Wall clock time and date at job start Tue Mar 31 2020 17:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.70897 * 2 1 4 4 C 1.52882 * 109.61496 * 239.70433 * 2 1 3 5 5 O 1.42960 * 109.29466 * 188.11469 * 4 2 1 6 6 C 1.42969 * 114.16499 * 62.44928 * 5 4 2 7 7 C 1.53291 * 109.22263 * 297.41243 * 6 5 4 8 8 H 1.08996 * 109.71885 * 292.56549 * 7 6 5 9 9 C 1.52995 * 109.68139 * 172.02552 * 7 6 5 10 10 N 1.47150 * 109.68213 * 120.54076 * 2 1 3 11 11 C 1.34772 * 120.97886 * 350.28329 * 10 2 1 12 12 O 1.21727 * 119.99823 * 205.82071 * 11 10 2 13 13 C 1.46250 * 120.00562 * 25.81750 * 11 10 2 14 14 C 1.35021 * 120.00329 * 186.98353 * 13 11 10 15 15 C 1.46962 * 120.00162 * 179.97438 * 14 13 11 16 16 C 1.40018 * 120.09951 * 359.72918 * 15 14 13 17 17 C 1.37599 * 119.89583 * 179.74106 * 16 15 14 18 18 C 1.39180 * 120.10190 * 0.53512 * 17 16 15 19 19 O 1.35571 * 119.89823 * 179.76094 * 18 17 16 20 20 C 1.34785 * 116.99871 * 185.38414 * 19 18 17 21 21 H 1.08003 * 119.99850 * 4.90668 * 20 19 18 22 22 C 1.38712 * 120.00072 * 184.90659 * 20 19 18 23 23 N 1.31506 * 119.99841 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00131 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46922 * 59.99890 * 24 22 20 26 26 H 1.48498 * 109.47219 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47387 * 299.99832 * 24 22 20 28 28 C 1.39177 * 120.20070 * 359.73888 * 18 17 16 29 29 C 1.37600 * 120.10273 * 359.97438 * 28 18 17 30 30 H 1.09004 * 109.47266 * 273.49703 * 1 2 3 31 31 H 1.09001 * 109.46658 * 33.49087 * 1 2 3 32 32 H 1.09000 * 109.47164 * 153.49205 * 1 2 3 33 33 H 1.08999 * 109.58343 * 68.10349 * 4 2 1 34 34 H 1.09004 * 109.40787 * 308.02130 * 4 2 1 35 35 H 1.09001 * 109.50856 * 177.49543 * 6 5 4 36 36 H 1.08998 * 109.55278 * 57.37001 * 6 5 4 37 37 H 1.09006 * 109.47314 * 291.69809 * 9 7 6 38 38 H 1.09001 * 109.47005 * 51.70293 * 9 7 6 39 39 H 1.09005 * 109.47552 * 171.70120 * 9 7 6 40 40 H 1.08001 * 119.99821 * 6.99406 * 13 11 10 41 41 H 1.08001 * 120.00224 * 359.73092 * 14 13 11 42 42 H 1.07999 * 120.05192 * 359.97438 * 16 15 14 43 43 H 1.08000 * 119.95143 * 180.27308 * 17 16 15 44 44 H 0.97007 * 120.00060 * 180.02562 * 23 22 20 45 45 H 1.08002 * 119.94733 * 180.02562 * 28 18 17 46 46 H 1.07999 * 120.05007 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0433 -0.7265 -1.2434 5 8 3.4601 -0.8892 -1.1444 6 6 3.8811 -1.6923 -0.0390 7 6 3.4630 -1.0102 1.2686 8 1 4.0285 -0.0876 1.3993 9 6 3.7289 -1.9488 2.4472 10 7 2.0256 -0.7041 1.1933 11 6 1.1869 -1.0629 2.1853 12 8 1.6085 -1.1998 3.3190 13 6 -0.2297 -1.2878 1.8999 14 6 -1.0957 -1.5085 2.9120 15 6 -2.5193 -1.7339 2.6252 16 6 -2.9809 -1.7148 1.3034 17 6 -4.3137 -1.9317 1.0392 18 6 -5.2045 -2.1588 2.0842 19 8 -6.5177 -2.3672 1.8195 20 6 -7.3464 -2.4699 2.8776 21 1 -6.9693 -2.3074 3.8765 22 6 -8.6834 -2.7843 2.6835 23 7 -9.1423 -2.9827 1.4671 24 14 -9.8317 -2.9273 4.1499 25 1 -9.8694 -1.6331 4.8771 26 1 -11.1975 -3.2691 3.6776 27 1 -9.3413 -3.9927 5.0606 28 6 -4.7512 -2.1731 3.4000 29 6 -3.4191 -1.9630 3.6733 30 1 -0.3634 0.0627 1.0258 31 1 -0.3633 0.8571 -0.5671 32 1 -0.3633 -0.9196 -0.4587 33 1 1.8052 -0.1422 -2.1323 34 1 1.5683 -1.7051 -1.3130 35 1 4.9653 -1.8028 -0.0614 36 1 3.4136 -2.6748 -0.1030 37 1 3.0474 -2.7980 2.3963 38 1 4.7579 -2.3054 2.4027 39 1 3.5707 -1.4116 3.3824 40 1 -0.5831 -1.2776 0.8794 41 1 -0.7415 -1.5232 3.9322 42 1 -2.2912 -1.5338 0.4923 43 1 -4.6700 -1.9214 0.0197 44 1 -10.0774 -3.2022 1.3313 45 1 -5.4460 -2.3501 4.2077 46 1 -3.0682 -1.9747 4.6946 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131270814.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:59 Heat of formation + Delta-G solvation = 0.421584 kcal Electronic energy + Delta-G solvation = -27952.233529 eV Core-core repulsion = 24003.961377 eV Total energy + Delta-G solvation = -3948.272152 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.07115 -39.22319 -38.46876 -36.99950 -35.67217 -34.70634 -32.93577 -32.25035 -30.47348 -29.76675 -28.82683 -27.17450 -26.33327 -25.50686 -23.55054 -22.47063 -21.99327 -21.61097 -19.81883 -19.30017 -18.11392 -17.22485 -16.93846 -16.80701 -16.24544 -15.73327 -15.49874 -14.88635 -14.82235 -14.74497 -14.47815 -14.25287 -13.84752 -13.65239 -13.51262 -13.46154 -13.15017 -12.89403 -12.52705 -12.31530 -12.16465 -12.12811 -11.83684 -11.78395 -11.72947 -11.40058 -11.18431 -11.12274 -11.05065 -10.80730 -10.58412 -10.51742 -10.21780 -9.54365 -9.38113 -9.32424 -8.81982 -8.58503 -8.40422 -7.07034 -6.66625 -4.21316 1.02378 2.10919 2.48661 2.74904 3.03017 3.03816 3.06876 3.40795 3.45948 3.80935 4.30177 4.47685 4.49537 4.59061 4.71412 4.73604 4.84822 4.93168 4.98904 5.04262 5.10302 5.12984 5.24338 5.29140 5.38934 5.42420 5.49758 5.53695 5.62378 5.63248 5.69655 5.86560 5.97878 6.00980 6.07199 6.14475 6.39289 6.45110 6.55529 6.59440 6.73751 6.77626 6.90164 7.10665 7.21915 7.25192 7.38918 7.62046 7.78450 8.21975 8.78114 9.45044 10.49945 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.027553 B = 0.002187 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.976547 B =12798.008207 C =13539.487293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.114 3.886 3 H 0.082 0.918 4 C 0.048 3.952 5 O -0.381 6.381 6 C 0.051 3.949 7 C 0.116 3.884 8 H 0.076 0.924 9 C -0.153 4.153 10 N -0.628 5.628 11 C 0.567 3.433 12 O -0.541 6.541 13 C -0.319 4.319 14 C 0.019 3.981 15 C -0.193 4.193 16 C -0.047 4.047 17 C -0.198 4.198 18 C 0.165 3.835 19 O -0.162 6.162 20 C -0.393 4.393 21 H 0.096 0.904 22 C 0.042 3.958 23 N -0.852 5.852 24 Si 0.944 3.056 25 H -0.268 1.268 26 H -0.276 1.276 27 H -0.268 1.268 28 C -0.241 4.241 29 C -0.037 4.037 30 H 0.123 0.877 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.059 0.941 35 H 0.104 0.896 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.090 0.910 40 H 0.168 0.832 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.275 0.725 45 H 0.131 0.869 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.099 3.907 -3.207 20.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.011 3.989 3 H 0.100 0.900 4 C -0.029 4.029 5 O -0.299 6.299 6 C -0.027 4.027 7 C 0.013 3.987 8 H 0.094 0.906 9 C -0.210 4.210 10 N -0.366 5.366 11 C 0.361 3.639 12 O -0.420 6.420 13 C -0.338 4.338 14 C -0.001 4.001 15 C -0.194 4.194 16 C -0.065 4.065 17 C -0.218 4.218 18 C 0.109 3.891 19 O -0.063 6.063 20 C -0.469 4.469 21 H 0.114 0.886 22 C -0.164 4.164 23 N -0.485 5.485 24 Si 0.768 3.232 25 H -0.192 1.192 26 H -0.201 1.201 27 H -0.193 1.193 28 C -0.260 4.260 29 C -0.055 4.055 30 H 0.141 0.859 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.124 0.876 34 H 0.077 0.923 35 H 0.122 0.878 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.109 0.891 40 H 0.185 0.815 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.138 0.862 44 H 0.085 0.915 45 H 0.148 0.852 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 20.047 3.823 -3.074 20.639 hybrid contribution -0.739 -0.167 0.792 1.096 sum 19.308 3.656 -2.282 19.783 Atomic orbital electron populations 1.23758 0.93515 1.02332 1.06423 1.21741 0.95596 0.96363 0.85245 0.89968 1.23109 0.81623 1.00443 0.97741 1.87951 1.22086 1.71805 1.48017 1.23104 1.00710 0.93648 0.85189 1.21797 0.81470 0.99215 0.96261 0.90605 1.22102 1.00626 0.99430 0.98824 1.48056 1.07346 1.60896 1.20268 1.18353 0.86874 0.75188 0.83488 1.90731 1.78250 1.51950 1.21082 1.24244 0.92606 1.13577 1.03398 1.22271 0.91686 0.87332 0.98763 1.18441 0.92166 1.15258 0.93563 1.20836 0.94225 0.96298 0.95148 1.20131 0.92430 1.11169 0.98034 1.19611 0.85190 0.91450 0.92869 1.83917 1.12254 1.74838 1.35289 1.21416 0.89282 1.49566 0.86594 0.88635 1.25386 0.96735 0.95836 0.98482 1.70002 1.16112 1.41784 1.20569 0.85722 0.78632 0.79382 0.79455 1.19243 1.20075 1.19252 1.21108 0.96203 1.11745 0.96928 1.20981 0.92507 0.94493 0.97538 0.85945 0.91189 0.90599 0.87612 0.92286 0.87795 0.92488 0.92299 0.92447 0.89139 0.81517 0.86396 0.86715 0.86154 0.91533 0.85159 0.86894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.76 7.45 37.16 0.28 -1.49 16 2 C 0.11 1.04 3.67 -67.63 -0.25 0.79 16 3 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 4 C 0.05 0.40 6.20 37.10 0.23 0.63 16 5 O -0.38 -3.73 10.74 -35.23 -0.38 -4.10 16 6 C 0.05 0.44 6.28 37.31 0.23 0.67 16 7 C 0.12 1.17 3.66 -67.43 -0.25 0.92 16 8 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 9 C -0.15 -1.60 7.76 37.15 0.29 -1.31 16 10 N -0.63 -7.16 3.03 -159.19 -0.48 -7.65 16 11 C 0.57 7.89 6.55 -13.04 -0.09 7.80 16 12 O -0.54 -8.94 13.13 5.17 0.07 -8.87 16 13 C -0.32 -4.22 6.22 -37.51 -0.23 -4.45 16 14 C 0.02 0.28 9.45 -37.19 -0.35 -0.07 16 15 C -0.19 -3.20 5.87 -105.03 -0.62 -3.82 16 16 C -0.05 -0.77 9.40 -39.15 -0.37 -1.14 16 17 C -0.20 -3.85 9.97 -39.46 -0.39 -4.25 16 18 C 0.17 3.73 6.66 -38.88 -0.26 3.47 16 19 O -0.16 -4.34 9.74 0.73 0.01 -4.34 16 20 C -0.39 -10.34 9.44 30.91 0.29 -10.05 16 21 H 0.10 2.31 5.26 -52.48 -0.28 2.03 16 22 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 23 N -0.85 -23.66 13.67 55.48 0.76 -22.90 16 24 Si 0.94 19.37 29.55 -169.99 -5.02 14.34 16 25 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 26 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 27 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 28 C -0.24 -4.91 9.11 -39.47 -0.36 -5.27 16 29 C -0.04 -0.65 9.78 -39.14 -0.38 -1.03 16 30 H 0.12 1.32 3.95 -97.00 -0.38 0.94 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.60 6.17 -51.93 -0.32 0.28 16 33 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.48 7.93 -51.93 -0.41 0.07 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.70 7.45 -51.93 -0.39 0.32 16 38 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 39 H 0.09 1.15 6.39 -51.93 -0.33 0.82 16 40 H 0.17 1.91 1.62 -86.49 -0.14 1.77 16 41 H 0.12 1.77 7.54 -52.49 -0.40 1.37 16 42 H 0.12 1.50 5.81 -52.49 -0.31 1.19 16 43 H 0.12 2.22 8.06 -52.49 -0.42 1.79 16 44 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.13 2.64 5.68 -52.49 -0.30 2.34 16 46 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 363.36 15.07 5.48 5.48 Total: -1.00 -30.40 363.36 -8.08 -38.48 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -6.19 Total: 7.14 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -2.32 Total: -17.58 kcal Atomic # 7 Polarization: -30.83 SS G_CDS: 0.28 Total: -30.55 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.30 Total: -17.32 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.40 -8.08 -38.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131270814.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.906 kcal (2) G-P(sol) polarization free energy of solvation -30.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds