Wall clock time and date at job start Tue Mar 31 2020 17:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.70644 * 2 1 4 4 C 1.53712 * 109.83444 * 239.28405 * 2 1 3 5 5 H 1.09005 * 109.65202 * 172.88799 * 4 2 1 6 6 C 1.52998 * 109.48378 * 52.72187 * 4 2 1 7 7 O 1.42955 * 109.14995 * 292.85484 * 4 2 1 8 8 C 1.42960 * 114.17134 * 297.28837 * 7 4 2 9 9 C 1.53300 * 109.22006 * 62.57855 * 8 7 4 10 10 N 1.47150 * 108.38455 * 307.70160 * 9 8 7 11 11 C 1.34775 * 120.98235 * 230.50612 * 10 9 8 12 12 O 1.21725 * 120.00173 * 174.65323 * 11 10 9 13 13 C 1.46256 * 119.99809 * 354.66054 * 11 10 9 14 14 C 1.35021 * 119.99812 * 184.95565 * 13 11 10 15 15 C 1.46964 * 119.99834 * 179.97438 * 14 13 11 16 16 C 1.40026 * 120.09907 * 180.02562 * 15 14 13 17 17 C 1.37602 * 119.89876 * 179.97438 * 16 15 14 18 18 C 1.39178 * 120.09822 * 0.02562 * 17 16 15 19 19 O 1.35565 * 119.89746 * 179.97438 * 18 17 16 20 20 C 1.34780 * 117.00333 * 174.66807 * 19 18 17 21 21 H 1.08003 * 119.99767 * 5.03620 * 20 19 18 22 22 C 1.38719 * 120.00487 * 185.02751 * 20 19 18 23 23 N 1.31510 * 119.99834 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00209 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47404 * 60.00214 * 24 22 20 26 26 H 1.48494 * 109.47191 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.46906 * 300.00142 * 24 22 20 28 28 C 1.39172 * 120.20169 * 359.95864 * 18 17 16 29 29 C 1.37600 * 120.10852 * 0.04109 * 28 18 17 30 30 H 1.08998 * 109.46828 * 299.46088 * 1 2 3 31 31 H 1.08990 * 109.47399 * 59.46056 * 1 2 3 32 32 H 1.09006 * 109.46858 * 179.46492 * 1 2 3 33 33 H 1.09003 * 109.47014 * 300.35464 * 6 4 2 34 34 H 1.09001 * 109.47285 * 60.36117 * 6 4 2 35 35 H 1.08997 * 109.47009 * 180.36153 * 6 4 2 36 36 H 1.08999 * 109.51359 * 302.66031 * 8 7 4 37 37 H 1.08997 * 109.55650 * 182.52774 * 8 7 4 38 38 H 1.08994 * 109.68507 * 187.97415 * 9 8 7 39 39 H 1.09005 * 109.67716 * 67.42124 * 9 8 7 40 40 H 1.07996 * 120.00300 * 4.95123 * 13 11 10 41 41 H 1.08002 * 120.00325 * 0.02562 * 14 13 11 42 42 H 1.07997 * 120.05146 * 359.69891 * 16 15 14 43 43 H 1.07994 * 119.94890 * 179.97438 * 17 16 15 44 44 H 0.96992 * 120.00141 * 179.97438 * 23 22 20 45 45 H 1.08009 * 119.94578 * 180.02562 * 28 18 17 46 46 H 1.07997 * 120.05263 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0516 -0.7386 -1.2431 5 1 3.1342 -0.6289 -1.3073 6 6 1.4029 -0.1485 -2.4968 7 8 1.7173 -2.1246 -1.1397 8 6 2.3218 -2.7913 -0.0289 9 6 1.8191 -2.1587 1.2739 10 7 2.0257 -0.7040 1.1934 11 6 2.6454 -0.0353 2.1859 12 8 2.8939 1.1495 2.0590 13 6 3.0196 -0.7333 3.4155 14 6 3.5492 -0.0440 4.4486 15 6 3.9246 -0.7453 5.6844 16 6 4.4735 -0.0324 6.7574 17 6 4.8230 -0.6931 7.9127 18 6 4.6323 -2.0679 8.0154 19 8 4.9786 -2.7148 9.1553 20 6 4.6679 -4.0239 9.2346 21 1 4.2395 -4.5298 8.3820 22 6 4.8985 -4.7216 10.4112 23 7 5.4198 -4.1055 11.4495 24 14 4.4685 -6.5361 10.5207 25 1 5.2393 -7.2900 9.4998 26 1 4.8088 -7.0446 11.8738 27 1 3.0148 -6.7159 10.2760 28 6 4.0868 -2.7805 6.9517 29 6 3.7342 -2.1283 5.7925 30 1 -0.3633 0.5054 0.8948 31 1 -0.3633 0.5221 -0.8850 32 1 -0.3633 -1.0277 -0.0096 33 1 0.3203 -0.2568 -2.4311 34 1 1.6583 0.9083 -2.5750 35 1 1.7680 -0.6766 -3.3776 36 1 3.4054 -2.6891 -0.0887 37 1 2.0541 -3.8477 -0.0477 38 1 2.3781 -2.5628 2.1178 39 1 0.7577 -2.3724 1.3999 40 1 2.8722 -1.8001 3.4971 41 1 3.6961 1.0229 4.3673 42 1 4.6263 1.0337 6.6766 43 1 5.2468 -0.1441 8.7405 44 1 5.5807 -4.5932 12.2724 45 1 3.9401 -3.8472 7.0361 46 1 3.3114 -2.6822 4.9675 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167382647.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:19 Heat of formation + Delta-G solvation = -79.075426 kcal Electronic energy + Delta-G solvation = -27378.923374 eV Core-core repulsion = 23427.203972 eV Total energy + Delta-G solvation = -3951.719401 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.59873 -40.83954 -39.57129 -38.47711 -35.97336 -35.09172 -34.57027 -33.90684 -31.91600 -30.43438 -29.75455 -29.44623 -27.43200 -26.04397 -24.49366 -24.40697 -23.63293 -22.23737 -20.60866 -19.95335 -19.48098 -19.20985 -18.41952 -17.71160 -17.05592 -16.76294 -16.40385 -16.23850 -16.11498 -15.99872 -15.63476 -15.53119 -15.35775 -15.08956 -14.49888 -14.30613 -14.14693 -14.05496 -13.77018 -13.59069 -13.32863 -13.22755 -13.10133 -12.78396 -12.67453 -12.66998 -12.60309 -12.48011 -12.29550 -12.15321 -11.97276 -11.52643 -11.21099 -11.15341 -11.12288 -10.81868 -10.58518 -9.90271 -9.59533 -8.69618 -8.51608 -6.18022 -0.28981 0.57785 1.09935 1.36695 1.48173 1.52877 1.84901 2.15977 2.27794 2.73914 2.85971 3.17127 3.41782 3.47375 3.63862 3.82565 3.86781 3.98648 4.03229 4.08465 4.13529 4.23562 4.29224 4.35997 4.37659 4.47583 4.50572 4.60528 4.67797 4.74633 4.84795 4.85286 4.92893 4.96212 4.97867 5.02511 5.12259 5.18681 5.25003 5.30209 5.32392 5.47997 5.58733 5.62375 5.78857 5.97142 6.09144 6.14910 6.31823 6.92354 7.10375 7.69548 8.70272 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.019675 B = 0.002151 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.795948 B =13015.358948 C =14143.742080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.104 3.896 3 H 0.088 0.912 4 C 0.082 3.918 5 H 0.053 0.947 6 C -0.143 4.143 7 O -0.384 6.384 8 C 0.046 3.954 9 C 0.065 3.935 10 N -0.611 5.611 11 C 0.553 3.447 12 O -0.592 6.592 13 C -0.254 4.254 14 C 0.023 3.977 15 C -0.173 4.173 16 C -0.038 4.038 17 C -0.210 4.210 18 C 0.131 3.869 19 O -0.220 6.220 20 C -0.417 4.417 21 H 0.109 0.891 22 C -0.020 4.020 23 N -0.915 5.915 24 Si 1.020 2.980 25 H -0.255 1.255 26 H -0.274 1.274 27 H -0.255 1.255 28 C -0.247 4.247 29 C -0.036 4.036 30 H 0.045 0.955 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.132 0.868 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.151 0.849 41 H 0.126 0.874 42 H 0.152 0.848 43 H 0.119 0.881 44 H 0.275 0.725 45 H 0.130 0.870 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.531 2.243 -25.451 27.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.001 3.999 3 H 0.106 0.894 4 C 0.023 3.977 5 H 0.071 0.929 6 C -0.200 4.200 7 O -0.303 6.303 8 C -0.031 4.031 9 C -0.057 4.057 10 N -0.343 5.343 11 C 0.346 3.654 12 O -0.475 6.475 13 C -0.275 4.275 14 C 0.003 3.997 15 C -0.174 4.174 16 C -0.056 4.056 17 C -0.229 4.229 18 C 0.079 3.921 19 O -0.125 6.125 20 C -0.492 4.492 21 H 0.126 0.874 22 C -0.219 4.219 23 N -0.551 5.551 24 Si 0.838 3.162 25 H -0.179 1.179 26 H -0.199 1.199 27 H -0.180 1.180 28 C -0.266 4.266 29 C -0.054 4.054 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.150 0.850 38 H 0.130 0.870 39 H 0.106 0.894 40 H 0.168 0.832 41 H 0.144 0.856 42 H 0.169 0.831 43 H 0.137 0.863 44 H 0.084 0.916 45 H 0.147 0.853 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.350 2.775 -25.233 27.052 hybrid contribution 0.370 -0.464 0.999 1.162 sum -8.980 2.311 -24.234 25.947 Atomic orbital electron populations 1.22023 0.93029 1.03040 1.02663 1.22026 0.96022 0.97355 0.84516 0.89373 1.22564 0.98396 0.81746 0.94972 0.92928 1.21845 1.02134 1.01188 0.94873 1.87941 1.72248 1.21984 1.48165 1.23135 0.97326 0.98215 0.84417 1.22745 1.03619 0.78697 1.00625 1.48185 1.57590 1.09200 1.19308 1.18580 0.76621 0.86060 0.84106 1.90755 1.57239 1.17605 1.81936 1.22784 1.09616 1.01527 0.93534 1.22205 0.88193 0.99320 0.89946 1.18758 1.09700 0.93661 0.95288 1.21243 0.93673 1.00140 0.90499 1.20386 1.10439 0.91244 1.00814 1.20176 0.92071 0.92896 0.86998 1.83890 1.69767 1.24969 1.33861 1.21893 1.43881 0.82358 1.01074 0.87371 1.26661 0.95926 1.05844 0.93482 1.70150 1.41887 1.39438 1.03669 0.84628 0.79620 0.73482 0.78426 1.17898 1.19879 1.17960 1.21225 1.09283 1.01137 0.94933 1.21324 0.94548 0.93400 0.96120 0.93568 0.89236 0.91468 0.90519 0.89777 0.91050 0.92834 0.85000 0.86986 0.89384 0.83195 0.85596 0.83065 0.86285 0.91625 0.85265 0.83056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.65 71.98 0.62 -1.64 16 2 C 0.10 1.92 2.88 45.11 0.13 2.05 16 3 H 0.09 1.96 7.06 -2.39 -0.02 1.94 16 4 C 0.08 1.28 3.11 30.83 0.10 1.37 16 5 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 6 C -0.14 -1.55 9.03 71.98 0.65 -0.90 16 7 O -0.38 -6.19 10.01 -148.98 -1.49 -7.68 16 8 C 0.05 0.58 6.99 72.08 0.50 1.08 16 9 C 0.07 0.90 6.11 86.36 0.53 1.43 16 10 N -0.61 -12.39 2.71 -797.89 -2.16 -14.55 16 11 C 0.55 14.54 7.62 86.33 0.66 15.19 16 12 O -0.59 -19.84 15.71 -4.43 -0.07 -19.91 16 13 C -0.25 -6.03 8.72 23.61 0.21 -5.83 16 14 C 0.02 0.62 9.45 23.82 0.23 0.85 16 15 C -0.17 -5.31 5.87 -20.13 -0.12 -5.43 16 16 C -0.04 -1.22 9.78 22.55 0.22 -1.00 16 17 C -0.21 -8.49 9.97 22.35 0.22 -8.27 16 18 C 0.13 6.15 6.66 22.72 0.15 6.30 16 19 O -0.22 -12.61 9.74 -20.19 -0.20 -12.81 16 20 C -0.42 -22.94 9.48 67.94 0.64 -22.30 16 21 H 0.11 5.34 5.18 -2.91 -0.02 5.33 16 22 C -0.02 -1.11 5.49 84.86 0.47 -0.64 16 23 N -0.91 -54.12 13.67 21.62 0.30 -53.82 16 24 Si 1.02 40.48 29.55 68.60 2.03 42.50 16 25 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 26 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 27 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 28 C -0.25 -9.84 9.14 22.34 0.20 -9.63 16 29 C -0.04 -1.13 9.40 22.55 0.21 -0.92 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 1.01 6.45 -2.39 -0.02 0.99 16 32 H 0.07 0.98 7.21 -2.38 -0.02 0.97 16 33 H 0.08 0.74 6.38 -2.39 -0.02 0.73 16 34 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.11 1.27 5.50 -2.39 -0.01 1.25 16 39 H 0.09 1.08 7.65 -2.38 -0.02 1.06 16 40 H 0.15 2.77 3.98 -2.91 -0.01 2.75 16 41 H 0.13 3.40 7.53 -2.91 -0.02 3.38 16 42 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 43 H 0.12 4.76 8.06 -2.91 -0.02 4.73 16 44 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 45 H 0.13 5.11 5.61 -2.91 -0.02 5.09 16 46 H 0.15 3.49 6.16 -2.91 -0.02 3.47 16 Total: -1.00 -72.46 373.07 5.03 -67.43 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 1.01 Total: 27.12 kcal Atomic # 6 Polarization: -33.90 SS G_CDS: 5.62 Total: -28.28 kcal Atomic # 7 Polarization: -66.51 SS G_CDS: -1.87 Total: -68.37 kcal Atomic # 8 Polarization: -38.64 SS G_CDS: -1.76 Total: -40.40 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.50 kcal Total: -72.46 5.03 -67.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167382647.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.646 kcal (2) G-P(sol) polarization free energy of solvation -72.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds