Wall clock time and date at job start Tue Mar 31 2020 17:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.50953 * 2 1 4 4 O 1.42955 * 109.51449 * 120.15361 * 2 1 3 5 5 C 1.42968 * 114.16818 * 182.50694 * 4 2 1 6 6 C 1.53292 * 109.21941 * 297.41775 * 5 4 2 7 7 N 1.47157 * 108.38336 * 52.30451 * 6 5 4 8 8 C 1.34777 * 120.98216 * 129.44495 * 7 6 5 9 9 O 1.21723 * 119.99802 * 184.78490 * 8 7 6 10 10 C 1.46249 * 120.00127 * 4.78134 * 8 7 6 11 11 C 1.35023 * 120.00193 * 185.53981 * 10 8 7 12 12 C 1.46963 * 120.00132 * 180.02562 * 11 10 8 13 13 C 1.40023 * 120.10181 * 359.72695 * 12 11 10 14 14 C 1.37595 * 119.89768 * 179.70146 * 13 12 11 15 15 C 1.39176 * 120.09881 * 0.59313 * 14 13 12 16 16 O 1.35576 * 119.89573 * 179.70045 * 15 14 13 17 17 C 1.34782 * 116.99725 * 174.47288 * 16 15 14 18 18 H 1.08001 * 120.00126 * 5.09104 * 17 16 15 19 19 C 1.38723 * 119.99843 * 185.08354 * 17 16 15 20 20 N 1.31507 * 119.99898 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00001 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46844 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.46757 * 120.00077 * 21 19 17 24 24 H 1.48500 * 109.47109 * 240.00203 * 21 19 17 25 25 C 1.39170 * 120.20546 * 359.68267 * 15 14 13 26 26 C 1.37596 * 120.10022 * 0.02562 * 25 15 14 27 27 C 1.47149 * 118.03610 * 309.45789 * 7 6 5 28 28 H 1.09003 * 109.68620 * 290.81757 * 27 7 6 29 29 C 1.53001 * 109.68222 * 170.25941 * 27 7 6 30 30 H 1.09004 * 109.47010 * 180.10048 * 1 2 3 31 31 H 1.09008 * 109.46999 * 300.09797 * 1 2 3 32 32 H 1.08998 * 109.47116 * 60.09888 * 1 2 3 33 33 H 1.08993 * 109.50967 * 177.49529 * 5 4 2 34 34 H 1.09001 * 109.51133 * 57.34471 * 5 4 2 35 35 H 1.09000 * 109.68602 * 292.57964 * 6 5 4 36 36 H 1.09005 * 109.71289 * 172.03801 * 6 5 4 37 37 H 1.08002 * 120.00281 * 5.54096 * 10 8 7 38 38 H 1.07999 * 120.00037 * 0.02562 * 11 10 8 39 39 H 1.07997 * 120.04913 * 359.97438 * 13 12 11 40 40 H 1.08004 * 119.94872 * 180.27905 * 14 13 12 41 41 H 0.97005 * 119.99749 * 179.97438 * 20 19 17 42 42 H 1.07998 * 119.94933 * 180.02562 * 25 15 14 43 43 H 1.08001 * 120.05094 * 179.97438 * 26 25 15 44 44 H 1.08996 * 109.47230 * 305.85476 * 29 27 7 45 45 H 1.09001 * 109.46933 * 65.85325 * 29 27 7 46 46 H 1.08999 * 109.46661 * 185.85159 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 8 2.0076 -0.6768 1.1651 5 6 3.4314 -0.6860 1.2944 6 6 4.0407 -1.4458 0.1107 7 7 3.5012 -0.8755 -1.1340 8 6 4.3193 -0.5023 -2.1379 9 8 3.8622 0.0471 -3.1233 10 6 5.7563 -0.7572 -2.0434 11 6 6.5898 -0.2851 -2.9949 12 6 8.0338 -0.5418 -2.9002 13 6 8.5481 -1.2708 -1.8210 14 6 9.9000 -1.5139 -1.7397 15 6 10.7572 -1.0259 -2.7215 16 8 12.0893 -1.2627 -2.6341 17 6 12.8510 -0.8638 -3.6720 18 1 12.4080 -0.3070 -4.4844 19 6 14.2042 -1.1683 -3.6965 20 7 14.7436 -1.8466 -2.7074 21 14 15.2602 -0.6148 -5.1346 22 1 14.4200 0.1267 -6.1091 23 1 16.3439 0.2720 -4.6405 24 1 15.8560 -1.8027 -5.7973 25 6 10.2513 -0.2959 -3.7929 26 6 8.9001 -0.0529 -3.8856 27 6 2.0421 -0.7246 -1.2501 28 1 1.5758 -1.7072 -1.3216 29 6 1.7066 0.0977 -2.4960 30 1 -0.3633 -1.0277 0.0018 31 1 -0.3633 0.5154 0.8892 32 1 -0.3633 0.5123 -0.8908 33 1 3.7091 -1.1795 2.2256 34 1 3.8030 0.3387 1.2996 35 1 3.7757 -2.5010 0.1761 36 1 5.1253 -1.3381 0.1238 37 1 6.1509 -1.3232 -1.2124 38 1 6.1954 0.2812 -3.8257 39 1 7.8843 -1.6455 -1.0560 40 1 10.2971 -2.0800 -0.9100 41 1 15.6898 -2.0598 -2.7248 42 1 10.9202 0.0806 -4.5527 43 1 8.5083 0.5140 -4.7172 44 1 2.2499 1.0420 -2.4653 45 1 1.9957 -0.4590 -3.3874 46 1 0.6350 0.2957 -2.5229 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167382864.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:26 Heat of formation + Delta-G solvation = -66.350174 kcal Electronic energy + Delta-G solvation = -27357.075690 eV Core-core repulsion = 23405.908097 eV Total energy + Delta-G solvation = -3951.167593 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.70483 -40.83703 -39.48816 -38.49431 -35.86048 -35.34789 -34.56865 -33.87926 -31.98104 -30.48180 -29.80001 -29.15163 -27.51657 -25.97227 -24.39270 -23.93617 -23.65602 -22.40980 -21.30963 -20.18246 -19.38776 -18.82724 -18.35205 -17.58331 -17.16334 -16.71699 -16.46750 -16.44160 -16.03643 -15.90057 -15.62481 -15.55480 -15.33361 -14.83242 -14.62594 -14.39671 -14.10924 -13.97584 -13.75687 -13.61286 -13.35074 -13.28393 -13.05561 -12.92941 -12.74050 -12.70717 -12.54011 -12.44119 -12.13534 -12.11132 -12.06442 -11.69327 -11.22016 -11.18487 -11.12478 -10.57527 -10.16638 -9.90392 -9.51495 -8.69180 -8.53164 -6.19111 -0.27135 0.57520 1.11211 1.35534 1.44450 1.53314 1.86222 2.14413 2.31518 2.73107 2.85189 3.16658 3.41044 3.49475 3.61611 3.88813 3.90502 3.97565 4.02348 4.07052 4.14472 4.22772 4.27763 4.33958 4.41102 4.45527 4.47788 4.65098 4.69287 4.76692 4.84410 4.91173 4.93339 4.96624 5.01785 5.04621 5.14007 5.18311 5.25682 5.32274 5.40868 5.54040 5.60536 5.63237 5.79440 5.96662 6.09117 6.13795 6.36056 6.91421 7.17636 7.68351 8.69026 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.032467 B = 0.001943 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.216464 B =14405.854028 C =15128.240167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.078 3.922 3 H 0.054 0.946 4 O -0.390 6.390 5 C 0.046 3.954 6 C 0.066 3.934 7 N -0.615 5.615 8 C 0.551 3.449 9 O -0.574 6.574 10 C -0.253 4.253 11 C 0.021 3.979 12 C -0.171 4.171 13 C -0.037 4.037 14 C -0.206 4.206 15 C 0.130 3.870 16 O -0.219 6.219 17 C -0.416 4.416 18 H 0.106 0.894 19 C -0.019 4.019 20 N -0.913 5.913 21 Si 1.018 2.982 22 H -0.251 1.251 23 H -0.268 1.268 24 H -0.268 1.268 25 C -0.249 4.249 26 C -0.039 4.039 27 C 0.114 3.886 28 H 0.082 0.918 29 C -0.126 4.126 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.132 0.868 34 H 0.053 0.947 35 H 0.088 0.912 36 H 0.114 0.886 37 H 0.150 0.850 38 H 0.125 0.875 39 H 0.159 0.841 40 H 0.124 0.876 41 H 0.275 0.725 42 H 0.124 0.876 43 H 0.144 0.856 44 H 0.049 0.951 45 H 0.055 0.945 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.345 2.504 5.581 26.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.020 3.980 3 H 0.072 0.928 4 O -0.309 6.309 5 C -0.032 4.032 6 C -0.056 4.056 7 N -0.348 5.348 8 C 0.344 3.656 9 O -0.457 6.457 10 C -0.274 4.274 11 C 0.001 3.999 12 C -0.172 4.172 13 C -0.054 4.054 14 C -0.225 4.225 15 C 0.078 3.922 16 O -0.124 6.124 17 C -0.492 4.492 18 H 0.123 0.877 19 C -0.218 4.218 20 N -0.550 5.550 21 Si 0.838 3.162 22 H -0.174 1.174 23 H -0.193 1.193 24 H -0.193 1.193 25 C -0.268 4.268 26 C -0.057 4.057 27 C 0.011 3.989 28 H 0.100 0.900 29 C -0.184 4.184 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.150 0.850 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.132 0.868 37 H 0.167 0.833 38 H 0.143 0.857 39 H 0.176 0.824 40 H 0.142 0.858 41 H 0.084 0.916 42 H 0.142 0.858 43 H 0.162 0.838 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -25.374 2.504 5.465 26.076 hybrid contribution 1.292 0.175 -0.702 1.480 sum -24.082 2.679 4.763 24.694 Atomic orbital electron populations 1.21808 0.90639 1.03713 1.03714 1.22585 0.96859 0.94575 0.84002 0.92767 1.87949 1.21971 1.77497 1.43515 1.23146 0.80365 1.00509 0.99131 1.22755 1.01248 0.98920 0.82685 1.48152 1.06635 1.63090 1.16914 1.18538 0.87501 0.77521 0.82018 1.90832 1.77212 1.44366 1.33257 1.22851 0.91551 1.09222 1.03727 1.22171 0.90405 0.91458 0.95854 1.18771 0.92743 1.07225 0.98489 1.21258 0.93079 0.94342 0.96761 1.20424 0.93338 1.07847 1.00919 1.20192 0.84423 0.92871 0.94700 1.83887 1.14172 1.71740 1.42609 1.21934 0.90889 1.36400 0.99946 0.87704 1.26608 0.97424 0.96105 1.01623 1.70152 1.13723 1.37985 1.33124 0.84527 0.77437 0.78394 0.75877 1.17424 1.19302 1.19335 1.21199 0.96986 1.07299 1.01344 1.21309 0.91478 0.95500 0.97462 1.22075 0.79645 1.00355 0.96871 0.89974 1.22028 1.00493 0.99984 0.95853 0.91223 0.91020 0.89378 0.84995 0.92825 0.89350 0.86783 0.83292 0.85686 0.82368 0.85823 0.91585 0.85801 0.83847 0.93197 0.92554 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.38 71.98 0.68 -0.90 16 2 C 0.08 1.23 2.85 30.69 0.09 1.32 16 3 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 4 O -0.39 -6.53 10.38 -148.98 -1.55 -8.07 16 5 C 0.05 0.57 6.99 72.08 0.50 1.08 16 6 C 0.07 0.89 6.49 86.35 0.56 1.45 16 7 N -0.61 -12.11 3.02 -798.67 -2.41 -14.52 16 8 C 0.55 13.71 7.53 86.32 0.65 14.36 16 9 O -0.57 -17.57 11.79 -4.42 -0.05 -17.62 16 10 C -0.25 -5.76 8.63 23.61 0.20 -5.56 16 11 C 0.02 0.55 9.45 23.82 0.23 0.77 16 12 C -0.17 -5.21 5.87 -20.13 -0.12 -5.33 16 13 C -0.04 -1.11 9.40 22.55 0.21 -0.90 16 14 C -0.21 -8.04 9.97 22.34 0.22 -7.82 16 15 C 0.13 6.13 6.66 22.72 0.15 6.28 16 16 O -0.22 -12.57 9.74 -20.34 -0.20 -12.77 16 17 C -0.42 -23.24 9.48 67.94 0.64 -22.59 16 18 H 0.11 5.36 5.18 -2.91 -0.02 5.35 16 19 C -0.02 -1.03 5.49 84.86 0.47 -0.56 16 20 N -0.91 -54.01 13.67 21.62 0.30 -53.72 16 21 Si 1.02 41.29 29.55 68.60 2.03 43.31 16 22 H -0.25 -9.40 7.11 99.48 0.71 -8.70 16 23 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 24 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 25 C -0.25 -10.32 9.14 22.34 0.20 -10.12 16 26 C -0.04 -1.32 9.78 22.55 0.22 -1.10 16 27 C 0.11 2.06 3.12 44.97 0.14 2.20 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 29 C -0.13 -2.54 7.52 71.98 0.54 -2.00 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.09 0.77 6.61 -2.39 -0.02 0.75 16 33 H 0.13 1.00 8.14 -2.39 -0.02 0.99 16 34 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.11 1.22 5.57 -2.38 -0.01 1.21 16 37 H 0.15 2.61 4.12 -2.91 -0.01 2.59 16 38 H 0.13 3.31 7.53 -2.91 -0.02 3.29 16 39 H 0.16 3.41 6.16 -2.91 -0.02 3.40 16 40 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 41 H 0.27 14.84 8.31 -92.70 -0.77 14.07 16 42 H 0.12 5.21 5.62 -2.91 -0.02 5.20 16 43 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 44 H 0.05 1.21 6.88 -2.39 -0.02 1.19 16 45 H 0.06 1.39 6.69 -2.39 -0.02 1.37 16 46 H 0.07 1.03 6.51 -2.39 -0.02 1.01 16 Total: -1.00 -71.34 369.52 4.71 -66.63 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: 1.01 Total: 26.17 kcal Atomic # 6 Polarization: -35.01 SS G_CDS: 5.59 Total: -29.42 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: -2.12 Total: -68.24 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -1.80 Total: -38.46 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Total: -71.34 4.71 -66.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167382864.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.278 kcal (2) G-P(sol) polarization free energy of solvation -71.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds