Wall clock time and date at job start Tue Mar 31 2020 17:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.70781 * 2 1 4 4 C 1.53718 * 109.74360 * 120.76714 * 2 1 3 5 5 O 1.42955 * 109.14448 * 172.16836 * 4 2 1 6 6 C 1.42965 * 114.16652 * 297.28685 * 5 4 2 7 7 C 1.53295 * 109.22392 * 62.58182 * 6 5 4 8 8 H 1.09003 * 109.68014 * 187.97561 * 7 6 5 9 9 C 1.53001 * 109.70999 * 67.43993 * 7 6 5 10 10 N 1.47150 * 108.38357 * 307.69853 * 7 6 5 11 11 C 1.34772 * 120.98244 * 230.51116 * 10 7 6 12 12 O 1.21724 * 119.99953 * 185.62160 * 11 10 7 13 13 C 1.46251 * 120.00245 * 5.62164 * 11 10 7 14 14 C 1.35020 * 120.00260 * 185.36242 * 13 11 10 15 15 C 1.46965 * 119.99868 * 179.97438 * 14 13 11 16 16 C 1.40025 * 120.09964 * 179.97438 * 15 14 13 17 17 C 1.37600 * 119.89723 * 179.97438 * 16 15 14 18 18 C 1.39171 * 120.10181 * 359.97438 * 17 16 15 19 19 O 1.35571 * 119.90061 * 180.02562 * 18 17 16 20 20 C 1.34779 * 116.99624 * 354.19115 * 19 18 17 21 21 H 1.07998 * 120.00314 * 5.08010 * 20 19 18 22 22 C 1.38722 * 120.00048 * 185.08333 * 20 19 18 23 23 N 1.31513 * 119.99676 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00097 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47094 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47001 * 119.99663 * 24 22 20 27 27 H 1.48504 * 109.46762 * 239.99261 * 24 22 20 28 28 C 1.39183 * 120.20410 * 0.02562 * 18 17 16 29 29 C 1.37595 * 120.09888 * 359.97438 * 28 18 17 30 30 H 1.09009 * 109.47219 * 172.21742 * 1 2 3 31 31 H 1.09001 * 109.47758 * 292.22024 * 1 2 3 32 32 H 1.08995 * 109.47267 * 52.22291 * 1 2 3 33 33 H 1.08998 * 109.65709 * 52.19991 * 4 2 1 34 34 H 1.09001 * 109.48361 * 292.02428 * 4 2 1 35 35 H 1.09002 * 109.51199 * 302.65929 * 6 5 4 36 36 H 1.09003 * 109.55500 * 182.53264 * 6 5 4 37 37 H 1.08997 * 109.47306 * 301.05184 * 9 7 6 38 38 H 1.08999 * 109.47050 * 61.05757 * 9 7 6 39 39 H 1.09000 * 109.46570 * 181.05565 * 9 7 6 40 40 H 1.08001 * 119.99713 * 5.36134 * 13 11 10 41 41 H 1.08001 * 120.00027 * 359.97438 * 14 13 11 42 42 H 1.07998 * 120.04850 * 0.25376 * 16 15 14 43 43 H 1.08002 * 119.94722 * 179.97438 * 17 16 15 44 44 H 0.96996 * 119.99866 * 180.02562 * 23 22 20 45 45 H 1.07994 * 119.94736 * 179.97438 * 28 18 17 46 46 H 1.08001 * 120.04848 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0493 -0.7401 1.2432 5 8 3.4669 -0.8928 1.1399 6 6 3.8906 -1.6867 0.0290 7 6 3.4648 -1.0002 -1.2738 8 1 3.6566 -1.6629 -2.1177 9 6 4.2495 0.3012 -1.4517 10 7 2.0256 -0.7041 -1.1933 11 6 1.1871 -1.0621 -2.1858 12 8 0.0197 -0.7194 -2.1496 13 6 1.6798 -1.8625 -3.3064 14 6 0.8696 -2.1298 -4.3529 15 6 1.3650 -2.9335 -5.4792 16 6 0.5264 -3.2125 -6.5653 17 6 0.9947 -3.9650 -7.6178 18 6 2.2998 -4.4482 -7.6042 19 8 2.7571 -5.1888 -8.6436 20 6 1.8647 -5.5210 -9.5975 21 1 0.8587 -5.1307 -9.5553 22 6 2.2385 -6.3645 -10.6334 23 7 3.4638 -6.8395 -10.6850 24 14 1.0020 -6.8245 -11.9559 25 1 -0.2966 -6.1629 -11.6709 26 1 1.5049 -6.3791 -13.2802 27 1 0.8146 -8.2976 -11.9674 28 6 3.1369 -4.1735 -6.5268 29 6 2.6773 -3.4218 -5.4699 30 1 -0.3634 -1.0183 -0.1392 31 1 -0.3635 0.3886 0.9513 32 1 -0.3633 0.6295 -0.8122 33 1 1.5810 -1.7223 1.3074 34 1 1.8094 -0.1632 2.1364 35 1 3.4291 -2.6724 0.0889 36 1 4.9755 -1.7910 0.0478 37 1 4.0624 0.9574 -0.6017 38 1 5.3147 0.0779 -1.5108 39 1 3.9302 0.7953 -2.3693 40 1 2.6918 -2.2397 -3.2968 41 1 -0.1425 -1.7529 -4.3623 42 1 -0.4849 -2.8337 -6.5789 43 1 0.3485 -4.1810 -8.4558 44 1 3.7253 -7.4290 -11.4095 45 1 4.1488 -4.5509 -6.5203 46 1 3.3275 -3.2095 -4.6341 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131271008.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:03 Heat of formation + Delta-G solvation = -49.018339 kcal Electronic energy + Delta-G solvation = -27632.093107 eV Core-core repulsion = 23681.677078 eV Total energy + Delta-G solvation = -3950.416028 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.83903 -39.23558 -38.47670 -36.93628 -35.21320 -34.16523 -32.98517 -32.27092 -30.47372 -30.15276 -28.10477 -27.36960 -25.92705 -25.71707 -23.93076 -22.42312 -22.25930 -21.48090 -19.92416 -18.59152 -17.97379 -17.41886 -17.13467 -16.66970 -16.27721 -15.56826 -15.42442 -15.27991 -14.79877 -14.76284 -14.37561 -14.10052 -13.85777 -13.60372 -13.43936 -13.17173 -13.06763 -12.80826 -12.66310 -12.56002 -12.11318 -12.06222 -11.99125 -11.82408 -11.79517 -11.44578 -11.31682 -11.16677 -11.07909 -10.92471 -10.65510 -10.55082 -10.40052 -9.62653 -9.52645 -9.12682 -8.90657 -8.63005 -8.41863 -7.14816 -6.68045 -4.22774 1.02799 2.10072 2.51128 2.75430 3.01501 3.02910 3.08689 3.47876 3.50468 3.79820 4.34765 4.46027 4.47662 4.58025 4.67784 4.82551 4.86408 4.90005 5.02363 5.05673 5.12738 5.26019 5.26385 5.33920 5.37595 5.44901 5.49759 5.54310 5.60375 5.63104 5.68252 5.88569 5.97743 5.99388 6.08116 6.13536 6.41281 6.44251 6.52146 6.57822 6.75499 6.76072 6.88829 7.09588 7.20194 7.24247 7.38159 7.60411 7.77423 8.27450 8.76860 9.43554 10.48602 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.026628 B = 0.002092 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.289348 B =13381.958749 C =14113.126840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.112 3.888 3 H 0.076 0.924 4 C 0.051 3.949 5 O -0.378 6.378 6 C 0.051 3.949 7 C 0.098 3.902 8 H 0.108 0.892 9 C -0.158 4.158 10 N -0.612 5.612 11 C 0.561 3.439 12 O -0.549 6.549 13 C -0.288 4.288 14 C 0.041 3.959 15 C -0.200 4.200 16 C -0.034 4.034 17 C -0.242 4.242 18 C 0.167 3.833 19 O -0.162 6.162 20 C -0.393 4.393 21 H 0.098 0.902 22 C 0.041 3.959 23 N -0.851 5.851 24 Si 0.945 3.055 25 H -0.264 1.264 26 H -0.274 1.274 27 H -0.274 1.274 28 C -0.199 4.199 29 C -0.043 4.043 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.103 0.897 35 H 0.057 0.943 36 H 0.106 0.894 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.114 0.886 43 H 0.131 0.869 44 H 0.274 0.726 45 H 0.121 0.879 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.560 10.598 18.610 21.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.008 3.992 3 H 0.094 0.906 4 C -0.027 4.027 5 O -0.296 6.296 6 C -0.027 4.027 7 C -0.006 4.006 8 H 0.125 0.875 9 C -0.216 4.216 10 N -0.347 5.347 11 C 0.356 3.644 12 O -0.430 6.430 13 C -0.309 4.309 14 C 0.021 3.979 15 C -0.201 4.201 16 C -0.053 4.053 17 C -0.261 4.261 18 C 0.110 3.890 19 O -0.063 6.063 20 C -0.468 4.468 21 H 0.115 0.885 22 C -0.165 4.165 23 N -0.484 5.484 24 Si 0.769 3.231 25 H -0.189 1.189 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.218 4.218 29 C -0.061 4.061 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.076 0.924 36 H 0.124 0.876 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.132 0.868 43 H 0.149 0.851 44 H 0.084 0.916 45 H 0.139 0.861 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.667 10.585 18.520 21.342 hybrid contribution -0.609 -0.383 -0.893 1.147 sum -1.276 10.202 17.627 20.407 Atomic orbital electron populations 1.22098 0.91959 1.04190 1.01170 1.21969 0.96468 0.95984 0.84757 0.90617 1.23186 0.81500 1.00293 0.97719 1.87940 1.21903 1.72232 1.47549 1.23036 1.00894 0.93528 0.85199 1.22081 0.80499 0.98329 0.99678 0.87459 1.22052 0.99859 0.97145 1.02563 1.48122 1.07584 1.59316 1.19635 1.18363 0.85082 0.79044 0.81939 1.90800 1.17603 1.56544 1.78014 1.22537 1.01901 1.09470 0.96983 1.22290 0.97739 0.87988 0.89879 1.18456 0.95584 1.08891 0.97130 1.20986 0.97844 0.94410 0.92021 1.21104 0.97125 1.06323 1.01564 1.19611 0.91833 0.89903 0.87604 1.83902 1.37489 1.57923 1.26966 1.21529 0.93899 1.29229 1.02156 0.88472 1.25406 0.97433 0.95430 0.98228 1.70022 1.17129 1.29502 1.31741 0.85578 0.79325 0.78822 0.79368 1.18853 1.19896 1.19889 1.20145 1.00539 1.06926 0.94212 1.20848 0.94201 0.94575 0.96478 0.91626 0.93675 0.89807 0.92568 0.87927 0.92434 0.87571 0.91835 0.91218 0.92050 0.85871 0.85962 0.86825 0.85105 0.91617 0.86116 0.86605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 7.65 37.16 0.28 -1.19 16 2 C 0.11 1.12 3.31 -67.20 -0.22 0.90 16 3 H 0.08 0.74 7.65 -51.93 -0.40 0.34 16 4 C 0.05 0.44 6.31 37.53 0.24 0.67 16 5 O -0.38 -3.61 10.37 -35.23 -0.37 -3.98 16 6 C 0.05 0.41 6.36 37.31 0.24 0.65 16 7 C 0.10 0.87 3.15 -67.42 -0.21 0.66 16 8 H 0.11 0.90 5.40 -51.93 -0.28 0.62 16 9 C -0.16 -1.29 9.24 37.16 0.34 -0.94 16 10 N -0.61 -6.85 2.71 -158.70 -0.43 -7.28 16 11 C 0.56 7.79 7.40 -13.04 -0.10 7.69 16 12 O -0.55 -8.90 12.00 5.17 0.06 -8.84 16 13 C -0.29 -3.89 8.74 -37.51 -0.33 -4.21 16 14 C 0.04 0.61 9.45 -37.19 -0.35 0.26 16 15 C -0.20 -3.33 5.87 -105.02 -0.62 -3.95 16 16 C -0.03 -0.60 9.78 -39.14 -0.38 -0.98 16 17 C -0.24 -4.94 9.14 -39.47 -0.36 -5.30 16 18 C 0.17 3.78 6.66 -38.88 -0.26 3.52 16 19 O -0.16 -4.35 9.74 0.74 0.01 -4.34 16 20 C -0.39 -10.33 9.48 30.91 0.29 -10.04 16 21 H 0.10 2.35 5.18 -52.49 -0.27 2.08 16 22 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 23 N -0.85 -23.63 13.67 55.48 0.76 -22.87 16 24 Si 0.95 19.37 29.55 -169.99 -5.02 14.34 16 25 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 26 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 27 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 28 C -0.20 -3.90 9.97 -39.47 -0.39 -4.29 16 29 C -0.04 -0.71 9.40 -39.15 -0.37 -1.08 16 30 H 0.06 0.82 7.01 -51.92 -0.36 0.46 16 31 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 1.08 6.58 -51.93 -0.34 0.74 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.55 7.21 -51.93 -0.37 0.17 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.12 1.44 3.92 -52.49 -0.21 1.24 16 41 H 0.12 1.81 7.53 -52.49 -0.40 1.41 16 42 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 43 H 0.13 2.65 5.62 -52.49 -0.29 2.36 16 44 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 45 H 0.12 2.25 8.06 -52.49 -0.42 1.82 16 46 H 0.12 1.55 6.16 -52.49 -0.32 1.23 16 LS Contribution 370.45 15.07 5.58 5.58 Total: -1.00 -30.10 370.45 -7.89 -37.99 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.19 Total: 6.05 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -2.29 Total: -16.66 kcal Atomic # 7 Polarization: -30.48 SS G_CDS: 0.33 Total: -30.15 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.30 Total: -17.16 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.10 -7.89 -37.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131271008.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.029 kcal (2) G-P(sol) polarization free energy of solvation -30.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds