Wall clock time and date at job start Tue Mar 31 2020 17:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.59142 * 2 1 4 4 C 1.53195 * 109.58838 * 239.57086 * 2 1 3 5 5 C 1.53040 * 109.31387 * 185.58017 * 4 2 1 6 6 C 1.53038 * 109.53664 * 61.36463 * 5 4 2 7 7 C 1.53621 * 109.24288 * 298.50965 * 6 5 4 8 8 N 1.46922 * 108.54398 * 54.86163 * 7 6 5 9 9 C 1.34773 * 120.63557 * 126.36834 * 8 7 6 10 10 O 1.21276 * 120.00445 * 173.78674 * 9 8 7 11 11 C 1.50702 * 119.99692 * 353.79206 * 9 8 7 12 12 O 1.45198 * 109.47134 * 180.02562 * 11 9 8 13 13 C 1.34705 * 117.00112 * 179.97438 * 12 11 9 14 14 O 1.21469 * 119.99986 * 359.97438 * 13 12 11 15 15 C 1.47774 * 119.99860 * 180.02562 * 13 12 11 16 16 C 1.39965 * 120.03058 * 359.97438 * 15 13 12 17 17 C 1.38315 * 120.34915 * 180.02562 * 16 15 13 18 18 C 1.37756 * 120.42071 * 359.69664 * 17 16 15 19 19 C 1.40753 * 120.05010 * 0.55978 * 18 17 16 20 20 C 1.41434 * 120.17780 * 179.74427 * 19 18 17 21 21 H 1.08007 * 120.00043 * 34.17251 * 20 19 18 22 22 C 1.39939 * 120.00490 * 214.16825 * 20 19 18 23 23 N 1.30829 * 119.99473 * 5.38821 * 22 20 19 24 24 Si 1.86799 * 120.00309 * 185.39161 * 22 20 19 25 25 H 1.48500 * 109.46807 * 264.99999 * 24 22 20 26 26 H 1.48497 * 109.47136 * 24.99856 * 24 22 20 27 27 H 1.48501 * 109.46849 * 145.00056 * 24 22 20 28 28 C 1.39049 * 120.02528 * 180.02562 * 15 13 12 29 29 H 1.09004 * 109.46840 * 305.65807 * 1 2 3 30 30 H 1.09002 * 109.46595 * 65.65601 * 1 2 3 31 31 H 1.08994 * 109.46860 * 185.65769 * 1 2 3 32 32 H 1.09002 * 109.49520 * 305.53150 * 4 2 1 33 33 H 1.08996 * 109.49821 * 65.62408 * 4 2 1 34 34 H 1.09003 * 109.45769 * 181.38075 * 5 4 2 35 35 H 1.08998 * 109.46121 * 301.35527 * 5 4 2 36 36 H 1.09002 * 109.49706 * 58.59008 * 6 5 4 37 37 H 1.09005 * 109.49466 * 178.67918 * 6 5 4 38 38 H 1.09001 * 109.74290 * 295.11930 * 7 6 5 39 39 H 1.09002 * 109.66277 * 174.55448 * 7 6 5 40 40 H 1.08999 * 109.47290 * 59.99416 * 11 9 8 41 41 H 1.09002 * 109.46636 * 299.99732 * 11 9 8 42 42 H 1.07997 * 119.82496 * 0.02562 * 16 15 13 43 43 H 1.08004 * 119.78633 * 179.97438 * 17 16 15 44 44 H 1.07995 * 119.97741 * 180.28241 * 18 17 16 45 45 H 0.97000 * 120.00079 * 179.97438 * 23 22 20 46 46 H 1.07996 * 120.20911 * 359.94727 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0436 -0.7310 -1.2445 5 6 3.5676 -0.8495 -1.1690 6 6 3.9569 -1.6657 0.0656 7 6 3.4656 -0.9403 1.3276 8 7 2.0226 -0.6981 1.1954 9 6 1.1674 -1.1034 2.1550 10 8 -0.0050 -0.7999 2.0902 11 6 1.6681 -1.9338 3.3086 12 8 0.5633 -2.2409 4.1993 13 6 0.8437 -2.9825 5.2884 14 8 1.9799 -3.3625 5.4883 15 6 -0.2313 -3.3345 6.2393 16 6 -1.5409 -2.8974 6.0093 17 6 -2.5520 -3.2226 6.8952 18 6 -2.2836 -3.9853 8.0105 19 6 -0.9718 -4.4295 8.2616 20 6 -0.6922 -5.2082 9.4087 21 1 -1.4266 -5.9087 9.7781 22 6 0.5361 -5.0712 10.0651 23 7 1.3829 -4.1502 9.6827 24 14 0.9666 -6.2034 11.4871 25 1 0.6102 -5.5448 12.7695 26 1 0.2087 -7.4736 11.3556 27 1 2.4232 -6.4917 11.4668 28 6 0.0576 -4.0995 7.3639 29 1 -0.3633 0.5991 0.8350 30 1 -0.3632 0.4236 -0.9363 31 1 -0.3633 -1.0226 0.1013 32 1 1.6030 -1.7270 -1.2891 33 1 1.7661 -0.1696 -2.1366 34 1 3.9378 -1.3476 -2.0651 35 1 4.0062 0.1458 -1.0993 36 1 3.4983 -2.6529 0.0086 37 1 5.0412 -1.7696 0.1059 38 1 3.9877 0.0107 1.4324 39 1 3.6532 -1.5609 2.2038 40 1 2.4305 -1.3769 3.8533 41 1 2.0972 -2.8613 2.9293 42 1 -1.7630 -2.3030 5.1354 43 1 -3.5592 -2.8801 6.7091 44 1 -3.0794 -4.2388 8.6952 45 1 2.2342 -4.0549 10.1379 46 1 1.0666 -4.4390 7.5456 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051536187.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:25 Heat of formation + Delta-G solvation = -111.409426 kcal Electronic energy + Delta-G solvation = -27964.948047 eV Core-core repulsion = 24011.826538 eV Total energy + Delta-G solvation = -3953.121509 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.94201 -41.21070 -39.25475 -38.45990 -37.35816 -35.55115 -34.30364 -33.66846 -32.29789 -31.41212 -29.85397 -28.28936 -27.23988 -25.63723 -24.94225 -23.18290 -22.85524 -21.95701 -21.59037 -20.20580 -19.66598 -18.33462 -18.13963 -17.82262 -17.41977 -17.11339 -16.61867 -16.47378 -16.23614 -15.40054 -15.32956 -15.21103 -15.07850 -14.88671 -14.62588 -14.37122 -14.36213 -13.88845 -13.73259 -13.54353 -13.35824 -13.22617 -12.94921 -12.81650 -12.70119 -12.59191 -12.24260 -12.08516 -12.07327 -11.95517 -11.93398 -11.62244 -11.55563 -11.52061 -11.39813 -11.12128 -10.24165 -9.67979 -9.64218 -9.37293 -8.59394 -6.43519 0.06257 0.94519 1.15579 1.35397 1.39864 1.44720 1.54608 1.73432 2.12248 2.22688 2.76329 3.24747 3.56585 3.72319 3.82783 3.84940 3.90792 3.95913 3.98193 4.04615 4.26530 4.31471 4.38717 4.48487 4.57608 4.63679 4.72651 4.77117 4.80828 4.92373 5.01463 5.03639 5.05933 5.07192 5.11731 5.17178 5.22566 5.29766 5.33553 5.42055 5.44573 5.63379 5.77899 5.84247 6.00709 6.18811 6.20435 6.51701 6.70753 6.86754 6.89325 6.99602 8.38826 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.021725 B = 0.002458 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.518165 B =11387.407382 C =12459.153816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.142 3.858 3 H 0.090 0.910 4 C -0.127 4.127 5 C -0.117 4.117 6 C -0.134 4.134 7 C 0.093 3.907 8 N -0.602 5.602 9 C 0.519 3.481 10 O -0.545 6.545 11 C 0.039 3.961 12 O -0.337 6.337 13 C 0.519 3.481 14 O -0.536 6.536 15 C -0.133 4.133 16 C -0.170 4.170 17 C -0.106 4.106 18 C -0.188 4.188 19 C 0.064 3.936 20 C -0.498 4.498 21 H 0.086 0.914 22 C 0.026 3.974 23 N -0.843 5.843 24 Si 0.989 3.011 25 H -0.262 1.262 26 H -0.255 1.255 27 H -0.273 1.273 28 C -0.102 4.102 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.039 0.961 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.125 0.875 43 H 0.140 0.860 44 H 0.119 0.881 45 H 0.285 0.715 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.725 7.475 -19.768 22.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.040 3.960 3 H 0.107 0.893 4 C -0.165 4.165 5 C -0.155 4.155 6 C -0.172 4.172 7 C -0.029 4.029 8 N -0.337 5.337 9 C 0.306 3.694 10 O -0.423 6.423 11 C -0.038 4.038 12 O -0.253 6.253 13 C 0.367 3.633 14 O -0.427 6.427 15 C -0.135 4.135 16 C -0.189 4.189 17 C -0.124 4.124 18 C -0.207 4.207 19 C 0.062 3.938 20 C -0.528 4.528 21 H 0.104 0.896 22 C -0.187 4.187 23 N -0.471 5.471 24 Si 0.809 3.191 25 H -0.187 1.187 26 H -0.178 1.178 27 H -0.197 1.197 28 C -0.122 4.122 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.143 0.857 43 H 0.158 0.842 44 H 0.137 0.863 45 H 0.096 0.904 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.676 7.645 -19.736 22.193 hybrid contribution 0.514 -0.473 0.830 1.084 sum 7.190 7.172 -18.907 21.462 Atomic orbital electron populations 1.22089 0.94018 1.01974 1.01235 1.21491 0.94776 0.96070 0.83652 0.89251 1.22002 0.96956 1.00730 0.96835 1.21531 0.94524 1.01257 0.98152 1.22013 1.02496 0.98843 0.93881 1.22242 0.78259 1.02322 1.00037 1.48161 1.08053 1.57734 1.19767 1.20051 0.86124 0.80080 0.83179 1.90788 1.18450 1.56478 1.76536 1.23002 0.88778 1.01660 0.90333 1.86620 1.39658 1.65454 1.33599 1.21676 0.88225 0.74043 0.79397 1.90738 1.23621 1.53191 1.75192 1.19053 0.92687 1.05915 0.95815 1.21002 0.91352 1.04940 1.01604 1.20979 0.98994 0.98262 0.94133 1.21638 0.96951 1.02420 0.99724 1.17934 0.91570 0.91969 0.92284 1.19797 1.01614 1.21535 1.09891 0.89584 1.26821 0.94873 0.95892 1.01082 1.69838 1.08614 1.29251 1.39364 0.85086 0.78095 0.78740 0.77140 1.18686 1.17808 1.19736 1.21480 1.00308 0.98900 0.91539 0.92709 0.91431 0.94142 0.92758 0.88849 0.90348 0.90399 0.92381 0.88438 0.88695 0.89478 0.87116 0.87114 0.85724 0.84187 0.86251 0.90421 0.87433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 7.61 71.98 0.55 -2.45 16 2 C 0.14 2.39 3.49 44.97 0.16 2.55 16 3 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 4 C -0.13 -1.52 5.37 30.67 0.16 -1.36 16 5 C -0.12 -1.00 5.88 30.62 0.18 -0.82 16 6 C -0.13 -1.35 6.10 30.82 0.19 -1.16 16 7 C 0.09 1.21 6.38 86.51 0.55 1.76 16 8 N -0.60 -11.93 2.97 -794.19 -2.36 -14.29 16 9 C 0.52 14.68 7.58 87.66 0.66 15.35 16 10 O -0.54 -19.39 12.08 15.78 0.19 -19.20 16 11 C 0.04 1.16 4.31 71.24 0.31 1.47 16 12 O -0.34 -13.48 8.99 -49.76 -0.45 -13.93 16 13 C 0.52 23.90 7.90 70.34 0.56 24.45 16 14 O -0.54 -26.11 16.12 19.94 0.32 -25.79 16 15 C -0.13 -6.64 5.87 -20.14 -0.12 -6.75 16 16 C -0.17 -7.57 9.62 22.71 0.22 -7.35 16 17 C -0.11 -4.46 10.01 22.17 0.22 -4.24 16 18 C -0.19 -8.80 9.78 22.77 0.22 -8.58 16 19 C 0.06 3.48 5.50 -21.32 -0.12 3.36 16 20 C -0.50 -26.66 9.04 23.47 0.21 -26.44 16 21 H 0.09 4.33 7.85 -2.91 -0.02 4.30 16 22 C 0.03 1.33 5.31 85.25 0.45 1.78 16 23 N -0.84 -46.26 10.96 21.83 0.24 -46.02 16 24 Si 0.99 39.07 29.56 68.60 2.03 41.10 16 25 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 26 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 27 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 28 C -0.10 -5.65 8.17 23.02 0.19 -5.46 16 29 H 0.05 1.50 6.54 -2.38 -0.02 1.48 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.04 1.09 6.96 -2.39 -0.02 1.07 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.09 1.16 5.93 -2.39 -0.01 1.15 16 40 H 0.11 2.92 7.68 -2.39 -0.02 2.91 16 41 H 0.11 2.92 7.94 -2.39 -0.02 2.90 16 42 H 0.12 5.13 7.59 -2.91 -0.02 5.11 16 43 H 0.14 4.73 8.06 -2.91 -0.02 4.70 16 44 H 0.12 5.04 8.06 -2.91 -0.02 5.02 16 45 H 0.29 14.38 8.30 -92.71 -0.77 13.61 16 46 H 0.11 6.45 6.05 -2.91 -0.02 6.44 16 Total: -1.00 -69.64 374.15 5.56 -64.08 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: 0.98 Total: 27.93 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: 4.60 Total: -13.88 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: -2.12 Total: -60.30 kcal Atomic # 8 Polarization: -58.98 SS G_CDS: 0.06 Total: -58.92 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -69.64 5.56 -64.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051536187.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.331 kcal (2) G-P(sol) polarization free energy of solvation -69.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds