Wall clock time and date at job start Tue Mar 31 2020 17:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.51236 * 2 1 4 4 O 1.42957 * 109.51179 * 239.85075 * 2 1 3 5 5 C 1.42970 * 114.16744 * 177.49565 * 4 2 1 6 6 C 1.53292 * 109.22181 * 62.57912 * 5 4 2 7 7 N 1.47158 * 108.38524 * 307.69978 * 6 5 4 8 8 C 1.34777 * 120.97970 * 230.55916 * 7 6 5 9 9 O 1.21728 * 119.99387 * 185.68603 * 8 7 6 10 10 C 1.46251 * 120.00550 * 5.68133 * 8 7 6 11 11 C 1.35018 * 120.00356 * 185.38830 * 10 8 7 12 12 C 1.46961 * 119.99810 * 179.97438 * 11 10 8 13 13 C 1.40021 * 120.10373 * 359.73288 * 12 11 10 14 14 C 1.37600 * 119.89669 * 179.71615 * 13 12 11 15 15 C 1.39182 * 120.09908 * 0.52933 * 14 13 12 16 16 O 1.35567 * 119.89637 * 179.73987 * 15 14 13 17 17 C 1.34779 * 117.00194 * 174.13889 * 16 15 14 18 18 H 1.08007 * 119.99864 * 5.09224 * 17 16 15 19 19 C 1.38721 * 120.00329 * 185.08746 * 17 16 15 20 20 N 1.31503 * 120.00036 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00122 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47402 * 60.00179 * 21 19 17 23 23 H 1.48504 * 109.47460 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47294 * 300.00438 * 21 19 17 25 25 C 1.39172 * 120.20633 * 359.76868 * 15 14 13 26 26 C 1.37603 * 120.10097 * 359.94737 * 25 15 14 27 27 C 1.47153 * 118.03532 * 50.53594 * 7 6 5 28 28 H 1.09001 * 109.68074 * 69.18737 * 27 7 6 29 29 C 1.53001 * 109.71277 * 189.72328 * 27 7 6 30 30 H 1.08997 * 109.46917 * 299.89553 * 1 2 3 31 31 H 1.08991 * 109.47212 * 59.89687 * 1 2 3 32 32 H 1.09002 * 109.46946 * 179.89607 * 1 2 3 33 33 H 1.08994 * 109.51408 * 182.50444 * 5 4 2 34 34 H 1.09000 * 109.50799 * 302.60483 * 5 4 2 35 35 H 1.09001 * 109.68655 * 67.42105 * 6 5 4 36 36 H 1.08996 * 109.68271 * 187.94014 * 6 5 4 37 37 H 1.08003 * 119.99539 * 5.38859 * 10 8 7 38 38 H 1.08003 * 119.99842 * 0.02562 * 11 10 8 39 39 H 1.08003 * 120.04913 * 359.97033 * 13 12 11 40 40 H 1.08000 * 119.94989 * 180.27375 * 14 13 12 41 41 H 0.96999 * 120.00716 * 179.97438 * 20 19 17 42 42 H 1.07995 * 119.95336 * 179.97438 * 25 15 14 43 43 H 1.07995 * 120.05156 * 179.97438 * 26 25 15 44 44 H 1.08996 * 109.46867 * 171.31548 * 29 27 7 45 45 H 1.09000 * 109.46906 * 291.32029 * 29 27 7 46 46 H 1.09003 * 109.46922 * 51.31863 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 8 2.0075 -0.6768 -1.1652 5 6 3.4313 -0.6860 -1.2945 6 6 4.0407 -1.4458 -0.1108 7 7 3.5012 -0.8757 1.1340 8 6 4.3194 -0.5025 2.1378 9 8 3.8513 -0.1302 3.1980 10 6 5.7697 -0.5449 1.9534 11 6 6.5903 -0.2760 2.9913 12 6 8.0476 -0.3192 2.8061 13 6 8.5872 -0.6443 1.5556 14 6 9.9523 -0.6778 1.3855 15 6 10.7962 -0.3998 2.4567 16 8 12.1405 -0.4392 2.2858 17 6 12.9014 -0.0430 3.3253 18 1 12.4388 0.2076 4.2686 19 6 14.2787 0.0427 3.1839 20 7 14.8420 -0.2621 2.0354 21 14 15.3333 0.5910 4.6249 22 1 15.1470 -0.3479 5.7602 23 1 16.7615 0.5995 4.2182 24 1 14.9297 1.9580 5.0418 25 6 10.2644 -0.0823 3.7030 26 6 8.9006 -0.0407 3.8811 27 6 2.0421 -0.7247 1.2500 28 1 1.5758 -1.7074 1.3215 29 6 1.7058 0.0970 2.4961 30 1 -0.3633 0.5122 0.8909 31 1 -0.3633 0.5154 -0.8890 32 1 -0.3633 -1.0277 -0.0019 33 1 3.7091 -1.1795 -2.2258 34 1 3.8029 0.3387 -1.3006 35 1 3.7757 -2.5011 -0.1763 36 1 5.1253 -1.3382 -0.1246 37 1 6.1841 -0.7912 0.9870 38 1 6.1758 -0.0301 3.9579 39 1 7.9331 -0.8645 0.7250 40 1 10.3694 -0.9241 0.4202 41 1 15.8050 -0.2019 1.9363 42 1 10.9231 0.1323 4.5315 43 1 8.4888 0.2054 4.8486 44 1 0.6427 0.3376 2.4966 45 1 1.9481 -0.4804 3.3883 46 1 2.2870 1.0191 2.4910 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167382751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:23 Heat of formation + Delta-G solvation = -66.877779 kcal Electronic energy + Delta-G solvation = -27371.661200 eV Core-core repulsion = 23420.470728 eV Total energy + Delta-G solvation = -3951.190472 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.69945 -40.83490 -39.48894 -38.49288 -35.86267 -35.34842 -34.56959 -33.88002 -31.97941 -30.46859 -29.79782 -29.16322 -27.51405 -25.98637 -24.39880 -23.92782 -23.65633 -22.41553 -21.26515 -20.18292 -19.39951 -18.82938 -18.37512 -17.57655 -17.19783 -16.72398 -16.47942 -16.42237 -16.02934 -15.86603 -15.62723 -15.55139 -15.34030 -14.81339 -14.61988 -14.46196 -14.11595 -13.97573 -13.71594 -13.60649 -13.35038 -13.30805 -13.05594 -12.88236 -12.69415 -12.68242 -12.54462 -12.44997 -12.18495 -12.11495 -12.05749 -11.72723 -11.22384 -11.19262 -11.10957 -10.57064 -10.18351 -9.90252 -9.53744 -8.69136 -8.52501 -6.18668 -0.27116 0.57628 1.11535 1.35570 1.46777 1.51185 1.86291 2.15026 2.31045 2.73237 2.85452 3.16786 3.41289 3.49552 3.61448 3.87178 3.90085 3.97488 4.01914 4.06765 4.13840 4.22332 4.27393 4.34810 4.40670 4.45166 4.47988 4.65157 4.68828 4.76514 4.84832 4.91025 4.93477 4.96059 5.01633 5.05634 5.13154 5.18369 5.25176 5.32512 5.40768 5.53515 5.60044 5.63247 5.79479 5.96612 6.09198 6.14064 6.36015 6.91676 7.17471 7.68507 8.69165 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.031060 B = 0.001960 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.252447 B =14284.510311 C =15020.196219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.079 3.921 3 H 0.056 0.944 4 O -0.390 6.390 5 C 0.045 3.955 6 C 0.066 3.934 7 N -0.615 5.615 8 C 0.551 3.449 9 O -0.575 6.575 10 C -0.254 4.254 11 C 0.021 3.979 12 C -0.172 4.172 13 C -0.037 4.037 14 C -0.206 4.206 15 C 0.130 3.870 16 O -0.219 6.219 17 C -0.417 4.417 18 H 0.105 0.895 19 C -0.018 4.018 20 N -0.913 5.913 21 Si 1.018 2.982 22 H -0.257 1.257 23 H -0.271 1.271 24 H -0.257 1.257 25 C -0.249 4.249 26 C -0.039 4.039 27 C 0.114 3.886 28 H 0.081 0.919 29 C -0.129 4.129 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.132 0.868 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.115 0.885 37 H 0.150 0.850 38 H 0.125 0.875 39 H 0.159 0.841 40 H 0.124 0.876 41 H 0.275 0.725 42 H 0.125 0.875 43 H 0.144 0.856 44 H 0.073 0.927 45 H 0.060 0.940 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.486 -0.573 -4.269 25.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.020 3.980 3 H 0.074 0.926 4 O -0.309 6.309 5 C -0.032 4.032 6 C -0.056 4.056 7 N -0.348 5.348 8 C 0.344 3.656 9 O -0.457 6.457 10 C -0.274 4.274 11 C 0.001 3.999 12 C -0.173 4.173 13 C -0.054 4.054 14 C -0.225 4.225 15 C 0.078 3.922 16 O -0.124 6.124 17 C -0.493 4.493 18 H 0.123 0.877 19 C -0.217 4.217 20 N -0.549 5.549 21 Si 0.837 3.163 22 H -0.181 1.181 23 H -0.196 1.196 24 H -0.182 1.182 25 C -0.268 4.268 26 C -0.057 4.057 27 C 0.011 3.989 28 H 0.099 0.901 29 C -0.187 4.187 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.150 0.850 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.133 0.867 37 H 0.167 0.833 38 H 0.143 0.857 39 H 0.176 0.824 40 H 0.142 0.858 41 H 0.084 0.916 42 H 0.142 0.858 43 H 0.162 0.838 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -25.507 -0.559 -4.165 25.850 hybrid contribution 1.276 0.245 0.681 1.467 sum -24.230 -0.314 -3.484 24.481 Atomic orbital electron populations 1.21811 0.90639 1.03706 1.03738 1.22580 0.96853 0.94610 0.83934 0.92636 1.87950 1.22001 1.77512 1.43482 1.23158 0.80360 1.00608 0.99102 1.22760 1.01327 0.98798 0.82744 1.48174 1.06623 1.62997 1.17015 1.18527 0.87730 0.76399 0.82896 1.90818 1.77396 1.49797 1.27712 1.22847 0.91338 1.11706 1.01508 1.22172 0.90512 0.88504 0.98681 1.18772 0.92474 1.11407 0.94611 1.21257 0.92886 0.94312 0.96989 1.20424 0.93305 1.11108 0.97696 1.20195 0.84361 0.92828 0.94824 1.83882 1.13233 1.74172 1.41073 1.21853 0.88973 1.46763 0.91717 0.87732 1.26604 0.97273 0.96368 1.01473 1.70134 1.12160 1.46305 1.26342 0.84655 0.76387 0.79421 0.75862 1.18112 1.19596 1.18175 1.21204 0.96602 1.11646 0.97394 1.21314 0.91552 0.94001 0.98878 1.22053 0.79683 1.00342 0.96835 0.90131 1.22021 1.00680 0.99726 0.96233 0.89350 0.90982 0.91262 0.85046 0.92606 0.89502 0.86710 0.83260 0.85688 0.82372 0.85820 0.91573 0.85756 0.83837 0.90815 0.92097 0.93665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.38 71.98 0.68 -0.89 16 2 C 0.08 1.23 2.85 30.69 0.09 1.32 16 3 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 4 O -0.39 -6.50 10.38 -148.98 -1.55 -8.05 16 5 C 0.04 0.56 6.99 72.08 0.50 1.06 16 6 C 0.07 0.89 6.56 86.35 0.57 1.45 16 7 N -0.61 -12.17 3.02 -798.66 -2.41 -14.58 16 8 C 0.55 13.78 7.39 86.32 0.64 14.42 16 9 O -0.57 -17.69 12.02 -4.44 -0.05 -17.74 16 10 C -0.25 -5.79 8.74 23.61 0.21 -5.58 16 11 C 0.02 0.55 9.45 23.82 0.23 0.78 16 12 C -0.17 -5.23 5.87 -20.12 -0.12 -5.34 16 13 C -0.04 -1.11 9.40 22.55 0.21 -0.90 16 14 C -0.21 -8.04 9.97 22.35 0.22 -7.82 16 15 C 0.13 6.12 6.66 22.72 0.15 6.27 16 16 O -0.22 -12.54 9.74 -20.21 -0.20 -12.73 16 17 C -0.42 -23.30 9.48 67.94 0.64 -22.65 16 18 H 0.11 5.32 5.18 -2.91 -0.02 5.31 16 19 C -0.02 -1.00 5.49 84.86 0.47 -0.53 16 20 N -0.91 -53.97 13.67 21.62 0.30 -53.67 16 21 Si 1.02 41.19 29.55 68.60 2.03 43.22 16 22 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 23 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 24 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 25 C -0.25 -10.32 9.14 22.34 0.20 -10.11 16 26 C -0.04 -1.32 9.79 22.55 0.22 -1.10 16 27 C 0.11 2.07 3.12 44.97 0.14 2.21 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 29 C -0.13 -2.59 7.58 71.98 0.55 -2.05 16 30 H 0.09 0.76 6.55 -2.39 -0.02 0.74 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.11 1.22 5.40 -2.39 -0.01 1.21 16 37 H 0.15 2.61 3.92 -2.91 -0.01 2.59 16 38 H 0.13 3.32 7.53 -2.91 -0.02 3.30 16 39 H 0.16 3.40 6.16 -2.91 -0.02 3.38 16 40 H 0.12 4.66 8.06 -2.91 -0.02 4.63 16 41 H 0.28 14.92 8.31 -92.71 -0.77 14.15 16 42 H 0.12 5.21 5.62 -2.91 -0.02 5.19 16 43 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 44 H 0.07 1.06 6.41 -2.39 -0.02 1.04 16 45 H 0.06 1.50 6.60 -2.39 -0.02 1.49 16 46 H 0.04 1.09 6.99 -2.39 -0.02 1.07 16 Total: -1.00 -71.37 369.36 4.71 -66.65 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 1.01 Total: 26.37 kcal Atomic # 6 Polarization: -35.06 SS G_CDS: 5.59 Total: -29.46 kcal Atomic # 7 Polarization: -66.14 SS G_CDS: -2.12 Total: -68.25 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -1.80 Total: -38.53 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -71.37 4.71 -66.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167382751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.224 kcal (2) G-P(sol) polarization free energy of solvation -71.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds