Wall clock time and date at job start Tue Mar 31 2020 17:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.70781 * 2 1 4 4 C 1.53718 * 109.74360 * 120.76714 * 2 1 3 5 5 O 1.42955 * 109.14448 * 172.16836 * 4 2 1 6 6 C 1.42965 * 114.16652 * 297.28685 * 5 4 2 7 7 C 1.53295 * 109.22392 * 62.58182 * 6 5 4 8 8 H 1.09003 * 109.68014 * 187.97561 * 7 6 5 9 9 C 1.53001 * 109.70999 * 67.43993 * 7 6 5 10 10 N 1.47150 * 108.38357 * 307.69853 * 7 6 5 11 11 C 1.34772 * 120.98244 * 230.51116 * 10 7 6 12 12 O 1.21724 * 119.99953 * 185.62160 * 11 10 7 13 13 C 1.46251 * 120.00245 * 5.62164 * 11 10 7 14 14 C 1.35020 * 120.00260 * 185.36242 * 13 11 10 15 15 C 1.46965 * 119.99868 * 179.97438 * 14 13 11 16 16 C 1.40025 * 120.09964 * 179.97438 * 15 14 13 17 17 C 1.37600 * 119.89723 * 179.97438 * 16 15 14 18 18 C 1.39171 * 120.10181 * 359.97438 * 17 16 15 19 19 O 1.35571 * 119.90061 * 180.02562 * 18 17 16 20 20 C 1.34779 * 116.99624 * 354.19115 * 19 18 17 21 21 H 1.07998 * 120.00314 * 5.08010 * 20 19 18 22 22 C 1.38722 * 120.00048 * 185.08333 * 20 19 18 23 23 N 1.31513 * 119.99676 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00097 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47094 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47001 * 119.99663 * 24 22 20 27 27 H 1.48504 * 109.46762 * 239.99261 * 24 22 20 28 28 C 1.39183 * 120.20410 * 0.02562 * 18 17 16 29 29 C 1.37595 * 120.09888 * 359.97438 * 28 18 17 30 30 H 1.09009 * 109.47219 * 172.21742 * 1 2 3 31 31 H 1.09001 * 109.47758 * 292.22024 * 1 2 3 32 32 H 1.08995 * 109.47267 * 52.22291 * 1 2 3 33 33 H 1.08998 * 109.65709 * 52.19991 * 4 2 1 34 34 H 1.09001 * 109.48361 * 292.02428 * 4 2 1 35 35 H 1.09002 * 109.51199 * 302.65929 * 6 5 4 36 36 H 1.09003 * 109.55500 * 182.53264 * 6 5 4 37 37 H 1.08997 * 109.47306 * 301.05184 * 9 7 6 38 38 H 1.08999 * 109.47050 * 61.05757 * 9 7 6 39 39 H 1.09000 * 109.46570 * 181.05565 * 9 7 6 40 40 H 1.08001 * 119.99713 * 5.36134 * 13 11 10 41 41 H 1.08001 * 120.00027 * 359.97438 * 14 13 11 42 42 H 1.07998 * 120.04850 * 0.25376 * 16 15 14 43 43 H 1.08002 * 119.94722 * 179.97438 * 17 16 15 44 44 H 0.96996 * 119.99866 * 180.02562 * 23 22 20 45 45 H 1.07994 * 119.94736 * 179.97438 * 28 18 17 46 46 H 1.08001 * 120.04848 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0493 -0.7401 1.2432 5 8 3.4669 -0.8928 1.1399 6 6 3.8906 -1.6867 0.0290 7 6 3.4648 -1.0002 -1.2738 8 1 3.6566 -1.6629 -2.1177 9 6 4.2495 0.3012 -1.4517 10 7 2.0256 -0.7041 -1.1933 11 6 1.1871 -1.0621 -2.1858 12 8 0.0197 -0.7194 -2.1496 13 6 1.6798 -1.8625 -3.3064 14 6 0.8696 -2.1298 -4.3529 15 6 1.3650 -2.9335 -5.4792 16 6 0.5264 -3.2125 -6.5653 17 6 0.9947 -3.9650 -7.6178 18 6 2.2998 -4.4482 -7.6042 19 8 2.7571 -5.1888 -8.6436 20 6 1.8647 -5.5210 -9.5975 21 1 0.8587 -5.1307 -9.5553 22 6 2.2385 -6.3645 -10.6334 23 7 3.4638 -6.8395 -10.6850 24 14 1.0020 -6.8245 -11.9559 25 1 -0.2966 -6.1629 -11.6709 26 1 1.5049 -6.3791 -13.2802 27 1 0.8146 -8.2976 -11.9674 28 6 3.1369 -4.1735 -6.5268 29 6 2.6773 -3.4218 -5.4699 30 1 -0.3634 -1.0183 -0.1392 31 1 -0.3635 0.3886 0.9513 32 1 -0.3633 0.6295 -0.8122 33 1 1.5810 -1.7223 1.3074 34 1 1.8094 -0.1632 2.1364 35 1 3.4291 -2.6724 0.0889 36 1 4.9755 -1.7910 0.0478 37 1 4.0624 0.9574 -0.6017 38 1 5.3147 0.0779 -1.5108 39 1 3.9302 0.7953 -2.3693 40 1 2.6918 -2.2397 -3.2968 41 1 -0.1425 -1.7529 -4.3623 42 1 -0.4849 -2.8337 -6.5789 43 1 0.3485 -4.1810 -8.4558 44 1 3.7253 -7.4290 -11.4095 45 1 4.1488 -4.5509 -6.5203 46 1 3.3275 -3.2095 -4.6341 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131271008.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:02 Heat of formation + Delta-G solvation = -66.603526 kcal Electronic energy + Delta-G solvation = -27632.855658 eV Core-core repulsion = 23681.677078 eV Total energy + Delta-G solvation = -3951.178579 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.74798 -40.83490 -39.43265 -38.49253 -36.07509 -35.17828 -34.44108 -33.75881 -31.98139 -31.09942 -29.45692 -28.07420 -27.51564 -26.64624 -25.12493 -23.76094 -23.32970 -22.61753 -21.16597 -20.03895 -19.20734 -18.80004 -18.39683 -17.55109 -17.09356 -16.57030 -16.49351 -16.31299 -16.20855 -15.93613 -15.70998 -15.62524 -15.34878 -14.78754 -14.62715 -14.46571 -14.12637 -13.89405 -13.64997 -13.55845 -13.40779 -13.31485 -13.20208 -12.84231 -12.73329 -12.69490 -12.53090 -12.40036 -12.14640 -12.11115 -12.03293 -11.63516 -11.21761 -11.15365 -11.12224 -10.57481 -10.17558 -9.90284 -9.52232 -8.68906 -8.52989 -6.18904 -0.26691 0.57595 1.11726 1.35635 1.44548 1.53379 1.86466 2.14527 2.32230 2.84519 2.85354 3.16711 3.41100 3.51326 3.64539 3.80730 3.88739 3.99266 4.03432 4.09050 4.12754 4.16455 4.30646 4.35595 4.46557 4.47423 4.61957 4.65109 4.67402 4.76127 4.79946 4.89515 4.92445 4.95145 5.02990 5.06716 5.18040 5.18743 5.30015 5.32898 5.37633 5.55204 5.62490 5.64210 5.79693 5.96846 6.09146 6.10203 6.39186 6.91622 7.19932 7.68569 8.69244 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.026628 B = 0.002092 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.289348 B =13381.958749 C =14113.126840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.108 3.892 3 H 0.082 0.918 4 C 0.055 3.945 5 O -0.388 6.388 6 C 0.050 3.950 7 C 0.091 3.909 8 H 0.117 0.883 9 C -0.153 4.153 10 N -0.607 5.607 11 C 0.552 3.448 12 O -0.575 6.575 13 C -0.253 4.253 14 C 0.020 3.980 15 C -0.171 4.171 16 C -0.040 4.040 17 C -0.249 4.249 18 C 0.130 3.870 19 O -0.219 6.219 20 C -0.416 4.416 21 H 0.105 0.895 22 C -0.019 4.019 23 N -0.913 5.913 24 Si 1.018 2.982 25 H -0.251 1.251 26 H -0.268 1.268 27 H -0.268 1.268 28 C -0.205 4.205 29 C -0.037 4.037 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.124 0.876 35 H 0.057 0.943 36 H 0.130 0.870 37 H 0.057 0.943 38 H 0.089 0.911 39 H 0.050 0.950 40 H 0.148 0.852 41 H 0.125 0.875 42 H 0.143 0.857 43 H 0.124 0.876 44 H 0.275 0.725 45 H 0.124 0.876 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.876 12.340 21.727 25.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.005 3.995 3 H 0.100 0.900 4 C -0.022 4.022 5 O -0.306 6.306 6 C -0.027 4.027 7 C -0.012 4.012 8 H 0.134 0.866 9 C -0.211 4.211 10 N -0.340 5.340 11 C 0.345 3.655 12 O -0.458 6.458 13 C -0.273 4.273 14 C 0.000 4.000 15 C -0.172 4.172 16 C -0.058 4.058 17 C -0.268 4.268 18 C 0.078 3.922 19 O -0.124 6.124 20 C -0.491 4.491 21 H 0.123 0.877 22 C -0.217 4.217 23 N -0.550 5.550 24 Si 0.837 3.163 25 H -0.174 1.174 26 H -0.193 1.193 27 H -0.193 1.193 28 C -0.224 4.224 29 C -0.055 4.055 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.142 0.858 35 H 0.076 0.924 36 H 0.147 0.853 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.165 0.835 41 H 0.143 0.857 42 H 0.161 0.839 43 H 0.142 0.858 44 H 0.084 0.916 45 H 0.142 0.858 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.983 12.378 21.715 25.014 hybrid contribution -0.546 -0.547 -1.249 1.469 sum -1.529 11.831 20.466 23.689 Atomic orbital electron populations 1.21939 0.92591 1.02453 1.01597 1.22107 0.95948 0.96495 0.84962 0.90032 1.23213 0.81160 1.00268 0.97609 1.87942 1.22154 1.72452 1.48045 1.23174 1.02330 0.93083 0.84153 1.22346 0.78984 0.99104 1.00736 0.86566 1.22020 1.00954 0.96412 1.01758 1.48235 1.08456 1.58171 1.19164 1.18493 0.85060 0.79317 0.82616 1.90818 1.18873 1.57434 1.78669 1.22853 1.02381 1.06489 0.95607 1.22168 0.98451 0.89374 0.89971 1.18772 0.95205 1.06488 0.96748 1.21305 0.99467 0.93710 0.91274 1.21198 0.96403 1.06797 1.02400 1.20189 0.93490 0.90409 0.88083 1.83885 1.38519 1.61191 1.28800 1.21927 0.94458 1.29951 1.02795 0.87735 1.26603 0.99452 0.95196 1.00485 1.70151 1.19533 1.31923 1.33395 0.84531 0.77067 0.78580 0.76086 1.17446 1.19298 1.19325 1.20416 1.00576 1.07243 0.94206 1.21247 0.94695 0.93020 0.96502 0.93619 0.91150 0.92198 0.92860 0.85790 0.92426 0.85256 0.92367 0.89178 0.93070 0.83476 0.85714 0.83881 0.85809 0.91581 0.85811 0.82453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 7.65 71.98 0.55 -1.97 16 2 C 0.11 1.86 3.31 45.11 0.15 2.01 16 3 H 0.08 1.36 7.65 -2.39 -0.02 1.34 16 4 C 0.05 0.77 6.31 72.22 0.46 1.22 16 5 O -0.39 -6.00 10.37 -148.98 -1.55 -7.54 16 6 C 0.05 0.61 6.36 72.08 0.46 1.06 16 7 C 0.09 1.27 3.15 44.97 0.14 1.41 16 8 H 0.12 1.38 5.40 -2.39 -0.01 1.37 16 9 C -0.15 -1.94 9.24 71.98 0.66 -1.28 16 10 N -0.61 -11.70 2.71 -774.21 -2.10 -13.80 16 11 C 0.55 13.71 7.40 86.33 0.64 14.35 16 12 O -0.58 -17.64 12.00 -4.42 -0.05 -17.69 16 13 C -0.25 -5.81 8.74 23.61 0.21 -5.61 16 14 C 0.02 0.53 9.45 23.82 0.23 0.76 16 15 C -0.17 -5.23 5.87 -20.13 -0.12 -5.35 16 16 C -0.04 -1.32 9.78 22.55 0.22 -1.10 16 17 C -0.25 -10.31 9.14 22.34 0.20 -10.11 16 18 C 0.13 6.13 6.66 22.72 0.15 6.28 16 19 O -0.22 -12.55 9.74 -20.26 -0.20 -12.75 16 20 C -0.42 -23.20 9.48 67.94 0.64 -22.56 16 21 H 0.11 5.35 5.18 -2.91 -0.02 5.34 16 22 C -0.02 -1.02 5.49 84.86 0.47 -0.55 16 23 N -0.91 -53.99 13.67 21.62 0.30 -53.70 16 24 Si 1.02 41.27 29.55 68.60 2.03 43.30 16 25 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 26 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 27 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 28 C -0.21 -8.00 9.97 22.34 0.22 -7.78 16 29 C -0.04 -1.12 9.40 22.55 0.21 -0.91 16 30 H 0.04 1.08 7.01 -2.38 -0.02 1.06 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 1.47 6.58 -2.39 -0.02 1.46 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.06 0.82 7.21 -2.39 -0.02 0.80 16 38 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.15 2.64 3.92 -2.91 -0.01 2.63 16 41 H 0.13 3.33 7.53 -2.91 -0.02 3.31 16 42 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 43 H 0.12 5.21 5.62 -2.91 -0.02 5.20 16 44 H 0.28 14.83 8.31 -92.71 -0.77 14.06 16 45 H 0.12 4.66 8.06 -2.91 -0.02 4.63 16 46 H 0.16 3.42 6.16 -2.91 -0.02 3.41 16 Total: -1.00 -70.85 370.45 4.93 -65.92 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 1.00 Total: 26.36 kcal Atomic # 6 Polarization: -35.61 SS G_CDS: 5.49 Total: -30.11 kcal Atomic # 7 Polarization: -65.69 SS G_CDS: -1.80 Total: -67.49 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -1.80 Total: -37.98 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -70.85 4.93 -65.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131271008.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.682 kcal (2) G-P(sol) polarization free energy of solvation -70.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds