Wall clock time and date at job start Tue Mar 31 2020 16:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47138 * 2 1 4 4 N 1.46504 * 109.47015 * 180.02562 * 3 2 1 5 5 C 1.37098 * 119.99833 * 96.16056 * 4 3 2 6 6 H 1.08005 * 119.99449 * 174.16075 * 5 4 3 7 7 C 1.38946 * 120.00274 * 354.15964 * 5 4 3 8 8 N 1.31407 * 119.99896 * 322.48421 * 7 5 4 9 9 Si 1.86799 * 119.99948 * 142.48416 * 7 5 4 10 10 H 1.48498 * 109.47203 * 265.01681 * 9 7 5 11 11 H 1.48498 * 109.47050 * 145.01227 * 9 7 5 12 12 H 1.48505 * 109.47091 * 25.01620 * 9 7 5 13 13 C 1.34777 * 119.99962 * 276.16709 * 4 3 2 14 14 O 1.21293 * 120.00207 * 180.02562 * 13 4 3 15 15 C 1.50700 * 119.99969 * 359.97438 * 13 4 3 16 16 H 1.09008 * 115.55295 * 325.72698 * 15 13 4 17 17 C 1.52995 * 117.49954 * 111.39657 * 15 13 4 18 18 C 1.52997 * 60.00101 * 107.49135 * 17 15 13 19 19 H 1.08998 * 117.49795 * 252.51344 * 18 17 15 20 20 C 1.50702 * 117.49954 * 107.49289 * 18 17 15 21 21 C 1.38257 * 119.94062 * 351.10178 * 20 18 17 22 22 C 1.38194 * 120.10628 * 179.77676 * 21 20 18 23 23 C 1.38708 * 120.07041 * 0.56736 * 22 21 20 24 24 C 1.38971 * 119.81815 * 359.62253 * 23 22 21 25 25 C 1.38195 * 119.94062 * 171.38035 * 20 18 17 26 26 O 1.36101 * 120.78271 * 180.27047 * 24 23 22 27 27 C 1.43174 * 116.71639 * 342.81098 * 26 24 23 28 28 C 1.53463 * 108.25049 * 46.16454 * 27 26 24 29 29 O 1.36108 * 119.39577 * 179.53315 * 23 22 21 30 30 H 1.08996 * 109.47310 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47141 * 300.00163 * 1 2 3 32 32 H 1.09005 * 109.47087 * 60.00104 * 1 2 3 33 33 H 1.09009 * 109.47101 * 240.00045 * 2 1 3 34 34 H 1.09000 * 109.46724 * 120.00519 * 2 1 3 35 35 H 1.09001 * 109.47174 * 60.00355 * 3 2 1 36 36 H 1.08996 * 109.47256 * 299.99965 * 3 2 1 37 37 H 0.97000 * 119.99519 * 179.97438 * 8 7 5 38 38 H 1.09002 * 117.50048 * 214.98046 * 17 15 13 39 39 H 1.09001 * 117.50010 * 359.97438 * 17 15 13 40 40 H 1.07994 * 119.94647 * 0.03486 * 21 20 18 41 41 H 1.08004 * 119.96361 * 180.29357 * 22 21 20 42 42 H 1.07994 * 119.97208 * 359.97438 * 25 20 18 43 43 H 1.09002 * 109.70706 * 165.85736 * 27 26 24 44 44 H 1.09002 * 109.70595 * 286.42975 * 27 26 24 45 45 H 1.09001 * 109.71117 * 59.95316 * 28 27 26 46 46 H 1.09008 * 109.71046 * 180.53538 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1900 1.5700 -1.1814 6 1 5.2659 1.6649 -1.1739 7 6 3.5002 1.5773 -2.3875 8 7 2.4555 0.7972 -2.5516 9 14 4.0579 2.6960 -3.7756 10 1 3.2840 3.9626 -3.7319 11 1 3.8287 2.0205 -5.0781 12 1 5.5044 2.9940 -3.6205 13 6 4.1794 1.3169 1.1595 14 8 5.3924 1.3173 1.1591 15 6 3.4265 1.1771 2.4574 16 1 2.4878 1.7280 2.5182 17 6 3.5018 -0.1715 3.1761 18 6 4.2490 1.0387 3.7400 19 1 5.3348 1.0487 3.6451 20 6 3.6998 1.6746 4.9910 21 6 2.4673 1.2832 5.4802 22 6 1.9625 1.8608 6.6297 23 6 2.6859 2.8435 7.2892 24 6 3.9230 3.2397 6.7952 25 6 4.4264 2.6522 5.6440 26 8 4.6518 4.1981 7.4297 27 6 3.9518 5.0247 8.3659 28 6 3.0885 4.1193 9.2548 29 8 2.1713 3.4098 8.4148 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8899 37 1 1.9738 0.8026 -3.3935 38 1 2.6129 -0.5076 3.7100 39 1 4.0956 -0.9577 2.7100 40 1 1.9001 0.5218 4.9655 41 1 1.0016 1.5498 7.0124 42 1 5.3869 2.9590 5.2575 43 1 4.6673 5.5700 8.9815 44 1 3.3158 5.7295 7.8302 45 1 3.7244 3.4109 9.7856 46 1 2.5364 4.7268 9.9721 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172863123.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:54 Heat of formation + Delta-G solvation = -63.668042 kcal Electronic energy + Delta-G solvation = -28344.271435 eV Core-core repulsion = 24393.220148 eV Total energy + Delta-G solvation = -3951.051287 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.23386 -40.90983 -39.31775 -38.22460 -37.40096 -36.51410 -34.18572 -33.11382 -31.94854 -31.73616 -29.39845 -27.90126 -26.63308 -26.02331 -24.50020 -23.74180 -23.35554 -22.33529 -21.02110 -20.18031 -19.61271 -18.79400 -18.38251 -18.09655 -17.82608 -16.80609 -16.38866 -16.23695 -16.08814 -15.88200 -15.46307 -15.37395 -15.21350 -15.15700 -14.83863 -14.65909 -14.08277 -13.94459 -13.83002 -13.68832 -13.22727 -13.06603 -13.01107 -12.69223 -12.58563 -12.48331 -12.26688 -12.15425 -12.05451 -11.98415 -11.97900 -11.48206 -11.40703 -11.20158 -11.13241 -10.73299 -10.25646 -9.72781 -9.57951 -8.95153 -8.44446 -5.75684 0.21179 0.30527 1.31882 1.42666 1.52975 1.91200 2.05218 2.27194 2.29372 2.54931 2.90356 3.07447 3.23912 3.30914 3.67446 3.69595 3.90949 3.95196 4.00076 4.01354 4.12319 4.24380 4.26883 4.36436 4.45535 4.47295 4.55676 4.59527 4.61578 4.71248 4.80276 4.88177 4.91455 5.04168 5.10570 5.12232 5.17953 5.22072 5.24690 5.38685 5.49105 5.60560 5.63270 5.68059 5.92138 5.98012 6.09701 6.41955 6.55289 7.21809 7.53521 8.13597 8.56679 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.018025 B = 0.002761 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.008270 B =10137.159313 C =10795.375590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.123 4.123 3 C 0.129 3.871 4 N -0.443 5.443 5 C -0.372 4.372 6 H 0.066 0.934 7 C 0.025 3.975 8 N -0.839 5.839 9 Si 0.959 3.041 10 H -0.267 1.267 11 H -0.273 1.273 12 H -0.282 1.282 13 C 0.450 3.550 14 O -0.646 6.646 15 C -0.158 4.158 16 H 0.131 0.869 17 C -0.124 4.124 18 C -0.090 4.090 19 H 0.095 0.905 20 C -0.043 4.043 21 C -0.109 4.109 22 C -0.108 4.108 23 C 0.035 3.965 24 C 0.042 3.958 25 C -0.125 4.125 26 O -0.329 6.329 27 C 0.012 3.988 28 C 0.017 3.983 29 O -0.319 6.319 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.276 0.724 38 H 0.142 0.858 39 H 0.086 0.914 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.122 0.878 43 H 0.152 0.848 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.272 3.705 21.355 23.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.161 4.161 3 C 0.006 3.994 4 N -0.159 5.159 5 C -0.499 4.499 6 H 0.084 0.916 7 C -0.182 4.182 8 N -0.474 5.474 9 Si 0.783 3.217 10 H -0.193 1.193 11 H -0.198 1.198 12 H -0.207 1.207 13 C 0.240 3.760 14 O -0.536 6.536 15 C -0.179 4.179 16 H 0.149 0.851 17 C -0.161 4.161 18 C -0.108 4.108 19 H 0.114 0.886 20 C -0.044 4.044 21 C -0.127 4.127 22 C -0.126 4.126 23 C -0.010 4.010 24 C -0.003 4.003 25 C -0.144 4.144 26 O -0.244 6.244 27 C -0.063 4.063 28 C -0.058 4.058 29 O -0.234 6.234 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.160 0.840 39 H 0.105 0.895 40 H 0.177 0.823 41 H 0.177 0.823 42 H 0.140 0.860 43 H 0.170 0.830 44 H 0.095 0.905 45 H 0.098 0.902 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.871 3.701 21.209 22.923 hybrid contribution 0.974 0.742 -1.120 1.660 sum -6.897 4.443 20.089 21.700 Atomic orbital electron populations 1.21536 0.94168 1.01623 1.01356 1.21778 0.96527 0.96302 1.01515 1.21504 0.78982 0.98333 1.00575 1.43950 1.06475 1.60442 1.05007 1.19358 0.92876 1.53481 0.84189 0.91575 1.25651 0.96637 0.96432 0.99466 1.70271 1.21052 1.29233 1.26823 0.85479 0.78613 0.79776 0.77809 1.19270 1.19789 1.20748 1.19882 0.87122 0.83425 0.85549 1.90448 1.16303 1.59149 1.87708 1.22143 1.01235 1.04727 0.89829 0.85127 1.23165 1.03093 0.89483 1.00388 1.20816 0.98051 1.01978 0.89998 0.88643 1.18821 0.95013 0.96025 0.94504 1.21077 0.94763 1.00912 0.95944 1.20689 1.01441 0.94546 0.95912 1.19048 0.93971 0.97840 0.90130 1.18865 0.92870 0.93783 0.94789 1.20297 1.01788 0.98704 0.93606 1.86281 1.37192 1.44872 1.56068 1.23982 0.98653 0.92268 0.91391 1.23933 0.93623 0.95908 0.92352 1.86273 1.36905 1.67978 1.32272 0.92201 0.91739 0.93807 0.91694 0.93441 0.91685 0.91554 0.91348 0.83984 0.89544 0.82341 0.82272 0.85956 0.83025 0.90468 0.90180 0.82611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 9.91 71.98 0.71 -3.12 16 2 C -0.12 -4.75 5.78 30.59 0.18 -4.58 16 3 C 0.13 5.56 4.37 86.38 0.38 5.93 16 4 N -0.44 -23.15 2.64 -635.53 -1.68 -24.82 16 5 C -0.37 -21.60 9.34 84.04 0.78 -20.82 16 6 H 0.07 4.27 7.39 -2.91 -0.02 4.24 16 7 C 0.03 1.32 4.55 84.93 0.39 1.70 16 8 N -0.84 -42.17 9.41 21.66 0.20 -41.97 16 9 Si 0.96 41.98 29.68 68.60 2.04 44.01 16 10 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 11 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 13 C 0.45 22.96 7.36 87.66 0.65 23.60 16 14 O -0.65 -38.75 15.84 -3.07 -0.05 -38.80 16 15 C -0.16 -5.90 4.39 -11.54 -0.05 -5.95 16 16 H 0.13 4.30 6.53 -2.38 -0.02 4.29 16 17 C -0.12 -3.72 9.21 30.59 0.28 -3.44 16 18 C -0.09 -3.01 5.55 -11.54 -0.06 -3.08 16 19 H 0.10 3.75 7.67 -2.39 -0.02 3.73 16 20 C -0.04 -1.24 5.61 -19.87 -0.11 -1.35 16 21 C -0.11 -2.48 9.29 22.26 0.21 -2.27 16 22 C -0.11 -2.31 9.96 22.37 0.22 -2.09 16 23 C 0.04 0.85 6.49 22.56 0.15 1.00 16 24 C 0.04 1.15 6.49 22.56 0.15 1.29 16 25 C -0.13 -3.77 9.65 22.37 0.22 -3.55 16 26 O -0.33 -8.18 10.42 -82.47 -0.86 -9.04 16 27 C 0.01 0.17 7.26 72.14 0.52 0.69 16 28 C 0.02 0.21 7.26 72.14 0.52 0.73 16 29 O -0.32 -6.58 10.42 -82.56 -0.86 -7.44 16 30 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.06 3.03 6.29 -2.38 -0.01 3.02 16 34 H 0.05 1.73 7.26 -2.39 -0.02 1.71 16 35 H 0.07 2.40 6.28 -2.39 -0.01 2.39 16 36 H 0.07 3.09 6.09 -2.39 -0.01 3.08 16 37 H 0.28 12.88 8.31 -92.71 -0.77 12.11 16 38 H 0.14 3.00 6.18 -2.39 -0.01 2.98 16 39 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 40 H 0.16 2.76 6.02 -2.91 -0.02 2.74 16 41 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 42 H 0.12 3.86 8.06 -2.91 -0.02 3.84 16 43 H 0.15 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.16 0.78 8.14 -2.38 -0.02 0.76 16 Total: -1.00 -73.76 371.47 4.92 -68.85 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 1.00 Total: 24.50 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: 5.13 Total: -15.28 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: -1.47 Total: -66.79 kcal Atomic # 8 Polarization: -53.52 SS G_CDS: -1.77 Total: -55.28 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.04 Total: 44.01 kcal Total: -73.76 4.92 -68.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172863123.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.177 kcal (2) G-P(sol) polarization free energy of solvation -73.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds