Wall clock time and date at job start Tue Mar 31 2020 17:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.70644 * 2 1 4 4 C 1.53712 * 109.83444 * 239.28405 * 2 1 3 5 5 H 1.09005 * 109.65202 * 172.88799 * 4 2 1 6 6 C 1.52998 * 109.48378 * 52.72187 * 4 2 1 7 7 O 1.42955 * 109.14995 * 292.85484 * 4 2 1 8 8 C 1.42960 * 114.17134 * 297.28837 * 7 4 2 9 9 C 1.53300 * 109.22006 * 62.57855 * 8 7 4 10 10 N 1.47150 * 108.38455 * 307.70160 * 9 8 7 11 11 C 1.34775 * 120.98235 * 230.50612 * 10 9 8 12 12 O 1.21725 * 120.00173 * 174.65323 * 11 10 9 13 13 C 1.46256 * 119.99809 * 354.66054 * 11 10 9 14 14 C 1.35021 * 119.99812 * 184.95565 * 13 11 10 15 15 C 1.46964 * 119.99834 * 179.97438 * 14 13 11 16 16 C 1.40026 * 120.09907 * 180.02562 * 15 14 13 17 17 C 1.37602 * 119.89876 * 179.97438 * 16 15 14 18 18 C 1.39178 * 120.09822 * 0.02562 * 17 16 15 19 19 O 1.35565 * 119.89746 * 179.97438 * 18 17 16 20 20 C 1.34780 * 117.00333 * 174.66807 * 19 18 17 21 21 H 1.08003 * 119.99767 * 5.03620 * 20 19 18 22 22 C 1.38719 * 120.00487 * 185.02751 * 20 19 18 23 23 N 1.31510 * 119.99834 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00209 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47404 * 60.00214 * 24 22 20 26 26 H 1.48494 * 109.47191 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.46906 * 300.00142 * 24 22 20 28 28 C 1.39172 * 120.20169 * 359.95864 * 18 17 16 29 29 C 1.37600 * 120.10852 * 0.04109 * 28 18 17 30 30 H 1.08998 * 109.46828 * 299.46088 * 1 2 3 31 31 H 1.08990 * 109.47399 * 59.46056 * 1 2 3 32 32 H 1.09006 * 109.46858 * 179.46492 * 1 2 3 33 33 H 1.09003 * 109.47014 * 300.35464 * 6 4 2 34 34 H 1.09001 * 109.47285 * 60.36117 * 6 4 2 35 35 H 1.08997 * 109.47009 * 180.36153 * 6 4 2 36 36 H 1.08999 * 109.51359 * 302.66031 * 8 7 4 37 37 H 1.08997 * 109.55650 * 182.52774 * 8 7 4 38 38 H 1.08994 * 109.68507 * 187.97415 * 9 8 7 39 39 H 1.09005 * 109.67716 * 67.42124 * 9 8 7 40 40 H 1.07996 * 120.00300 * 4.95123 * 13 11 10 41 41 H 1.08002 * 120.00325 * 0.02562 * 14 13 11 42 42 H 1.07997 * 120.05146 * 359.69891 * 16 15 14 43 43 H 1.07994 * 119.94890 * 179.97438 * 17 16 15 44 44 H 0.96992 * 120.00141 * 179.97438 * 23 22 20 45 45 H 1.08009 * 119.94578 * 180.02562 * 28 18 17 46 46 H 1.07997 * 120.05263 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0516 -0.7386 -1.2431 5 1 3.1342 -0.6289 -1.3073 6 6 1.4029 -0.1485 -2.4968 7 8 1.7173 -2.1246 -1.1397 8 6 2.3218 -2.7913 -0.0289 9 6 1.8191 -2.1587 1.2739 10 7 2.0257 -0.7040 1.1934 11 6 2.6454 -0.0353 2.1859 12 8 2.8939 1.1495 2.0590 13 6 3.0196 -0.7333 3.4155 14 6 3.5492 -0.0440 4.4486 15 6 3.9246 -0.7453 5.6844 16 6 4.4735 -0.0324 6.7574 17 6 4.8230 -0.6931 7.9127 18 6 4.6323 -2.0679 8.0154 19 8 4.9786 -2.7148 9.1553 20 6 4.6679 -4.0239 9.2346 21 1 4.2395 -4.5298 8.3820 22 6 4.8985 -4.7216 10.4112 23 7 5.4198 -4.1055 11.4495 24 14 4.4685 -6.5361 10.5207 25 1 5.2393 -7.2900 9.4998 26 1 4.8088 -7.0446 11.8738 27 1 3.0148 -6.7159 10.2760 28 6 4.0868 -2.7805 6.9517 29 6 3.7342 -2.1283 5.7925 30 1 -0.3633 0.5054 0.8948 31 1 -0.3633 0.5221 -0.8850 32 1 -0.3633 -1.0277 -0.0096 33 1 0.3203 -0.2568 -2.4311 34 1 1.6583 0.9083 -2.5750 35 1 1.7680 -0.6766 -3.3776 36 1 3.4054 -2.6891 -0.0887 37 1 2.0541 -3.8477 -0.0477 38 1 2.3781 -2.5628 2.1178 39 1 0.7577 -2.3724 1.3999 40 1 2.8722 -1.8001 3.4971 41 1 3.6961 1.0229 4.3673 42 1 4.6263 1.0337 6.6766 43 1 5.2468 -0.1441 8.7405 44 1 5.5807 -4.5932 12.2724 45 1 3.9401 -3.8472 7.0361 46 1 3.3114 -2.6822 4.9675 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167382647.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:20 Heat of formation + Delta-G solvation = -60.758756 kcal Electronic energy + Delta-G solvation = -27378.129103 eV Core-core repulsion = 23427.203972 eV Total energy + Delta-G solvation = -3950.925131 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.67916 -39.24730 -38.53701 -36.90911 -35.05226 -34.20304 -33.16585 -32.29370 -30.40415 -29.47458 -29.04059 -28.18875 -25.72168 -25.05853 -23.69011 -23.26181 -22.15268 -20.99770 -19.62340 -18.43252 -18.23937 -17.89273 -16.97886 -16.87134 -16.27361 -15.69633 -15.43157 -14.93115 -14.68657 -14.63047 -14.50638 -13.97061 -13.95104 -13.85166 -13.46775 -13.26596 -13.09462 -12.93671 -12.62707 -12.50799 -12.29366 -12.04355 -11.96052 -11.85955 -11.79182 -11.58529 -11.31947 -11.13573 -11.05295 -10.78113 -10.76482 -10.58674 -10.33234 -9.73381 -9.63395 -9.51818 -8.91368 -8.66923 -8.41624 -7.14856 -6.67903 -4.22904 1.02310 2.10415 2.50860 2.77204 3.01302 3.02893 3.05710 3.38216 3.49708 3.79436 4.28140 4.47524 4.52054 4.60827 4.72226 4.80008 4.86909 4.90049 4.96560 5.04657 5.08170 5.12824 5.23065 5.24977 5.37759 5.45232 5.47791 5.51070 5.56178 5.58552 5.64469 5.66732 5.83658 5.97009 5.99197 6.05014 6.23847 6.47887 6.50113 6.55424 6.73204 6.82643 6.90970 7.07038 7.19619 7.24897 7.34870 7.60654 7.77012 8.22878 8.76436 9.43389 10.48541 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.019675 B = 0.002151 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.795948 B =13015.358948 C =14143.742080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.110 3.890 3 H 0.106 0.894 4 C 0.079 3.921 5 H 0.062 0.938 6 C -0.146 4.146 7 O -0.376 6.376 8 C 0.048 3.952 9 C 0.072 3.928 10 N -0.616 5.616 11 C 0.561 3.439 12 O -0.557 6.557 13 C -0.288 4.288 14 C 0.042 3.958 15 C -0.200 4.200 16 C -0.039 4.039 17 C -0.199 4.199 18 C 0.167 3.833 19 O -0.161 6.161 20 C -0.394 4.394 21 H 0.097 0.903 22 C 0.042 3.958 23 N -0.851 5.851 24 Si 0.945 3.055 25 H -0.268 1.268 26 H -0.276 1.276 27 H -0.267 1.267 28 C -0.243 4.243 29 C -0.037 4.037 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.275 0.725 45 H 0.131 0.869 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.660 2.954 -21.533 23.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.006 3.994 3 H 0.124 0.876 4 C 0.021 3.979 5 H 0.080 0.920 6 C -0.203 4.203 7 O -0.295 6.295 8 C -0.030 4.030 9 C -0.051 4.051 10 N -0.350 5.350 11 C 0.356 3.644 12 O -0.438 6.438 13 C -0.308 4.308 14 C 0.022 3.978 15 C -0.201 4.201 16 C -0.058 4.058 17 C -0.218 4.218 18 C 0.110 3.890 19 O -0.062 6.062 20 C -0.469 4.469 21 H 0.114 0.886 22 C -0.165 4.165 23 N -0.483 5.483 24 Si 0.769 3.231 25 H -0.192 1.192 26 H -0.201 1.201 27 H -0.192 1.192 28 C -0.262 4.262 29 C -0.055 4.055 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.125 0.875 38 H 0.119 0.881 39 H 0.094 0.906 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.136 0.864 43 H 0.140 0.860 44 H 0.085 0.915 45 H 0.148 0.852 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.445 3.476 -21.222 22.757 hybrid contribution -0.065 -1.009 0.338 1.066 sum -7.510 2.467 -20.883 22.329 Atomic orbital electron populations 1.22075 0.94397 1.02756 1.02292 1.21882 0.95020 0.98074 0.84421 0.87650 1.22555 0.98764 0.81845 0.94769 0.91993 1.21829 1.01962 1.00646 0.95894 1.87936 1.72065 1.21912 1.47580 1.22985 0.97505 0.97078 0.85391 1.22471 1.02511 0.80597 0.99549 1.48056 1.59195 1.07889 1.19835 1.18422 0.76293 0.86375 0.83326 1.90760 1.55760 1.16046 1.81188 1.22488 1.13284 1.00457 0.94620 1.22304 0.86232 0.98998 0.90271 1.18452 1.12841 0.93662 0.95159 1.20873 0.94809 0.98467 0.91619 1.20158 1.10167 0.91892 0.99592 1.19610 0.90759 0.91669 0.86924 1.83903 1.66301 1.24391 1.31590 1.21423 1.43289 0.81918 1.00274 0.88594 1.25404 0.96130 1.00829 0.94116 1.70001 1.38284 1.37312 1.02739 0.85711 0.79359 0.79771 0.78274 1.19244 1.20062 1.19238 1.21088 1.09522 1.01008 0.94570 1.20966 0.95280 0.93092 0.96181 0.92344 0.91154 0.91794 0.91121 0.90769 0.91567 0.92559 0.87536 0.88140 0.90611 0.85710 0.85921 0.86370 0.86039 0.91498 0.85157 0.86990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 8.65 37.16 0.32 -1.08 16 2 C 0.11 1.14 2.88 -67.20 -0.19 0.94 16 3 H 0.11 1.24 7.06 -51.93 -0.37 0.87 16 4 C 0.08 0.72 3.11 -26.36 -0.08 0.64 16 5 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 6 C -0.15 -0.99 9.03 37.16 0.34 -0.65 16 7 O -0.38 -3.64 10.01 -35.23 -0.35 -3.99 16 8 C 0.05 0.39 6.99 37.31 0.26 0.65 16 9 C 0.07 0.64 6.11 -3.53 -0.02 0.62 16 10 N -0.62 -7.17 2.71 -166.18 -0.45 -7.62 16 11 C 0.56 8.19 7.62 -13.04 -0.10 8.09 16 12 O -0.56 -9.82 15.71 5.17 0.08 -9.74 16 13 C -0.29 -4.00 8.72 -37.51 -0.33 -4.33 16 14 C 0.04 0.63 9.45 -37.19 -0.35 0.28 16 15 C -0.20 -3.37 5.87 -105.03 -0.62 -3.98 16 16 C -0.04 -0.67 9.78 -39.14 -0.38 -1.06 16 17 C -0.20 -3.96 9.97 -39.46 -0.39 -4.36 16 18 C 0.17 3.79 6.66 -38.89 -0.26 3.53 16 19 O -0.16 -4.33 9.74 0.76 0.01 -4.32 16 20 C -0.39 -10.31 9.48 30.91 0.29 -10.02 16 21 H 0.10 2.29 5.18 -52.48 -0.27 2.02 16 22 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 23 N -0.85 -23.61 13.67 55.48 0.76 -22.85 16 24 Si 0.95 19.21 29.55 -169.99 -5.02 14.18 16 25 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 26 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 27 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 28 C -0.24 -4.89 9.14 -39.47 -0.36 -5.25 16 29 C -0.04 -0.63 9.40 -39.15 -0.37 -1.00 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.50 6.45 -51.93 -0.33 0.16 16 32 H 0.06 0.57 7.21 -51.93 -0.37 0.20 16 33 H 0.07 0.45 6.38 -51.93 -0.33 0.12 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.10 0.82 5.50 -51.93 -0.29 0.54 16 39 H 0.08 0.63 7.65 -51.93 -0.40 0.23 16 40 H 0.13 1.50 3.98 -52.49 -0.21 1.29 16 41 H 0.12 1.84 7.53 -52.49 -0.40 1.44 16 42 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 43 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 44 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.13 2.58 5.61 -52.48 -0.29 2.29 16 46 H 0.11 1.58 6.16 -52.49 -0.32 1.25 16 LS Contribution 373.07 15.07 5.62 5.62 Total: -1.00 -30.91 373.07 -7.80 -38.71 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.10 Total: 5.99 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -2.34 Total: -15.99 kcal Atomic # 7 Polarization: -30.77 SS G_CDS: 0.31 Total: -30.47 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.26 Total: -18.05 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.18 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.91 -7.80 -38.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167382647.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.047 kcal (2) G-P(sol) polarization free energy of solvation -30.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds