Wall clock time and date at job start Tue Mar 31 2020 16:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47138 * 2 1 4 4 N 1.46504 * 109.47015 * 180.02562 * 3 2 1 5 5 C 1.37098 * 119.99833 * 96.16056 * 4 3 2 6 6 H 1.08005 * 119.99449 * 174.16075 * 5 4 3 7 7 C 1.38946 * 120.00274 * 354.15964 * 5 4 3 8 8 N 1.31407 * 119.99896 * 322.48421 * 7 5 4 9 9 Si 1.86799 * 119.99948 * 142.48416 * 7 5 4 10 10 H 1.48498 * 109.47203 * 265.01681 * 9 7 5 11 11 H 1.48498 * 109.47050 * 145.01227 * 9 7 5 12 12 H 1.48505 * 109.47091 * 25.01620 * 9 7 5 13 13 C 1.34777 * 119.99962 * 276.16709 * 4 3 2 14 14 O 1.21293 * 120.00207 * 180.02562 * 13 4 3 15 15 C 1.50700 * 119.99969 * 359.97438 * 13 4 3 16 16 H 1.09008 * 115.55295 * 325.72698 * 15 13 4 17 17 C 1.52995 * 117.49954 * 111.39657 * 15 13 4 18 18 C 1.52997 * 60.00101 * 107.49135 * 17 15 13 19 19 H 1.08998 * 117.49795 * 252.51344 * 18 17 15 20 20 C 1.50702 * 117.49954 * 107.49289 * 18 17 15 21 21 C 1.38257 * 119.94062 * 351.10178 * 20 18 17 22 22 C 1.38194 * 120.10628 * 179.77676 * 21 20 18 23 23 C 1.38708 * 120.07041 * 0.56736 * 22 21 20 24 24 C 1.38971 * 119.81815 * 359.62253 * 23 22 21 25 25 C 1.38195 * 119.94062 * 171.38035 * 20 18 17 26 26 O 1.36101 * 120.78271 * 180.27047 * 24 23 22 27 27 C 1.43174 * 116.71639 * 342.81098 * 26 24 23 28 28 C 1.53463 * 108.25049 * 46.16454 * 27 26 24 29 29 O 1.36108 * 119.39577 * 179.53315 * 23 22 21 30 30 H 1.08996 * 109.47310 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47141 * 300.00163 * 1 2 3 32 32 H 1.09005 * 109.47087 * 60.00104 * 1 2 3 33 33 H 1.09009 * 109.47101 * 240.00045 * 2 1 3 34 34 H 1.09000 * 109.46724 * 120.00519 * 2 1 3 35 35 H 1.09001 * 109.47174 * 60.00355 * 3 2 1 36 36 H 1.08996 * 109.47256 * 299.99965 * 3 2 1 37 37 H 0.97000 * 119.99519 * 179.97438 * 8 7 5 38 38 H 1.09002 * 117.50048 * 214.98046 * 17 15 13 39 39 H 1.09001 * 117.50010 * 359.97438 * 17 15 13 40 40 H 1.07994 * 119.94647 * 0.03486 * 21 20 18 41 41 H 1.08004 * 119.96361 * 180.29357 * 22 21 20 42 42 H 1.07994 * 119.97208 * 359.97438 * 25 20 18 43 43 H 1.09002 * 109.70706 * 165.85736 * 27 26 24 44 44 H 1.09002 * 109.70595 * 286.42975 * 27 26 24 45 45 H 1.09001 * 109.71117 * 59.95316 * 28 27 26 46 46 H 1.09008 * 109.71046 * 180.53538 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1900 1.5700 -1.1814 6 1 5.2659 1.6649 -1.1739 7 6 3.5002 1.5773 -2.3875 8 7 2.4555 0.7972 -2.5516 9 14 4.0579 2.6960 -3.7756 10 1 3.2840 3.9626 -3.7319 11 1 3.8287 2.0205 -5.0781 12 1 5.5044 2.9940 -3.6205 13 6 4.1794 1.3169 1.1595 14 8 5.3924 1.3173 1.1591 15 6 3.4265 1.1771 2.4574 16 1 2.4878 1.7280 2.5182 17 6 3.5018 -0.1715 3.1761 18 6 4.2490 1.0387 3.7400 19 1 5.3348 1.0487 3.6451 20 6 3.6998 1.6746 4.9910 21 6 2.4673 1.2832 5.4802 22 6 1.9625 1.8608 6.6297 23 6 2.6859 2.8435 7.2892 24 6 3.9230 3.2397 6.7952 25 6 4.4264 2.6522 5.6440 26 8 4.6518 4.1981 7.4297 27 6 3.9518 5.0247 8.3659 28 6 3.0885 4.1193 9.2548 29 8 2.1713 3.4098 8.4148 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 1.9738 0.8026 -3.3935 38 1 2.6129 -0.5076 3.7100 39 1 4.0956 -0.9577 2.7100 40 1 1.9001 0.5218 4.9655 41 1 1.0016 1.5498 7.0124 42 1 5.3869 2.9590 5.2575 43 1 4.6673 5.5700 8.9815 44 1 3.3158 5.7295 7.8302 45 1 3.7244 3.4109 9.7856 46 1 2.5364 4.7268 9.9721 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172863123.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:55 Heat of formation + Delta-G solvation = -46.288379 kcal Electronic energy + Delta-G solvation = -28343.517797 eV Core-core repulsion = 24393.220148 eV Total energy + Delta-G solvation = -3950.297648 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.34868 -39.35354 -37.99881 -37.36193 -35.86392 -34.86731 -32.38956 -31.30818 -31.13590 -30.73554 -28.45007 -26.12126 -25.23935 -24.87527 -23.07519 -22.50491 -22.32842 -20.77653 -19.99293 -18.76691 -18.43526 -17.38323 -17.02008 -16.83632 -16.51506 -15.54012 -15.24461 -14.94967 -14.80144 -14.53947 -14.28682 -14.06186 -13.88019 -13.73230 -13.60189 -13.22226 -13.13373 -12.62500 -12.39663 -12.06267 -11.85797 -11.76399 -11.47415 -11.34599 -11.31668 -11.16077 -11.01632 -10.90107 -10.52822 -10.49737 -10.35491 -10.17649 -10.02821 -9.87674 -9.55365 -8.81256 -8.57726 -8.34156 -7.93912 -7.77929 -6.46927 -3.69102 1.23976 1.29387 2.85906 3.05631 3.13998 3.28952 3.34359 3.51922 3.78372 4.00272 4.13360 4.48814 4.52611 4.53971 4.62682 4.67037 4.94161 4.99285 5.01811 5.17178 5.21719 5.24948 5.31521 5.41768 5.47009 5.65242 5.79392 5.87598 5.95396 5.97479 5.99503 6.11560 6.18049 6.22909 6.37187 6.39778 6.47284 6.61081 6.63336 6.74328 6.76902 6.80889 6.82543 7.21465 7.32015 7.44814 7.73259 8.13463 8.51676 9.20620 9.46718 10.05483 10.56350 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.018025 B = 0.002761 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.008270 B =10137.159313 C =10795.375590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.131 4.131 3 C 0.128 3.872 4 N -0.432 5.432 5 C -0.324 4.324 6 H 0.106 0.894 7 C 0.045 3.955 8 N -0.840 5.840 9 Si 0.899 3.101 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.465 3.535 14 O -0.593 6.593 15 C -0.146 4.146 16 H 0.111 0.889 17 C -0.149 4.149 18 C -0.098 4.098 19 H 0.125 0.875 20 C -0.031 4.031 21 C -0.117 4.117 22 C -0.109 4.109 23 C 0.036 3.964 24 C 0.052 3.948 25 C -0.105 4.105 26 O -0.308 6.308 27 C 0.020 3.980 28 C 0.021 3.979 29 O -0.310 6.310 30 H 0.042 0.958 31 H 0.037 0.963 32 H 0.051 0.949 33 H 0.103 0.897 34 H 0.039 0.961 35 H 0.037 0.963 36 H 0.086 0.914 37 H 0.268 0.732 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.120 0.880 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.073 3.521 19.394 20.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.170 4.170 3 C 0.004 3.996 4 N -0.149 5.149 5 C -0.451 4.451 6 H 0.124 0.876 7 C -0.161 4.161 8 N -0.476 5.476 9 Si 0.725 3.275 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.192 1.192 13 C 0.253 3.747 14 O -0.480 6.480 15 C -0.167 4.167 16 H 0.129 0.871 17 C -0.186 4.186 18 C -0.117 4.117 19 H 0.143 0.857 20 C -0.032 4.032 21 C -0.135 4.135 22 C -0.128 4.128 23 C -0.008 4.008 24 C 0.007 3.993 25 C -0.123 4.123 26 O -0.222 6.222 27 C -0.055 4.055 28 C -0.055 4.055 29 O -0.225 6.225 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.121 0.879 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.153 0.847 41 H 0.151 0.849 42 H 0.155 0.845 43 H 0.137 0.863 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.622 3.521 19.249 20.107 hybrid contribution -0.061 0.748 -0.578 0.948 sum -4.683 4.270 18.671 19.717 Atomic orbital electron populations 1.21619 0.97371 1.00178 1.00470 1.21937 0.93877 0.98143 1.03009 1.21390 0.81020 0.96922 1.00317 1.43734 1.05009 1.60729 1.05395 1.19612 0.93972 1.49429 0.82077 0.87618 1.25074 0.96430 0.96442 0.98176 1.70228 1.21211 1.30190 1.26018 0.86357 0.79837 0.81294 0.80040 1.20428 1.21262 1.19243 1.18902 0.87248 0.84648 0.83862 1.90498 1.13808 1.57023 1.86628 1.22330 1.00733 1.01548 0.92081 0.87079 1.23020 1.02181 0.91171 1.02254 1.20979 0.99533 1.01228 0.89933 0.85735 1.18981 0.93803 0.95337 0.95062 1.20887 0.95816 1.00841 0.95909 1.20364 1.00688 0.95274 0.96476 1.18846 0.94476 0.97875 0.89601 1.18816 0.92307 0.93312 0.94860 1.20271 1.01833 0.97747 0.92498 1.86316 1.36038 1.44665 1.55202 1.23601 0.97649 0.92578 0.91701 1.23583 0.93476 0.95787 0.92605 1.86289 1.35744 1.67841 1.32611 0.93906 0.94375 0.92970 0.87903 0.94251 0.94434 0.89573 0.92199 0.88360 0.88080 0.84706 0.84912 0.84527 0.86253 0.90547 0.90651 0.86306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.91 37.16 0.37 -1.89 16 2 C -0.13 -2.61 5.78 -26.73 -0.15 -2.77 16 3 C 0.13 2.76 4.37 -4.04 -0.02 2.74 16 4 N -0.43 -10.87 2.64 -114.81 -0.30 -11.18 16 5 C -0.32 -8.92 9.34 -14.93 -0.14 -9.06 16 6 H 0.11 3.13 7.39 -52.48 -0.39 2.75 16 7 C 0.04 1.15 4.55 -17.47 -0.08 1.07 16 8 N -0.84 -21.01 9.41 55.50 0.52 -20.49 16 9 Si 0.90 20.10 29.68 -169.99 -5.05 15.05 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 C 0.46 11.32 7.36 -10.99 -0.08 11.24 16 14 O -0.59 -16.54 15.84 5.55 0.09 -16.45 16 15 C -0.15 -2.72 4.39 -91.77 -0.40 -3.12 16 16 H 0.11 1.93 6.53 -51.92 -0.34 1.60 16 17 C -0.15 -2.33 9.21 -26.73 -0.25 -2.58 16 18 C -0.10 -1.63 5.55 -91.77 -0.51 -2.14 16 19 H 0.12 2.26 7.67 -51.93 -0.40 1.87 16 20 C -0.03 -0.46 5.61 -104.63 -0.59 -1.05 16 21 C -0.12 -1.49 9.29 -39.59 -0.37 -1.86 16 22 C -0.11 -1.35 9.96 -39.42 -0.39 -1.74 16 23 C 0.04 0.48 6.49 -39.14 -0.25 0.23 16 24 C 0.05 0.72 6.49 -39.14 -0.25 0.47 16 25 C -0.10 -1.54 9.65 -39.42 -0.38 -1.92 16 26 O -0.31 -3.90 10.42 -32.85 -0.34 -4.24 16 27 C 0.02 0.17 7.26 37.40 0.27 0.44 16 28 C 0.02 0.17 7.26 37.40 0.27 0.44 16 29 O -0.31 -3.62 10.42 -32.87 -0.34 -3.96 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.10 2.40 6.29 -51.92 -0.33 2.07 16 34 H 0.04 0.75 7.26 -51.93 -0.38 0.37 16 35 H 0.04 0.72 6.28 -51.93 -0.33 0.40 16 36 H 0.09 2.01 6.09 -51.93 -0.32 1.69 16 37 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 38 H 0.10 1.24 6.18 -51.93 -0.32 0.92 16 39 H 0.10 1.69 8.14 -51.93 -0.42 1.26 16 40 H 0.14 1.50 6.02 -52.49 -0.32 1.18 16 41 H 0.13 1.36 8.06 -52.48 -0.42 0.93 16 42 H 0.14 1.97 8.06 -52.49 -0.42 1.55 16 43 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.12 0.54 8.14 -51.92 -0.42 0.11 16 LS Contribution 371.47 15.07 5.60 5.60 Total: -1.00 -31.34 371.47 -9.25 -40.59 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -6.47 Total: 6.57 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -2.96 Total: -11.50 kcal Atomic # 7 Polarization: -31.88 SS G_CDS: 0.22 Total: -31.66 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.60 Total: -24.65 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.05 Total: 15.05 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.34 -9.25 -40.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172863123.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.698 kcal (2) G-P(sol) polarization free energy of solvation -31.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds