Wall clock time and date at job start Tue Mar 31 2020 17:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.51236 * 2 1 4 4 O 1.42957 * 109.51179 * 239.85075 * 2 1 3 5 5 C 1.42970 * 114.16744 * 177.49565 * 4 2 1 6 6 C 1.53292 * 109.22181 * 62.57912 * 5 4 2 7 7 N 1.47158 * 108.38524 * 307.69978 * 6 5 4 8 8 C 1.34777 * 120.97970 * 230.55916 * 7 6 5 9 9 O 1.21728 * 119.99387 * 185.68603 * 8 7 6 10 10 C 1.46251 * 120.00550 * 5.68133 * 8 7 6 11 11 C 1.35018 * 120.00356 * 185.38830 * 10 8 7 12 12 C 1.46961 * 119.99810 * 179.97438 * 11 10 8 13 13 C 1.40021 * 120.10373 * 359.73288 * 12 11 10 14 14 C 1.37600 * 119.89669 * 179.71615 * 13 12 11 15 15 C 1.39182 * 120.09908 * 0.52933 * 14 13 12 16 16 O 1.35567 * 119.89637 * 179.73987 * 15 14 13 17 17 C 1.34779 * 117.00194 * 174.13889 * 16 15 14 18 18 H 1.08007 * 119.99864 * 5.09224 * 17 16 15 19 19 C 1.38721 * 120.00329 * 185.08746 * 17 16 15 20 20 N 1.31503 * 120.00036 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00122 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47402 * 60.00179 * 21 19 17 23 23 H 1.48504 * 109.47460 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47294 * 300.00438 * 21 19 17 25 25 C 1.39172 * 120.20633 * 359.76868 * 15 14 13 26 26 C 1.37603 * 120.10097 * 359.94737 * 25 15 14 27 27 C 1.47153 * 118.03532 * 50.53594 * 7 6 5 28 28 H 1.09001 * 109.68074 * 69.18737 * 27 7 6 29 29 C 1.53001 * 109.71277 * 189.72328 * 27 7 6 30 30 H 1.08997 * 109.46917 * 299.89553 * 1 2 3 31 31 H 1.08991 * 109.47212 * 59.89687 * 1 2 3 32 32 H 1.09002 * 109.46946 * 179.89607 * 1 2 3 33 33 H 1.08994 * 109.51408 * 182.50444 * 5 4 2 34 34 H 1.09000 * 109.50799 * 302.60483 * 5 4 2 35 35 H 1.09001 * 109.68655 * 67.42105 * 6 5 4 36 36 H 1.08996 * 109.68271 * 187.94014 * 6 5 4 37 37 H 1.08003 * 119.99539 * 5.38859 * 10 8 7 38 38 H 1.08003 * 119.99842 * 0.02562 * 11 10 8 39 39 H 1.08003 * 120.04913 * 359.97033 * 13 12 11 40 40 H 1.08000 * 119.94989 * 180.27375 * 14 13 12 41 41 H 0.96999 * 120.00716 * 179.97438 * 20 19 17 42 42 H 1.07995 * 119.95336 * 179.97438 * 25 15 14 43 43 H 1.07995 * 120.05156 * 179.97438 * 26 25 15 44 44 H 1.08996 * 109.46867 * 171.31548 * 29 27 7 45 45 H 1.09000 * 109.46906 * 291.32029 * 29 27 7 46 46 H 1.09003 * 109.46922 * 51.31863 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 8 2.0075 -0.6768 -1.1652 5 6 3.4313 -0.6860 -1.2945 6 6 4.0407 -1.4458 -0.1108 7 7 3.5012 -0.8757 1.1340 8 6 4.3194 -0.5025 2.1378 9 8 3.8513 -0.1302 3.1980 10 6 5.7697 -0.5449 1.9534 11 6 6.5903 -0.2760 2.9913 12 6 8.0476 -0.3192 2.8061 13 6 8.5872 -0.6443 1.5556 14 6 9.9523 -0.6778 1.3855 15 6 10.7962 -0.3998 2.4567 16 8 12.1405 -0.4392 2.2858 17 6 12.9014 -0.0430 3.3253 18 1 12.4388 0.2076 4.2686 19 6 14.2787 0.0427 3.1839 20 7 14.8420 -0.2621 2.0354 21 14 15.3333 0.5910 4.6249 22 1 15.1470 -0.3479 5.7602 23 1 16.7615 0.5995 4.2182 24 1 14.9297 1.9580 5.0418 25 6 10.2644 -0.0823 3.7030 26 6 8.9006 -0.0407 3.8811 27 6 2.0421 -0.7247 1.2500 28 1 1.5758 -1.7074 1.3215 29 6 1.7058 0.0970 2.4961 30 1 -0.3633 0.5122 0.8909 31 1 -0.3633 0.5154 -0.8890 32 1 -0.3633 -1.0277 -0.0019 33 1 3.7091 -1.1795 -2.2258 34 1 3.8029 0.3387 -1.3006 35 1 3.7757 -2.5011 -0.1763 36 1 5.1253 -1.3382 -0.1246 37 1 6.1841 -0.7912 0.9870 38 1 6.1758 -0.0301 3.9579 39 1 7.9331 -0.8645 0.7250 40 1 10.3694 -0.9241 0.4202 41 1 15.8050 -0.2019 1.9363 42 1 10.9231 0.1323 4.5315 43 1 8.4888 0.2054 4.8486 44 1 0.6427 0.3376 2.4966 45 1 1.9481 -0.4804 3.3883 46 1 2.2870 1.0191 2.4910 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167382751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:24 Heat of formation + Delta-G solvation = -48.920424 kcal Electronic energy + Delta-G solvation = -27370.882511 eV Core-core repulsion = 23420.470728 eV Total energy + Delta-G solvation = -3950.411782 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.77220 -39.23969 -38.52572 -36.93708 -34.93648 -34.46176 -33.11891 -32.30360 -30.46988 -29.50369 -29.02903 -27.92025 -25.76273 -25.01058 -23.28041 -23.09775 -22.18918 -21.34007 -20.08766 -18.78333 -18.04496 -17.38717 -17.17569 -16.69299 -16.26078 -15.84182 -15.23200 -15.11040 -14.81174 -14.71731 -14.35221 -14.14551 -13.86802 -13.53109 -13.46130 -13.29671 -13.06393 -12.95144 -12.66089 -12.41665 -12.21261 -12.11508 -11.89378 -11.80684 -11.79651 -11.50305 -11.32818 -11.12769 -11.08552 -11.00111 -10.71146 -10.56653 -10.41691 -9.62620 -9.53302 -9.12713 -8.90175 -8.63069 -8.41985 -7.15065 -6.67780 -4.22680 1.02317 2.09982 2.50868 2.76490 3.02233 3.03712 3.06303 3.37673 3.49851 3.80033 4.29795 4.47291 4.51147 4.62894 4.70173 4.79583 4.88951 4.89266 4.94393 5.03830 5.09422 5.19032 5.23639 5.28050 5.39289 5.47504 5.49614 5.55516 5.58469 5.62800 5.64028 5.77827 5.95697 5.97536 6.07836 6.12532 6.41070 6.43841 6.50624 6.57144 6.75454 6.81627 6.88153 7.09170 7.19954 7.23800 7.36326 7.60286 7.77243 8.26026 8.76721 9.43280 10.48625 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.031060 B = 0.001960 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.252447 B =14284.510311 C =15020.196219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.076 3.924 3 H 0.063 0.937 4 O -0.379 6.379 5 C 0.047 3.953 6 C 0.072 3.928 7 N -0.618 5.618 8 C 0.561 3.439 9 O -0.548 6.548 10 C -0.289 4.289 11 C 0.042 3.958 12 C -0.200 4.200 13 C -0.043 4.043 14 C -0.199 4.199 15 C 0.167 3.833 16 O -0.161 6.161 17 C -0.394 4.394 18 H 0.097 0.903 19 C 0.042 3.958 20 N -0.851 5.851 21 Si 0.945 3.055 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.267 1.267 25 C -0.242 4.242 26 C -0.034 4.034 27 C 0.118 3.882 28 H 0.075 0.925 29 C -0.138 4.138 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.275 0.725 42 H 0.131 0.869 43 H 0.114 0.886 44 H 0.048 0.952 45 H 0.083 0.917 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.884 -0.488 -3.952 22.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.017 3.983 3 H 0.081 0.919 4 O -0.298 6.298 5 C -0.031 4.031 6 C -0.051 4.051 7 N -0.352 5.352 8 C 0.355 3.645 9 O -0.429 6.429 10 C -0.310 4.310 11 C 0.022 3.978 12 C -0.201 4.201 13 C -0.061 4.061 14 C -0.219 4.219 15 C 0.110 3.890 16 O -0.062 6.062 17 C -0.469 4.469 18 H 0.114 0.886 19 C -0.165 4.165 20 N -0.484 5.484 21 Si 0.769 3.231 22 H -0.192 1.192 23 H -0.201 1.201 24 H -0.192 1.192 25 C -0.261 4.261 26 C -0.052 4.052 27 C 0.014 3.986 28 H 0.093 0.907 29 C -0.195 4.195 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.125 0.875 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.120 0.880 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.134 0.866 40 H 0.139 0.861 41 H 0.085 0.915 42 H 0.149 0.851 43 H 0.132 0.868 44 H 0.066 0.934 45 H 0.101 0.899 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.814 -0.463 -3.831 22.152 hybrid contribution 0.866 0.270 0.698 1.144 sum -20.948 -0.192 -3.133 21.182 Atomic orbital electron populations 1.21793 0.92279 1.03209 1.02881 1.22572 0.95562 0.95364 0.84770 0.91941 1.87948 1.20944 1.77487 1.43396 1.22999 0.81241 1.00438 0.98387 1.22499 1.00561 0.98204 0.83846 1.48050 1.06154 1.64244 1.16798 1.18380 0.87312 0.76145 0.82662 1.90801 1.76930 1.48696 1.26476 1.22532 0.91476 1.15958 1.01035 1.22292 0.91766 0.86038 0.97721 1.18455 0.91446 1.15135 0.95081 1.20850 0.93796 0.95766 0.95675 1.20149 0.92193 1.11359 0.98154 1.19610 0.84910 0.91503 0.92952 1.83899 1.11524 1.70524 1.40254 1.21433 0.88252 1.46051 0.91167 0.88571 1.25399 0.96174 0.96366 0.98517 1.69997 1.11996 1.42660 1.23723 0.85710 0.78459 0.79503 0.79446 1.19236 1.20060 1.19232 1.21100 0.95252 1.11547 0.98234 1.20990 0.92764 0.94481 0.97011 1.21919 0.80261 0.99970 0.96408 0.90685 1.22170 0.99376 1.01090 0.96880 0.90480 0.91511 0.91598 0.87508 0.92469 0.90597 0.87977 0.85802 0.85947 0.86593 0.86110 0.91504 0.85109 0.86811 0.93375 0.89866 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.38 37.16 0.35 -0.66 16 2 C 0.08 0.70 2.85 -26.58 -0.08 0.62 16 3 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 4 O -0.38 -3.77 10.38 -35.23 -0.37 -4.14 16 5 C 0.05 0.38 6.99 37.31 0.26 0.64 16 6 C 0.07 0.64 6.56 -3.53 -0.02 0.61 16 7 N -0.62 -7.12 3.02 -166.43 -0.50 -7.62 16 8 C 0.56 7.87 7.39 -13.04 -0.10 7.77 16 9 O -0.55 -8.97 12.02 5.16 0.06 -8.91 16 10 C -0.29 -3.91 8.74 -37.51 -0.33 -4.24 16 11 C 0.04 0.62 9.45 -37.19 -0.35 0.27 16 12 C -0.20 -3.34 5.87 -105.02 -0.62 -3.96 16 13 C -0.04 -0.71 9.40 -39.15 -0.37 -1.08 16 14 C -0.20 -3.91 9.97 -39.46 -0.39 -4.30 16 15 C 0.17 3.78 6.66 -38.88 -0.26 3.52 16 16 O -0.16 -4.33 9.74 0.75 0.01 -4.32 16 17 C -0.39 -10.35 9.48 30.91 0.29 -10.06 16 18 H 0.10 2.32 5.18 -52.48 -0.27 2.04 16 19 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 20 N -0.85 -23.61 13.67 55.48 0.76 -22.86 16 21 Si 0.95 19.34 29.55 -169.99 -5.02 14.32 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 23 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 24 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 25 C -0.24 -4.94 9.14 -39.47 -0.36 -5.30 16 26 C -0.03 -0.60 9.79 -39.14 -0.38 -0.98 16 27 C 0.12 1.23 3.12 -67.42 -0.21 1.02 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 29 C -0.14 -1.51 7.58 37.16 0.28 -1.23 16 30 H 0.08 0.45 6.55 -51.93 -0.34 0.11 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.10 0.81 5.40 -51.93 -0.28 0.53 16 37 H 0.12 1.44 3.92 -52.48 -0.21 1.24 16 38 H 0.12 1.81 7.53 -52.48 -0.40 1.41 16 39 H 0.12 1.55 6.16 -52.48 -0.32 1.23 16 40 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 41 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.13 2.64 5.62 -52.49 -0.29 2.34 16 43 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.05 0.40 6.41 -51.93 -0.33 0.07 16 45 H 0.08 1.08 6.60 -51.93 -0.34 0.73 16 46 H 0.06 0.83 6.99 -51.93 -0.36 0.47 16 LS Contribution 369.36 15.07 5.57 5.57 Total: -1.00 -30.35 369.36 -7.97 -38.31 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.09 Total: 6.00 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -2.38 Total: -16.35 kcal Atomic # 7 Polarization: -30.73 SS G_CDS: 0.26 Total: -30.47 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.30 Total: -17.37 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.32 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.35 -7.97 -38.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167382751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.609 kcal (2) G-P(sol) polarization free energy of solvation -30.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds