Wall clock time and date at job start Tue Mar 31 2020 17:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.70897 * 2 1 4 4 C 1.52882 * 109.61496 * 239.70433 * 2 1 3 5 5 O 1.42960 * 109.29466 * 188.11469 * 4 2 1 6 6 C 1.42969 * 114.16499 * 62.44928 * 5 4 2 7 7 C 1.53291 * 109.22263 * 297.41243 * 6 5 4 8 8 H 1.08996 * 109.71885 * 292.56549 * 7 6 5 9 9 C 1.52995 * 109.68139 * 172.02552 * 7 6 5 10 10 N 1.47150 * 109.68213 * 120.54076 * 2 1 3 11 11 C 1.34772 * 120.97886 * 350.28329 * 10 2 1 12 12 O 1.21727 * 119.99823 * 205.82071 * 11 10 2 13 13 C 1.46250 * 120.00562 * 25.81750 * 11 10 2 14 14 C 1.35021 * 120.00329 * 186.98353 * 13 11 10 15 15 C 1.46962 * 120.00162 * 179.97438 * 14 13 11 16 16 C 1.40018 * 120.09951 * 359.72918 * 15 14 13 17 17 C 1.37599 * 119.89583 * 179.74106 * 16 15 14 18 18 C 1.39180 * 120.10190 * 0.53512 * 17 16 15 19 19 O 1.35571 * 119.89823 * 179.76094 * 18 17 16 20 20 C 1.34785 * 116.99871 * 185.38414 * 19 18 17 21 21 H 1.08003 * 119.99850 * 4.90668 * 20 19 18 22 22 C 1.38712 * 120.00072 * 184.90659 * 20 19 18 23 23 N 1.31506 * 119.99841 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00131 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46922 * 59.99890 * 24 22 20 26 26 H 1.48498 * 109.47219 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47387 * 299.99832 * 24 22 20 28 28 C 1.39177 * 120.20070 * 359.73888 * 18 17 16 29 29 C 1.37600 * 120.10273 * 359.97438 * 28 18 17 30 30 H 1.09004 * 109.47266 * 273.49703 * 1 2 3 31 31 H 1.09001 * 109.46658 * 33.49087 * 1 2 3 32 32 H 1.09000 * 109.47164 * 153.49205 * 1 2 3 33 33 H 1.08999 * 109.58343 * 68.10349 * 4 2 1 34 34 H 1.09004 * 109.40787 * 308.02130 * 4 2 1 35 35 H 1.09001 * 109.50856 * 177.49543 * 6 5 4 36 36 H 1.08998 * 109.55278 * 57.37001 * 6 5 4 37 37 H 1.09006 * 109.47314 * 291.69809 * 9 7 6 38 38 H 1.09001 * 109.47005 * 51.70293 * 9 7 6 39 39 H 1.09005 * 109.47552 * 171.70120 * 9 7 6 40 40 H 1.08001 * 119.99821 * 6.99406 * 13 11 10 41 41 H 1.08001 * 120.00224 * 359.73092 * 14 13 11 42 42 H 1.07999 * 120.05192 * 359.97438 * 16 15 14 43 43 H 1.08000 * 119.95143 * 180.27308 * 17 16 15 44 44 H 0.97007 * 120.00060 * 180.02562 * 23 22 20 45 45 H 1.08002 * 119.94733 * 180.02562 * 28 18 17 46 46 H 1.07999 * 120.05007 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0433 -0.7265 -1.2434 5 8 3.4601 -0.8892 -1.1444 6 6 3.8811 -1.6923 -0.0390 7 6 3.4630 -1.0102 1.2686 8 1 4.0285 -0.0876 1.3993 9 6 3.7289 -1.9488 2.4472 10 7 2.0256 -0.7041 1.1933 11 6 1.1869 -1.0629 2.1853 12 8 1.6085 -1.1998 3.3190 13 6 -0.2297 -1.2878 1.8999 14 6 -1.0957 -1.5085 2.9120 15 6 -2.5193 -1.7339 2.6252 16 6 -2.9809 -1.7148 1.3034 17 6 -4.3137 -1.9317 1.0392 18 6 -5.2045 -2.1588 2.0842 19 8 -6.5177 -2.3672 1.8195 20 6 -7.3464 -2.4699 2.8776 21 1 -6.9693 -2.3074 3.8765 22 6 -8.6834 -2.7843 2.6835 23 7 -9.1423 -2.9827 1.4671 24 14 -9.8317 -2.9273 4.1499 25 1 -9.8694 -1.6331 4.8771 26 1 -11.1975 -3.2691 3.6776 27 1 -9.3413 -3.9927 5.0606 28 6 -4.7512 -2.1731 3.4000 29 6 -3.4191 -1.9630 3.6733 30 1 -0.3634 0.0627 1.0258 31 1 -0.3633 0.8571 -0.5671 32 1 -0.3633 -0.9196 -0.4587 33 1 1.8052 -0.1422 -2.1323 34 1 1.5683 -1.7051 -1.3130 35 1 4.9653 -1.8028 -0.0614 36 1 3.4136 -2.6748 -0.1030 37 1 3.0474 -2.7980 2.3963 38 1 4.7579 -2.3054 2.4027 39 1 3.5707 -1.4116 3.3824 40 1 -0.5831 -1.2776 0.8794 41 1 -0.7415 -1.5232 3.9322 42 1 -2.2912 -1.5338 0.4923 43 1 -4.6700 -1.9214 0.0197 44 1 -10.0774 -3.2022 1.3313 45 1 -5.4460 -2.3501 4.2077 46 1 -3.0682 -1.9747 4.6946 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131270814.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:58 Heat of formation + Delta-G solvation = -18.149933 kcal Electronic energy + Delta-G solvation = -27953.038851 eV Core-core repulsion = 24003.961377 eV Total energy + Delta-G solvation = -3949.077474 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.01494 -40.80563 -39.41270 -38.51894 -36.62097 -35.66355 -34.46588 -33.68635 -31.97087 -30.64629 -30.09508 -28.11868 -27.53961 -26.92938 -24.63044 -23.78483 -22.97486 -22.81988 -21.03260 -20.43803 -19.67392 -18.85960 -17.87912 -17.66513 -17.15949 -16.75994 -16.52753 -16.36981 -16.11665 -15.75191 -15.68993 -15.58937 -15.33386 -14.86343 -14.75660 -14.58768 -14.26759 -14.05354 -13.83987 -13.53150 -13.41183 -13.19655 -12.98929 -12.84583 -12.66430 -12.54773 -12.51814 -12.35068 -12.17738 -12.13000 -11.92680 -11.39595 -11.25162 -11.17373 -10.87397 -10.44805 -10.26138 -9.88398 -9.51849 -8.56128 -8.51719 -6.17230 -0.25367 0.58857 1.10243 1.35783 1.46705 1.51241 1.84977 2.15634 2.22425 2.82606 2.86025 3.19047 3.41653 3.52170 3.61389 3.80700 3.95998 3.98560 4.01558 4.06129 4.07773 4.17119 4.22878 4.32921 4.41716 4.48334 4.56928 4.59270 4.65782 4.71920 4.79378 4.85218 4.92600 4.96527 5.02933 5.07344 5.15519 5.18907 5.25274 5.33726 5.38372 5.56143 5.63788 5.65987 5.83159 5.97720 6.08312 6.11357 6.38177 6.92900 7.12959 7.70344 8.70279 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.027553 B = 0.002187 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.976547 B =12798.008207 C =13539.487293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.110 3.890 3 H 0.090 0.910 4 C 0.048 3.952 5 O -0.392 6.392 6 C 0.056 3.944 7 C 0.110 3.890 8 H 0.080 0.920 9 C -0.145 4.145 10 N -0.625 5.625 11 C 0.558 3.442 12 O -0.570 6.570 13 C -0.275 4.275 14 C -0.011 4.011 15 C -0.162 4.162 16 C -0.041 4.041 17 C -0.203 4.203 18 C 0.128 3.872 19 O -0.219 6.219 20 C -0.416 4.416 21 H 0.104 0.896 22 C -0.018 4.018 23 N -0.913 5.913 24 Si 1.017 2.983 25 H -0.257 1.257 26 H -0.271 1.271 27 H -0.258 1.258 28 C -0.247 4.247 29 C -0.045 4.045 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.129 0.871 34 H 0.062 0.938 35 H 0.127 0.873 36 H 0.056 0.944 37 H 0.041 0.959 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.192 0.808 41 H 0.117 0.883 42 H 0.157 0.843 43 H 0.125 0.875 44 H 0.275 0.725 45 H 0.123 0.877 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.634 4.728 -3.848 24.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.007 3.993 3 H 0.107 0.893 4 C -0.030 4.030 5 O -0.310 6.310 6 C -0.022 4.022 7 C 0.008 3.992 8 H 0.098 0.902 9 C -0.203 4.203 10 N -0.361 5.361 11 C 0.352 3.648 12 O -0.451 6.451 13 C -0.295 4.295 14 C -0.030 4.030 15 C -0.163 4.163 16 C -0.059 4.059 17 C -0.222 4.222 18 C 0.076 3.924 19 O -0.124 6.124 20 C -0.492 4.492 21 H 0.121 0.879 22 C -0.217 4.217 23 N -0.550 5.550 24 Si 0.836 3.164 25 H -0.182 1.182 26 H -0.196 1.196 27 H -0.182 1.182 28 C -0.266 4.266 29 C -0.063 4.063 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.147 0.853 34 H 0.080 0.920 35 H 0.144 0.856 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.208 0.792 41 H 0.135 0.865 42 H 0.174 0.826 43 H 0.143 0.857 44 H 0.084 0.916 45 H 0.141 0.859 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 23.672 4.669 -3.725 24.414 hybrid contribution -1.098 -0.243 0.900 1.441 sum 22.574 4.426 -2.825 23.177 Atomic orbital electron populations 1.23653 0.93096 1.04197 1.05018 1.21973 0.95992 0.96654 0.84695 0.89251 1.23241 0.80936 1.00872 0.97910 1.87952 1.22950 1.71948 1.48178 1.23147 1.02107 0.93088 0.83837 1.21973 0.80685 0.99513 0.97067 0.90175 1.21984 1.01901 0.98519 0.97855 1.48197 1.07847 1.59849 1.20248 1.18511 0.87329 0.75351 0.83616 1.90747 1.78761 1.53181 1.22427 1.24654 0.92110 1.08543 1.04158 1.22096 0.90767 0.90791 0.99383 1.18744 0.92922 1.11233 0.93400 1.21214 0.93452 0.94862 0.96331 1.20411 0.93305 1.10746 0.97727 1.20181 0.84802 0.92752 0.94710 1.83892 1.13925 1.78792 1.35809 1.21820 0.90073 1.50208 0.87103 0.87894 1.26575 0.98165 0.95394 1.01523 1.70137 1.16474 1.45383 1.23018 0.84672 0.76199 0.79842 0.75723 1.18164 1.19584 1.18194 1.21196 0.97440 1.11926 0.96065 1.21280 0.91379 0.94162 0.99469 0.88277 0.88797 0.89242 0.85289 0.91992 0.85554 0.92541 0.94006 0.89713 0.91667 0.79214 0.86537 0.82552 0.85703 0.91597 0.85922 0.84190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.54 7.45 71.98 0.54 -2.00 16 2 C 0.11 1.54 3.67 44.83 0.16 1.70 16 3 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 4 C 0.05 0.57 6.20 71.94 0.45 1.01 16 5 O -0.39 -6.11 10.74 -148.98 -1.60 -7.71 16 6 C 0.06 0.75 6.28 72.08 0.45 1.21 16 7 C 0.11 1.91 3.66 44.96 0.16 2.07 16 8 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 9 C -0.15 -2.76 7.76 71.98 0.56 -2.20 16 10 N -0.63 -12.27 3.03 -775.77 -2.35 -14.62 16 11 C 0.56 14.08 6.55 86.33 0.57 14.64 16 12 O -0.57 -18.00 13.13 -4.43 -0.06 -18.06 16 13 C -0.28 -6.33 6.22 23.61 0.15 -6.19 16 14 C -0.01 -0.29 9.45 23.82 0.23 -0.06 16 15 C -0.16 -4.99 5.87 -20.13 -0.12 -5.10 16 16 C -0.04 -1.23 9.40 22.55 0.21 -1.02 16 17 C -0.20 -7.84 9.97 22.35 0.22 -7.62 16 18 C 0.13 5.99 6.66 22.72 0.15 6.15 16 19 O -0.22 -12.56 9.74 -20.31 -0.20 -12.76 16 20 C -0.42 -23.30 9.44 67.93 0.64 -22.66 16 21 H 0.10 5.28 5.26 -2.91 -0.02 5.26 16 22 C -0.02 -0.97 5.49 84.85 0.47 -0.51 16 23 N -0.91 -54.06 13.67 21.62 0.30 -53.77 16 24 Si 1.02 41.33 29.55 68.60 2.03 43.36 16 25 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 26 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 27 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 28 C -0.25 -10.32 9.11 22.34 0.20 -10.11 16 29 C -0.04 -1.52 9.78 22.55 0.22 -1.30 16 30 H 0.10 1.70 3.95 -44.73 -0.18 1.52 16 31 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.09 0.91 6.17 -2.39 -0.01 0.90 16 33 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 0.73 7.93 -2.38 -0.02 0.71 16 35 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.04 0.93 7.45 -2.38 -0.02 0.91 16 38 H 0.08 1.11 8.13 -2.39 -0.02 1.09 16 39 H 0.06 1.59 6.39 -2.38 -0.02 1.58 16 40 H 0.19 3.43 1.62 -34.85 -0.06 3.37 16 41 H 0.12 3.25 7.54 -2.91 -0.02 3.23 16 42 H 0.16 3.32 5.81 -2.91 -0.02 3.30 16 43 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 44 H 0.27 14.92 8.31 -92.70 -0.77 14.15 16 45 H 0.12 5.21 5.68 -2.91 -0.02 5.19 16 46 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -72.08 363.36 4.18 -67.91 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: 0.80 Total: 27.65 kcal Atomic # 6 Polarization: -37.26 SS G_CDS: 5.26 Total: -32.00 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: -2.05 Total: -68.39 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -1.86 Total: -38.53 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -72.08 4.18 -67.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131270814.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.759 kcal (2) G-P(sol) polarization free energy of solvation -72.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds