849 2.70220 3.20511 3.60536 3.69761 3.80748 3.82430 3.87962 3.92604 3.95911 4.02161 4.27248 4.37365 4.39993 4.51756 4.60555 4.64318 4.75514 4.78580 4.79556 4.85151 4.90207 5.02780 5.05850 5.09642 5.11914 5.16416 5.24872 5.26946 5.29571 5.41613 5.42484 5.50375 5.78426 5.87437 5.99045 6.10918 6.19985 6.51023 6.69954 6.84677 6.86397 6.90042 8.28497 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.022575 B = 0.002313 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.033600 B =12104.148003 C =13115.071275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 H 0.057 0.943 4 C -0.111 4.111 5 C -0.134 4.134 6 C 0.092 3.908 7 N -0.602 5.602 8 C 0.519 3.481 9 O -0.563 6.563 10 C 0.042 3.958 11 O -0.339 6.339 12 C 0.520 3.480 13 O -0.535 6.535 14 C -0.128 4.128 15 C -0.186 4.186 16 C -0.099 4.099 17 C -0.202 4.202 18 C 0.066 3.934 19 C -0.491 4.491 20 H 0.088 0.912 21 C 0.030 3.970 22 N -0.824 5.824 23 Si 0.985 3.015 24 H -0.252 1.252 25 H -0.268 1.268 26 H -0.265 1.265 27 C -0.118 4.118 28 C 0.113 3.887 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.138 0.862 42 H 0.117 0.883 43 H 0.289 0.711 44 H 0.112 0.888 45 H 0.069 0.931 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.806 -2.437 13.813 22.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 H 0.076 0.924 4 C -0.149 4.149 5 C -0.172 4.172 6 C -0.030 4.030 7 N -0.336 5.336 8 C 0.307 3.693 9 O -0.441 6.441 10 C -0.035 4.035 11 O -0.255 6.255 12 C 0.367 3.633 13 O -0.426 6.426 14 C -0.129 4.129 15 C -0.205 4.205 16 C -0.117 4.117 17 C -0.222 4.222 18 C 0.063 3.937 19 C -0.520 4.520 20 H 0.106 0.894 21 C -0.185 4.185 22 N -0.450 5.450 23 Si 0.806 3.194 24 H -0.175 1.175 25 H -0.193 1.193 26 H -0.189 1.189 27 C -0.138 4.138 28 C -0.008 4.008 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.076 0.924 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.155 0.845 42 H 0.135 0.865 43 H 0.100 0.900 44 H 0.130 0.870 45 H 0.088 0.912 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.883 -2.556 13.701 22.673 hybrid contribution 0.872 -0.123 0.165 0.896 sum -17.010 -2.679 13.867 22.109 Atomic orbital electron populations 1.21736 0.92927 1.02876 1.02368 1.21412 0.97099 0.99247 0.94602 0.92401 1.21597 0.94654 1.01542 0.97071 1.21943 0.96628 1.01025 0.97628 1.22184 0.98829 0.98678 0.83260 1.48096 1.07299 1.60208 1.18035 1.20137 0.88251 0.77863 0.83083 1.90719 1.75558 1.45424 1.32445 1.22942 0.90649 1.02423 0.87439 1.86634 1.21580 1.75226 1.42096 1.21680 0.79872 0.74841 0.86879 1.90731 1.66967 1.44946 1.39976 1.19024 0.93544 1.06762 0.93586 1.20914 0.98760 1.05821 0.95018 1.20935 0.94282 0.99053 0.97440 1.21496 0.93865 1.08218 0.98597 1.17923 0.94468 0.90890 0.90388 1.19883 0.91401 1.15623 1.25058 0.89361 1.26880 1.06230 0.92836 0.92567 1.69867 1.40803 1.07762 1.26565 0.85106 0.75554 0.79842 0.78932 1.17499 1.19323 1.18934 1.21474 0.91240 1.02197 0.98884 1.21746 0.77754 1.01908 0.99400 0.91261 0.92972 0.91319 0.90302 0.90351 0.88097 0.92401 0.88567 0.89278 0.86687 0.86651 0.86084 0.84450 0.86472 0.90003 0.87045 0.91230 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.20 71.98 0.66 -0.72 16 2 C -0.10 -1.35 2.85 -10.86 -0.03 -1.38 16 3 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 4 C -0.11 -0.99 5.17 30.62 0.16 -0.84 16 5 C -0.13 -1.34 6.08 30.67 0.19 -1.16 16 6 C 0.09 1.20 6.34 86.36 0.55 1.74 16 7 N -0.60 -12.29 2.98 -819.76 -2.44 -14.73 16 8 C 0.52 15.27 7.78 87.66 0.68 15.95 16 9 O -0.56 -21.60 15.92 15.76 0.25 -21.35 16 10 C 0.04 1.27 4.30 71.24 0.31 1.57 16 11 O -0.34 -13.79 8.99 -49.80 -0.45 -14.24 16 12 C 0.52 24.09 7.90 70.34 0.56 24.65 16 13 O -0.53 -25.98 16.12 19.96 0.32 -25.66 16 14 C -0.13 -6.43 5.87 -20.14 -0.12 -6.55 16 15 C -0.19 -8.48 9.62 22.70 0.22 -8.26 16 16 C -0.10 -4.27 10.01 22.17 0.22 -4.05 16 17 C -0.20 -9.59 9.78 22.77 0.22 -9.37 16 18 C 0.07 3.55 5.57 -21.32 -0.12 3.43 16 19 C -0.49 -26.08 9.05 23.47 0.21 -25.87 16 20 H 0.09 4.41 7.91 -2.92 -0.02 4.39 16 21 C 0.03 1.52 5.14 85.25 0.44 1.96 16 22 N -0.82 -44.40 10.95 21.83 0.24 -44.16 16 23 Si 0.99 38.26 29.60 68.60 2.03 40.29 16 24 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 25 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 26 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 27 C -0.12 -6.53 8.24 23.02 0.19 -6.34 16 28 C 0.11 2.00 5.69 86.22 0.49 2.49 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 37 H 0.09 1.15 5.93 -2.39 -0.01 1.14 16 38 H 0.12 3.02 7.93 -2.39 -0.02 3.00 16 39 H 0.12 3.00 7.69 -2.39 -0.02 2.98 16 40 H 0.12 5.15 7.59 -2.91 -0.02 5.13 16 41 H 0.14 4.79 8.06 -2.91 -0.02 4.76 16 42 H 0.12 5.02 8.06 -2.91 -0.02 5.00 16 43 H 0.29 14.17 8.30 -92.71 -0.77 13.40 16 44 H 0.11 6.63 5.73 -2.91 -0.02 6.61 16 45 H 0.07 1.60 7.01 -2.39 -0.02 1.58 16 46 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -70.56 380.09 5.76 -64.80 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 0.98 Total: 27.78 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: 4.82 Total: -12.74 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -2.20 Total: -58.89 kcal Atomic # 8 Polarization: -61.37 SS G_CDS: 0.12 Total: -61.25 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Total: -70.56 5.76 -64.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051535019.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.293 kcal (2) G-P(sol) polarization free energy of solvation -70.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds