Wall clock time and date at job start Tue Mar 31 2020 17:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.50953 * 2 1 4 4 O 1.42955 * 109.51449 * 120.15361 * 2 1 3 5 5 C 1.42968 * 114.16818 * 182.50694 * 4 2 1 6 6 C 1.53292 * 109.21941 * 297.41775 * 5 4 2 7 7 N 1.47157 * 108.38336 * 52.30451 * 6 5 4 8 8 C 1.34777 * 120.98216 * 129.44495 * 7 6 5 9 9 O 1.21723 * 119.99802 * 184.78490 * 8 7 6 10 10 C 1.46249 * 120.00127 * 4.78134 * 8 7 6 11 11 C 1.35023 * 120.00193 * 185.53981 * 10 8 7 12 12 C 1.46963 * 120.00132 * 180.02562 * 11 10 8 13 13 C 1.40023 * 120.10181 * 359.72695 * 12 11 10 14 14 C 1.37595 * 119.89768 * 179.70146 * 13 12 11 15 15 C 1.39176 * 120.09881 * 0.59313 * 14 13 12 16 16 O 1.35576 * 119.89573 * 179.70045 * 15 14 13 17 17 C 1.34782 * 116.99725 * 174.47288 * 16 15 14 18 18 H 1.08001 * 120.00126 * 5.09104 * 17 16 15 19 19 C 1.38723 * 119.99843 * 185.08354 * 17 16 15 20 20 N 1.31507 * 119.99898 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00001 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46844 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.46757 * 120.00077 * 21 19 17 24 24 H 1.48500 * 109.47109 * 240.00203 * 21 19 17 25 25 C 1.39170 * 120.20546 * 359.68267 * 15 14 13 26 26 C 1.37596 * 120.10022 * 0.02562 * 25 15 14 27 27 C 1.47149 * 118.03610 * 309.45789 * 7 6 5 28 28 H 1.09003 * 109.68620 * 290.81757 * 27 7 6 29 29 C 1.53001 * 109.68222 * 170.25941 * 27 7 6 30 30 H 1.09004 * 109.47010 * 180.10048 * 1 2 3 31 31 H 1.09008 * 109.46999 * 300.09797 * 1 2 3 32 32 H 1.08998 * 109.47116 * 60.09888 * 1 2 3 33 33 H 1.08993 * 109.50967 * 177.49529 * 5 4 2 34 34 H 1.09001 * 109.51133 * 57.34471 * 5 4 2 35 35 H 1.09000 * 109.68602 * 292.57964 * 6 5 4 36 36 H 1.09005 * 109.71289 * 172.03801 * 6 5 4 37 37 H 1.08002 * 120.00281 * 5.54096 * 10 8 7 38 38 H 1.07999 * 120.00037 * 0.02562 * 11 10 8 39 39 H 1.07997 * 120.04913 * 359.97438 * 13 12 11 40 40 H 1.08004 * 119.94872 * 180.27905 * 14 13 12 41 41 H 0.97005 * 119.99749 * 179.97438 * 20 19 17 42 42 H 1.07998 * 119.94933 * 180.02562 * 25 15 14 43 43 H 1.08001 * 120.05094 * 179.97438 * 26 25 15 44 44 H 1.08996 * 109.47230 * 305.85476 * 29 27 7 45 45 H 1.09001 * 109.46933 * 65.85325 * 29 27 7 46 46 H 1.08999 * 109.46661 * 185.85159 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 8 2.0076 -0.6768 1.1651 5 6 3.4314 -0.6860 1.2944 6 6 4.0407 -1.4458 0.1107 7 7 3.5012 -0.8755 -1.1340 8 6 4.3193 -0.5023 -2.1379 9 8 3.8622 0.0471 -3.1233 10 6 5.7563 -0.7572 -2.0434 11 6 6.5898 -0.2851 -2.9949 12 6 8.0338 -0.5418 -2.9002 13 6 8.5481 -1.2708 -1.8210 14 6 9.9000 -1.5139 -1.7397 15 6 10.7572 -1.0259 -2.7215 16 8 12.0893 -1.2627 -2.6341 17 6 12.8510 -0.8638 -3.6720 18 1 12.4080 -0.3070 -4.4844 19 6 14.2042 -1.1683 -3.6965 20 7 14.7436 -1.8466 -2.7074 21 14 15.2602 -0.6148 -5.1346 22 1 14.4200 0.1267 -6.1091 23 1 16.3439 0.2720 -4.6405 24 1 15.8560 -1.8027 -5.7973 25 6 10.2513 -0.2959 -3.7929 26 6 8.9001 -0.0529 -3.8856 27 6 2.0421 -0.7246 -1.2501 28 1 1.5758 -1.7072 -1.3216 29 6 1.7066 0.0977 -2.4960 30 1 -0.3633 -1.0277 0.0018 31 1 -0.3633 0.5154 0.8892 32 1 -0.3633 0.5123 -0.8908 33 1 3.7091 -1.1795 2.2256 34 1 3.8030 0.3387 1.2996 35 1 3.7757 -2.5010 0.1761 36 1 5.1253 -1.3381 0.1238 37 1 6.1509 -1.3232 -1.2124 38 1 6.1954 0.2812 -3.8257 39 1 7.8843 -1.6455 -1.0560 40 1 10.2971 -2.0800 -0.9100 41 1 15.6898 -2.0598 -2.7248 42 1 10.9202 0.0806 -4.5527 43 1 8.5083 0.5140 -4.7172 44 1 2.2499 1.0420 -2.4653 45 1 1.9957 -0.4590 -3.3874 46 1 0.6350 0.2957 -2.5229 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167382864.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:27 Heat of formation + Delta-G solvation = -48.425649 kcal Electronic energy + Delta-G solvation = -27356.298424 eV Core-core repulsion = 23405.908097 eV Total energy + Delta-G solvation = -3950.390327 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.77908 -39.24072 -38.52704 -36.93782 -34.93568 -34.45978 -33.11845 -32.30378 -30.47070 -29.51107 -29.03702 -27.90659 -25.76073 -25.00193 -23.28688 -23.08541 -22.18806 -21.35015 -20.12343 -18.77140 -18.03671 -17.36305 -17.17797 -16.70296 -16.21325 -15.86244 -15.23643 -15.11103 -14.86166 -14.70134 -14.35973 -14.11803 -13.86003 -13.49796 -13.46292 -13.29313 -13.06387 -12.99586 -12.64008 -12.40744 -12.20279 -12.16455 -11.90836 -11.81594 -11.78653 -11.52287 -11.33776 -11.16752 -11.07979 -10.97389 -10.67041 -10.55301 -10.40983 -9.63038 -9.52681 -9.10811 -8.90724 -8.61119 -8.42048 -7.15095 -6.68253 -4.22945 1.02127 2.09949 2.50602 2.76109 3.01432 3.02769 3.08590 3.37781 3.50119 3.79665 4.29577 4.47293 4.50689 4.63612 4.71285 4.80451 4.88831 4.89571 4.95483 5.03506 5.09184 5.19445 5.23849 5.27874 5.40031 5.47394 5.49460 5.55435 5.58898 5.63229 5.63283 5.77430 5.97236 5.97828 6.07897 6.12293 6.41465 6.44220 6.50779 6.57460 6.75415 6.81709 6.88559 7.09397 7.19895 7.23827 7.36075 7.60258 7.77199 8.25802 8.76640 9.43291 10.48352 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.032467 B = 0.001943 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.216464 B =14405.854028 C =15128.240167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.076 3.924 3 H 0.063 0.937 4 O -0.379 6.379 5 C 0.048 3.952 6 C 0.072 3.928 7 N -0.618 5.618 8 C 0.560 3.440 9 O -0.548 6.548 10 C -0.289 4.289 11 C 0.041 3.959 12 C -0.200 4.200 13 C -0.043 4.043 14 C -0.199 4.199 15 C 0.167 3.833 16 O -0.162 6.162 17 C -0.393 4.393 18 H 0.098 0.902 19 C 0.041 3.959 20 N -0.851 5.851 21 Si 0.945 3.055 22 H -0.264 1.264 23 H -0.274 1.274 24 H -0.273 1.273 25 C -0.242 4.242 26 C -0.034 4.034 27 C 0.117 3.883 28 H 0.075 0.925 29 C -0.135 4.135 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.274 0.726 42 H 0.131 0.869 43 H 0.114 0.886 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.746 2.229 5.102 22.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.017 3.983 3 H 0.081 0.919 4 O -0.298 6.298 5 C -0.030 4.030 6 C -0.051 4.051 7 N -0.352 5.352 8 C 0.355 3.645 9 O -0.429 6.429 10 C -0.310 4.310 11 C 0.022 3.978 12 C -0.201 4.201 13 C -0.061 4.061 14 C -0.219 4.219 15 C 0.110 3.890 16 O -0.063 6.063 17 C -0.468 4.468 18 H 0.115 0.885 19 C -0.165 4.165 20 N -0.484 5.484 21 Si 0.769 3.231 22 H -0.188 1.188 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.261 4.261 26 C -0.053 4.053 27 C 0.014 3.986 28 H 0.093 0.907 29 C -0.192 4.192 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.125 0.875 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.120 0.880 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.134 0.866 40 H 0.139 0.861 41 H 0.084 0.916 42 H 0.149 0.851 43 H 0.132 0.868 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -21.685 2.221 4.961 22.356 hybrid contribution 0.873 0.233 -0.703 1.145 sum -20.812 2.454 4.258 21.384 Atomic orbital electron populations 1.21791 0.92296 1.03194 1.02874 1.22579 0.95555 0.95370 0.84782 0.91940 1.87946 1.20934 1.77488 1.43427 1.22988 0.81229 1.00404 0.98348 1.22490 1.00502 0.98243 0.83840 1.48029 1.06181 1.64286 1.16726 1.18393 0.87087 0.77323 0.81714 1.90814 1.76734 1.43317 1.32033 1.22538 0.91776 1.12188 1.04472 1.22293 0.91602 0.89443 0.94498 1.18455 0.91786 1.10097 0.99761 1.20853 0.93963 0.95288 0.95982 1.20149 0.92285 1.07976 1.01442 1.19611 0.84891 0.91571 0.92880 1.83905 1.12414 1.68493 1.41452 1.21533 0.90183 1.35765 0.99352 0.88457 1.25408 0.96312 0.96056 0.98729 1.70022 1.13349 1.34653 1.30340 0.85576 0.79433 0.78692 0.79377 1.18846 1.19903 1.19883 1.21103 0.95659 1.07407 1.01961 1.20986 0.92693 0.95403 0.96171 1.21942 0.80208 0.99936 0.96514 0.90683 1.22186 0.99166 1.01389 0.96487 0.91609 0.91531 0.90482 0.87484 0.92520 0.90631 0.88013 0.85809 0.85957 0.86571 0.86107 0.91612 0.85095 0.86816 0.91141 0.90322 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.38 37.16 0.35 -0.66 16 2 C 0.08 0.70 2.85 -26.58 -0.08 0.62 16 3 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 4 O -0.38 -3.78 10.38 -35.23 -0.37 -4.14 16 5 C 0.05 0.39 6.99 37.31 0.26 0.65 16 6 C 0.07 0.64 6.49 -3.53 -0.02 0.61 16 7 N -0.62 -7.09 3.02 -166.43 -0.50 -7.60 16 8 C 0.56 7.84 7.53 -13.04 -0.10 7.74 16 9 O -0.55 -8.92 11.79 5.17 0.06 -8.86 16 10 C -0.29 -3.90 8.63 -37.51 -0.32 -4.23 16 11 C 0.04 0.62 9.45 -37.19 -0.35 0.26 16 12 C -0.20 -3.34 5.87 -105.03 -0.62 -3.95 16 13 C -0.04 -0.71 9.40 -39.15 -0.37 -1.08 16 14 C -0.20 -3.91 9.97 -39.47 -0.39 -4.30 16 15 C 0.17 3.79 6.66 -38.89 -0.26 3.53 16 16 O -0.16 -4.34 9.74 0.72 0.01 -4.34 16 17 C -0.39 -10.34 9.48 30.91 0.29 -10.05 16 18 H 0.10 2.36 5.18 -52.49 -0.27 2.09 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 20 N -0.85 -23.63 13.67 55.48 0.76 -22.87 16 21 Si 0.95 19.37 29.55 -169.99 -5.02 14.35 16 22 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 25 C -0.24 -4.94 9.14 -39.47 -0.36 -5.30 16 26 C -0.03 -0.60 9.78 -39.15 -0.38 -0.98 16 27 C 0.12 1.22 3.12 -67.42 -0.21 1.01 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 C -0.14 -1.48 7.52 37.16 0.28 -1.20 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.44 8.14 -51.92 -0.42 0.01 16 32 H 0.08 0.45 6.61 -51.93 -0.34 0.11 16 33 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 0.81 5.57 -51.93 -0.29 0.52 16 37 H 0.12 1.45 4.12 -52.49 -0.22 1.23 16 38 H 0.12 1.80 7.53 -52.49 -0.40 1.41 16 39 H 0.12 1.56 6.16 -52.49 -0.32 1.24 16 40 H 0.12 2.25 8.06 -52.48 -0.42 1.83 16 41 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 42 H 0.13 2.65 5.62 -52.49 -0.29 2.36 16 43 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.07 0.90 6.88 -51.93 -0.36 0.54 16 45 H 0.08 1.02 6.69 -51.93 -0.35 0.67 16 46 H 0.05 0.39 6.51 -51.93 -0.34 0.05 16 LS Contribution 369.52 15.07 5.57 5.57 Total: -1.00 -30.34 369.52 -7.99 -38.33 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.12 Total: 5.91 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -2.38 Total: -16.35 kcal Atomic # 7 Polarization: -30.72 SS G_CDS: 0.26 Total: -30.46 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.30 Total: -17.34 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.34 -7.99 -38.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167382864.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.095 kcal (2) G-P(sol) polarization free energy of solvation -30.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds