Wall clock time and date at job start Tue Mar 31 2020 16:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47333 * 2 1 4 4 N 1.46494 * 109.47247 * 179.97438 * 3 2 1 5 5 C 1.37097 * 120.00526 * 264.46287 * 4 3 2 6 6 H 1.07997 * 120.00176 * 146.14910 * 5 4 3 7 7 C 1.38954 * 119.99711 * 326.15279 * 5 4 3 8 8 N 1.31403 * 119.99958 * 337.75804 * 7 5 4 9 9 Si 1.86802 * 119.99569 * 157.75708 * 7 5 4 10 10 H 1.48494 * 109.47335 * 90.00028 * 9 7 5 11 11 H 1.48505 * 109.46984 * 210.00089 * 9 7 5 12 12 H 1.48498 * 109.47237 * 329.99810 * 9 7 5 13 13 C 1.34780 * 119.99921 * 84.46485 * 4 3 2 14 14 O 1.21293 * 120.00246 * 179.97438 * 13 4 3 15 15 C 1.50703 * 119.99806 * 0.02562 * 13 4 3 16 16 H 1.09000 * 115.56599 * 34.30991 * 15 13 4 17 17 C 1.53004 * 117.49762 * 248.62178 * 15 13 4 18 18 C 1.52998 * 59.99923 * 252.50920 * 17 15 13 19 19 H 1.08997 * 117.51748 * 107.48254 * 18 17 15 20 20 C 1.50698 * 117.49746 * 252.50855 * 18 17 15 21 21 C 1.38247 * 119.94620 * 8.64613 * 20 18 17 22 22 C 1.38200 * 120.11559 * 180.02562 * 21 20 18 23 23 C 1.38702 * 120.06211 * 0.09182 * 22 21 20 24 24 C 1.38967 * 119.82317 * 359.76295 * 23 22 21 25 25 C 1.38200 * 119.94137 * 188.62276 * 20 18 17 26 26 O 1.36112 * 120.78405 * 180.25857 * 24 23 22 27 27 C 1.43184 * 116.69969 * 342.72114 * 26 24 23 28 28 C 1.53462 * 108.24140 * 46.23011 * 27 26 24 29 29 O 1.36199 * 119.37220 * 179.63777 * 23 22 21 30 30 H 1.09007 * 109.47065 * 59.99961 * 1 2 3 31 31 H 1.08996 * 109.47288 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47234 * 300.00274 * 1 2 3 33 33 H 1.09002 * 109.47096 * 240.00259 * 2 1 3 34 34 H 1.08995 * 109.46703 * 120.00166 * 2 1 3 35 35 H 1.09001 * 109.47185 * 59.99696 * 3 2 1 36 36 H 1.09003 * 109.47738 * 300.00292 * 3 2 1 37 37 H 0.97003 * 119.99850 * 179.97438 * 8 7 5 38 38 H 1.09002 * 117.49641 * 145.02019 * 17 15 13 39 39 H 1.09001 * 117.49661 * 0.02562 * 17 15 13 40 40 H 1.07996 * 119.94471 * 0.05675 * 21 20 18 41 41 H 1.07996 * 119.96632 * 180.02562 * 22 21 20 42 42 H 1.07995 * 119.96843 * 359.97438 * 25 20 18 43 43 H 1.08998 * 109.70865 * 286.54281 * 27 26 24 44 44 H 1.09000 * 109.74330 * 165.94158 * 27 26 24 45 45 H 1.09001 * 109.71194 * 59.95403 * 28 27 26 46 46 H 1.09006 * 109.70881 * 180.53528 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1901 1.5571 1.1826 6 1 5.1327 1.0462 1.3122 7 6 3.6715 2.3307 2.2138 8 7 2.7995 3.2777 1.9503 9 14 4.2142 2.0243 3.9749 10 1 5.4032 2.8603 4.2791 11 1 3.1095 2.3787 4.9020 12 1 4.5611 0.5903 4.1436 13 6 4.1794 1.3297 -1.1609 14 8 5.3923 1.3301 -1.1605 15 6 3.4263 1.2042 -2.4602 16 1 2.4880 1.7561 -2.5153 17 6 3.5013 -0.1366 -3.1936 18 6 4.2489 1.0794 -3.7443 19 1 5.3347 1.0885 -3.6493 20 6 3.6998 1.7290 -4.9882 21 6 2.4697 1.3396 -5.4846 22 6 1.9630 1.9327 -6.6255 23 6 2.6887 2.9192 -7.2766 24 6 3.9238 3.3128 -6.7760 25 6 4.4266 2.7134 -5.6306 26 8 4.6500 4.2825 -7.3963 27 6 4.2885 4.5925 -8.7466 28 6 2.7616 4.7305 -8.8155 29 8 2.1794 3.4889 -8.4040 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9564 -0.8899 37 1 2.4373 3.8175 2.6703 38 1 2.6123 -0.4667 -3.7310 39 1 4.0949 -0.9280 -2.7359 40 1 1.9034 0.5710 -4.9798 41 1 1.0016 1.6269 -7.0109 42 1 5.3869 3.0164 -5.2404 43 1 4.6152 3.7902 -9.4081 44 1 4.7563 5.5300 -9.0471 45 1 2.4342 5.5287 -8.1492 46 1 2.4588 4.9577 -9.8377 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172863128.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:58 Heat of formation + Delta-G solvation = -53.965339 kcal Electronic energy + Delta-G solvation = -28286.773318 eV Core-core repulsion = 24336.142772 eV Total energy + Delta-G solvation = -3950.630546 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.32670 -39.36032 -37.97632 -37.33842 -35.82018 -34.88727 -32.69831 -31.19317 -31.08766 -30.72107 -28.44106 -26.13248 -25.24248 -24.90530 -23.07361 -22.52213 -22.32600 -20.93929 -19.99186 -18.74816 -18.43949 -17.36512 -16.99903 -16.83962 -16.41953 -15.52911 -15.23566 -15.03652 -14.79495 -14.52644 -14.47490 -14.08685 -13.86770 -13.75171 -13.70119 -13.20695 -13.15037 -12.64873 -12.46844 -12.04121 -11.77740 -11.67885 -11.59794 -11.36583 -11.31707 -11.24211 -11.09557 -10.94703 -10.65797 -10.54216 -10.35238 -10.29709 -10.11456 -9.87350 -9.81174 -8.90457 -8.56300 -8.40098 -7.92722 -7.45222 -6.31081 -3.91605 1.25027 1.30971 2.87599 3.07433 3.17219 3.26898 3.32501 3.51088 3.81085 4.02269 4.15204 4.50347 4.54095 4.56184 4.63818 4.67596 4.94883 4.96110 5.07283 5.19120 5.22332 5.24376 5.30375 5.41954 5.43073 5.63222 5.65357 5.76870 5.86734 5.88358 5.93925 6.06082 6.13124 6.21248 6.30235 6.37722 6.43617 6.44230 6.53613 6.61176 6.66964 6.75539 6.81569 6.97342 7.33403 7.33918 7.61682 8.27277 8.54321 9.21405 9.45178 10.06036 10.72353 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.017457 B = 0.002772 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.562980 B =10100.237563 C =10651.259503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.103 3.897 4 N -0.434 5.434 5 C -0.307 4.307 6 H 0.092 0.908 7 C 0.036 3.964 8 N -0.868 5.868 9 Si 0.916 3.084 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.269 1.269 13 C 0.483 3.517 14 O -0.583 6.583 15 C -0.151 4.151 16 H 0.115 0.885 17 C -0.152 4.152 18 C -0.095 4.095 19 H 0.125 0.875 20 C -0.032 4.032 21 C -0.116 4.116 22 C -0.109 4.109 23 C 0.037 3.963 24 C 0.052 3.948 25 C -0.104 4.104 26 O -0.307 6.307 27 C 0.021 3.979 28 C 0.020 3.980 29 O -0.310 6.310 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.113 0.887 36 H 0.047 0.953 37 H 0.267 0.733 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.075 0.925 44 H 0.120 0.880 45 H 0.076 0.924 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.505 -0.853 -18.572 19.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C -0.022 4.022 4 N -0.152 5.152 5 C -0.435 4.435 6 H 0.109 0.891 7 C -0.168 4.168 8 N -0.506 5.506 9 Si 0.742 3.258 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.271 3.729 14 O -0.468 6.468 15 C -0.172 4.172 16 H 0.133 0.867 17 C -0.189 4.189 18 C -0.114 4.114 19 H 0.143 0.857 20 C -0.032 4.032 21 C -0.134 4.134 22 C -0.128 4.128 23 C -0.008 4.008 24 C 0.008 3.992 25 C -0.123 4.123 26 O -0.222 6.222 27 C -0.055 4.055 28 C -0.055 4.055 29 O -0.225 6.225 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.130 0.870 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.153 0.847 41 H 0.151 0.849 42 H 0.155 0.845 43 H 0.094 0.906 44 H 0.138 0.862 45 H 0.095 0.905 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.010 -0.648 -18.467 19.145 hybrid contribution 0.027 0.288 0.662 0.723 sum -4.982 -0.360 -17.805 18.492 Atomic orbital electron populations 1.21674 0.96484 1.00577 1.01482 1.21959 0.94742 0.99291 1.01776 1.21667 0.81944 0.94548 1.03991 1.43417 1.04676 1.62358 1.04706 1.19446 1.06814 1.28282 0.88953 0.89057 1.25317 0.97314 0.93713 1.00476 1.69929 1.30882 1.16814 1.32956 0.86112 0.78295 0.79117 0.82265 1.20308 1.20808 1.19404 1.19350 0.87352 0.82387 0.83778 1.90507 1.13979 1.55687 1.86603 1.22468 1.01139 1.01480 0.92115 0.86721 1.23037 1.02268 0.91163 1.02477 1.20959 0.99514 1.00816 0.90107 0.85733 1.18956 0.93971 0.95263 0.95057 1.20869 0.95871 1.00856 0.95829 1.20355 0.99910 0.97092 0.95438 1.18862 0.92532 0.98951 0.90410 1.18810 0.90468 0.93746 0.96200 1.20276 1.01410 0.96209 0.94377 1.86333 1.56079 1.52955 1.26795 1.23593 0.95773 1.03422 0.82688 1.23591 0.93553 0.85698 1.02690 1.86309 1.59449 1.36588 1.40158 0.93218 0.93513 0.92847 0.92849 0.91930 0.86983 0.93467 0.92253 0.88322 0.88155 0.84742 0.84902 0.84502 0.90641 0.86238 0.90544 0.86308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.91 37.16 0.37 -1.73 16 2 C -0.14 -2.50 6.18 -26.73 -0.17 -2.66 16 3 C 0.10 2.23 4.71 -4.05 -0.02 2.21 16 4 N -0.43 -11.04 2.56 -114.81 -0.29 -11.33 16 5 C -0.31 -8.55 8.98 -14.93 -0.13 -8.69 16 6 H 0.09 2.67 7.70 -52.49 -0.40 2.26 16 7 C 0.04 0.95 4.92 -17.47 -0.09 0.86 16 8 N -0.87 -23.39 11.33 55.50 0.63 -22.76 16 9 Si 0.92 20.62 29.61 -169.99 -5.03 15.59 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 C 0.48 11.90 7.37 -10.98 -0.08 11.82 16 14 O -0.58 -16.42 16.08 5.55 0.09 -16.33 16 15 C -0.15 -2.83 4.44 -91.77 -0.41 -3.24 16 16 H 0.11 2.06 6.52 -51.93 -0.34 1.72 16 17 C -0.15 -2.30 9.28 -26.73 -0.25 -2.55 16 18 C -0.10 -1.59 5.55 -91.77 -0.51 -2.10 16 19 H 0.12 2.27 7.67 -51.93 -0.40 1.87 16 20 C -0.03 -0.48 5.61 -104.63 -0.59 -1.06 16 21 C -0.12 -1.50 9.29 -39.59 -0.37 -1.87 16 22 C -0.11 -1.36 9.96 -39.42 -0.39 -1.76 16 23 C 0.04 0.50 6.49 -39.14 -0.25 0.24 16 24 C 0.05 0.75 6.49 -39.14 -0.25 0.49 16 25 C -0.10 -1.57 9.65 -39.42 -0.38 -1.95 16 26 O -0.31 -4.00 10.42 -32.82 -0.34 -4.35 16 27 C 0.02 0.18 7.26 37.40 0.27 0.45 16 28 C 0.02 0.17 7.26 37.40 0.27 0.44 16 29 O -0.31 -3.69 10.43 -33.10 -0.35 -4.04 16 30 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.91 7.39 -51.93 -0.38 0.52 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.11 2.70 5.34 -51.93 -0.28 2.42 16 36 H 0.05 0.96 6.25 -51.93 -0.32 0.63 16 37 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 38 H 0.10 1.19 6.17 -51.93 -0.32 0.87 16 39 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 40 H 0.13 1.48 6.01 -52.49 -0.32 1.16 16 41 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 42 H 0.14 2.04 8.06 -52.49 -0.42 1.62 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.12 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 375.87 15.07 5.66 5.66 Total: -1.00 -32.87 375.87 -9.16 -42.02 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.55 Total: 6.61 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -2.98 Total: -11.09 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.34 Total: -34.09 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.60 Total: -24.71 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.87 -9.16 -42.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172863128.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.941 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds