Wall clock time and date at job start Tue Mar 31 2020 17:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.59142 * 2 1 4 4 C 1.53195 * 109.58838 * 239.57086 * 2 1 3 5 5 C 1.53040 * 109.31387 * 185.58017 * 4 2 1 6 6 C 1.53038 * 109.53664 * 61.36463 * 5 4 2 7 7 C 1.53621 * 109.24288 * 298.50965 * 6 5 4 8 8 N 1.46922 * 108.54398 * 54.86163 * 7 6 5 9 9 C 1.34773 * 120.63557 * 126.36834 * 8 7 6 10 10 O 1.21276 * 120.00445 * 173.78674 * 9 8 7 11 11 C 1.50702 * 119.99692 * 353.79206 * 9 8 7 12 12 O 1.45198 * 109.47134 * 180.02562 * 11 9 8 13 13 C 1.34705 * 117.00112 * 179.97438 * 12 11 9 14 14 O 1.21469 * 119.99986 * 359.97438 * 13 12 11 15 15 C 1.47774 * 119.99860 * 180.02562 * 13 12 11 16 16 C 1.39965 * 120.03058 * 359.97438 * 15 13 12 17 17 C 1.38315 * 120.34915 * 180.02562 * 16 15 13 18 18 C 1.37756 * 120.42071 * 359.69664 * 17 16 15 19 19 C 1.40753 * 120.05010 * 0.55978 * 18 17 16 20 20 C 1.41434 * 120.17780 * 179.74427 * 19 18 17 21 21 H 1.08007 * 120.00043 * 34.17251 * 20 19 18 22 22 C 1.39939 * 120.00490 * 214.16825 * 20 19 18 23 23 N 1.30829 * 119.99473 * 5.38821 * 22 20 19 24 24 Si 1.86799 * 120.00309 * 185.39161 * 22 20 19 25 25 H 1.48500 * 109.46807 * 264.99999 * 24 22 20 26 26 H 1.48497 * 109.47136 * 24.99856 * 24 22 20 27 27 H 1.48501 * 109.46849 * 145.00056 * 24 22 20 28 28 C 1.39049 * 120.02528 * 180.02562 * 15 13 12 29 29 H 1.09004 * 109.46840 * 305.65807 * 1 2 3 30 30 H 1.09002 * 109.46595 * 65.65601 * 1 2 3 31 31 H 1.08994 * 109.46860 * 185.65769 * 1 2 3 32 32 H 1.09002 * 109.49520 * 305.53150 * 4 2 1 33 33 H 1.08996 * 109.49821 * 65.62408 * 4 2 1 34 34 H 1.09003 * 109.45769 * 181.38075 * 5 4 2 35 35 H 1.08998 * 109.46121 * 301.35527 * 5 4 2 36 36 H 1.09002 * 109.49706 * 58.59008 * 6 5 4 37 37 H 1.09005 * 109.49466 * 178.67918 * 6 5 4 38 38 H 1.09001 * 109.74290 * 295.11930 * 7 6 5 39 39 H 1.09002 * 109.66277 * 174.55448 * 7 6 5 40 40 H 1.08999 * 109.47290 * 59.99416 * 11 9 8 41 41 H 1.09002 * 109.46636 * 299.99732 * 11 9 8 42 42 H 1.07997 * 119.82496 * 0.02562 * 16 15 13 43 43 H 1.08004 * 119.78633 * 179.97438 * 17 16 15 44 44 H 1.07995 * 119.97741 * 180.28241 * 18 17 16 45 45 H 0.97000 * 120.00079 * 179.97438 * 23 22 20 46 46 H 1.07996 * 120.20911 * 359.94727 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0436 -0.7310 -1.2445 5 6 3.5676 -0.8495 -1.1690 6 6 3.9569 -1.6657 0.0656 7 6 3.4656 -0.9403 1.3276 8 7 2.0226 -0.6981 1.1954 9 6 1.1674 -1.1034 2.1550 10 8 -0.0050 -0.7999 2.0902 11 6 1.6681 -1.9338 3.3086 12 8 0.5633 -2.2409 4.1993 13 6 0.8437 -2.9825 5.2884 14 8 1.9799 -3.3625 5.4883 15 6 -0.2313 -3.3345 6.2393 16 6 -1.5409 -2.8974 6.0093 17 6 -2.5520 -3.2226 6.8952 18 6 -2.2836 -3.9853 8.0105 19 6 -0.9718 -4.4295 8.2616 20 6 -0.6922 -5.2082 9.4087 21 1 -1.4266 -5.9087 9.7781 22 6 0.5361 -5.0712 10.0651 23 7 1.3829 -4.1502 9.6827 24 14 0.9666 -6.2034 11.4871 25 1 0.6102 -5.5448 12.7695 26 1 0.2087 -7.4736 11.3556 27 1 2.4232 -6.4917 11.4668 28 6 0.0576 -4.0995 7.3639 29 1 -0.3633 0.5991 0.8350 30 1 -0.3632 0.4236 -0.9363 31 1 -0.3633 -1.0226 0.1013 32 1 1.6030 -1.7270 -1.2891 33 1 1.7661 -0.1696 -2.1366 34 1 3.9378 -1.3476 -2.0651 35 1 4.0062 0.1458 -1.0993 36 1 3.4983 -2.6529 0.0086 37 1 5.0412 -1.7696 0.1059 38 1 3.9877 0.0107 1.4324 39 1 3.6532 -1.5609 2.2038 40 1 2.4305 -1.3769 3.8533 41 1 2.0972 -2.8613 2.9293 42 1 -1.7630 -2.3030 5.1354 43 1 -3.5592 -2.8801 6.7091 44 1 -3.0794 -4.2388 8.6952 45 1 2.2342 -4.0549 10.1379 46 1 1.0666 -4.4390 7.5456 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051536187.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:26 Heat of formation + Delta-G solvation = -96.640002 kcal Electronic energy + Delta-G solvation = -27964.307596 eV Core-core repulsion = 24011.826538 eV Total energy + Delta-G solvation = -3952.481059 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.80416 -39.70194 -37.67325 -37.26723 -35.72179 -33.67528 -33.45242 -32.95281 -30.47529 -29.53300 -28.70473 -27.41939 -25.33457 -24.87140 -23.35282 -22.27414 -21.24743 -20.97247 -19.87573 -19.25639 -17.93358 -16.94119 -16.77492 -16.48195 -15.98425 -15.75007 -15.20764 -14.95053 -14.77296 -14.65811 -14.48822 -14.07842 -13.75798 -13.54517 -13.34556 -13.01298 -12.75193 -12.63620 -12.57340 -12.36582 -12.10397 -11.96826 -11.70816 -11.37317 -11.33809 -11.16767 -11.12907 -11.07433 -10.94612 -10.75255 -10.51736 -10.43009 -10.23025 -9.71569 -9.57800 -9.27468 -9.15036 -8.82995 -7.76382 -7.45451 -6.71893 -4.45535 1.92124 2.35882 2.45789 2.78731 3.08657 3.11282 3.13471 3.34458 3.54141 3.94882 4.24137 4.36198 4.45150 4.54057 4.64018 4.67758 4.89285 4.95097 5.06949 5.09601 5.12872 5.26652 5.33285 5.45544 5.49285 5.51062 5.58981 5.59369 5.65440 5.68573 5.87318 6.05452 6.11039 6.17393 6.40859 6.48991 6.57142 6.83383 6.92533 6.94762 7.12855 7.20923 7.30210 7.66712 7.72472 7.91079 8.03942 8.10302 8.45120 8.46338 8.77557 8.83157 10.24481 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.021725 B = 0.002458 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.518165 B =11387.407382 C =12459.153816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.147 3.853 3 H 0.072 0.928 4 C -0.132 4.132 5 C -0.120 4.120 6 C -0.137 4.137 7 C 0.102 3.898 8 N -0.612 5.612 9 C 0.520 3.480 10 O -0.504 6.504 11 C 0.046 3.954 12 O -0.332 6.332 13 C 0.514 3.486 14 O -0.517 6.517 15 C -0.121 4.121 16 C -0.176 4.176 17 C -0.112 4.112 18 C -0.186 4.186 19 C 0.094 3.906 20 C -0.467 4.467 21 H 0.081 0.919 22 C 0.071 3.929 23 N -0.806 5.806 24 Si 0.915 3.085 25 H -0.271 1.271 26 H -0.262 1.262 27 H -0.276 1.276 28 C -0.074 4.074 29 H 0.081 0.919 30 H 0.044 0.956 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.282 0.718 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.219 6.829 -18.462 20.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.044 3.956 3 H 0.090 0.910 4 C -0.171 4.171 5 C -0.158 4.158 6 C -0.175 4.175 7 C -0.021 4.021 8 N -0.349 5.349 9 C 0.307 3.693 10 O -0.378 6.378 11 C -0.032 4.032 12 O -0.248 6.248 13 C 0.361 3.639 14 O -0.407 6.407 15 C -0.122 4.122 16 C -0.196 4.196 17 C -0.130 4.130 18 C -0.206 4.206 19 C 0.092 3.908 20 C -0.498 4.498 21 H 0.099 0.901 22 C -0.146 4.146 23 N -0.432 5.432 24 Si 0.739 3.261 25 H -0.196 1.196 26 H -0.186 1.186 27 H -0.201 1.201 28 C -0.093 4.093 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.126 0.874 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.093 0.907 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.151 6.981 -18.380 20.601 hybrid contribution 0.700 -0.388 0.615 1.009 sum 6.851 6.593 -17.766 20.150 Atomic orbital electron populations 1.22239 0.92396 1.04054 1.01251 1.21285 0.96007 0.94909 0.83374 0.91043 1.22034 0.95929 1.01617 0.97492 1.21522 0.95773 1.00487 0.97992 1.22010 1.01412 0.99623 0.94454 1.21936 0.80127 1.00935 0.99093 1.48064 1.07156 1.59146 1.20530 1.20137 0.86254 0.80093 0.82809 1.90788 1.16837 1.54675 1.75502 1.22616 0.89719 1.00331 0.90519 1.86684 1.37628 1.66466 1.34043 1.21986 0.88997 0.73982 0.78928 1.90764 1.23069 1.52341 1.74542 1.18821 0.91207 1.06292 0.95878 1.20722 0.91931 1.05785 1.01157 1.20564 0.97283 0.99702 0.95450 1.21349 0.97566 1.02817 0.98889 1.17563 0.90330 0.91045 0.91879 1.19496 1.00476 1.20583 1.09196 0.90127 1.25897 0.95418 0.94745 0.98521 1.69730 1.08082 1.27558 1.37821 0.86189 0.78380 0.80819 0.80662 1.19606 1.18557 1.20122 1.21688 1.01232 0.96541 0.89867 0.90042 0.93682 0.91539 0.91321 0.90676 0.91550 0.91704 0.91185 0.90436 0.90779 0.89395 0.88681 0.88664 0.87375 0.88301 0.88123 0.90720 0.84677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 7.61 37.16 0.28 -1.30 16 2 C 0.15 1.36 3.49 -67.59 -0.24 1.12 16 3 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.13 -0.95 5.37 -26.61 -0.14 -1.09 16 5 C -0.12 -0.71 5.88 -26.69 -0.16 -0.86 16 6 C -0.14 -0.86 6.10 -26.39 -0.16 -1.02 16 7 C 0.10 0.78 6.38 -3.49 -0.02 0.75 16 8 N -0.61 -6.43 2.97 -164.96 -0.49 -6.92 16 9 C 0.52 7.38 7.58 -10.99 -0.08 7.29 16 10 O -0.50 -8.76 12.08 -14.10 -0.17 -8.93 16 11 C 0.05 0.69 4.31 36.01 0.16 0.84 16 12 O -0.33 -6.56 8.99 -47.18 -0.42 -6.99 16 13 C 0.51 11.56 7.90 34.63 0.27 11.83 16 14 O -0.52 -12.24 16.12 -19.24 -0.31 -12.55 16 15 C -0.12 -2.93 5.87 -105.05 -0.62 -3.55 16 16 C -0.18 -3.99 9.62 -38.91 -0.37 -4.37 16 17 C -0.11 -2.45 10.01 -39.73 -0.40 -2.85 16 18 C -0.19 -4.41 9.78 -38.81 -0.38 -4.79 16 19 C 0.09 2.47 5.50 -106.87 -0.59 1.88 16 20 C -0.47 -12.20 9.04 -37.73 -0.34 -12.54 16 21 H 0.08 2.00 7.85 -52.48 -0.41 1.58 16 22 C 0.07 1.78 5.31 -17.34 -0.09 1.69 16 23 N -0.81 -21.30 10.96 55.55 0.61 -20.69 16 24 Si 0.91 18.84 29.56 -169.99 -5.03 13.81 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 26 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 27 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 28 C -0.07 -1.95 8.17 -38.42 -0.31 -2.27 16 29 H 0.08 1.09 6.54 -51.93 -0.34 0.75 16 30 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.87 6.96 -51.93 -0.36 0.51 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.66 5.93 -51.93 -0.31 0.35 16 40 H 0.10 1.28 7.68 -51.93 -0.40 0.88 16 41 H 0.10 1.27 7.94 -51.93 -0.41 0.86 16 42 H 0.11 2.29 7.59 -52.49 -0.40 1.90 16 43 H 0.10 1.85 8.06 -52.48 -0.42 1.42 16 44 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 45 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 46 H 0.14 3.81 6.05 -52.49 -0.32 3.49 16 LS Contribution 374.15 15.07 5.64 5.64 Total: -1.00 -30.67 374.15 -10.10 -40.77 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -6.73 Total: 5.08 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -3.19 Total: -9.23 kcal Atomic # 7 Polarization: -27.73 SS G_CDS: 0.12 Total: -27.61 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.90 Total: -28.47 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.67 -10.10 -40.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051536187.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.869 kcal (2) G-P(sol) polarization free energy of solvation -30.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds