Wall clock time and date at job start Tue Mar 31 2020 16:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47333 * 2 1 4 4 N 1.46494 * 109.47247 * 179.97438 * 3 2 1 5 5 C 1.37097 * 120.00526 * 264.46287 * 4 3 2 6 6 H 1.07997 * 120.00176 * 146.14910 * 5 4 3 7 7 C 1.38954 * 119.99711 * 326.15279 * 5 4 3 8 8 N 1.31403 * 119.99958 * 337.75804 * 7 5 4 9 9 Si 1.86802 * 119.99569 * 157.75708 * 7 5 4 10 10 H 1.48494 * 109.47335 * 90.00028 * 9 7 5 11 11 H 1.48505 * 109.46984 * 210.00089 * 9 7 5 12 12 H 1.48498 * 109.47237 * 329.99810 * 9 7 5 13 13 C 1.34780 * 119.99921 * 84.46485 * 4 3 2 14 14 O 1.21293 * 120.00246 * 179.97438 * 13 4 3 15 15 C 1.50703 * 119.99806 * 0.02562 * 13 4 3 16 16 H 1.09000 * 115.56599 * 34.30991 * 15 13 4 17 17 C 1.53004 * 117.49762 * 248.62178 * 15 13 4 18 18 C 1.52998 * 59.99923 * 252.50920 * 17 15 13 19 19 H 1.08997 * 117.51748 * 107.48254 * 18 17 15 20 20 C 1.50698 * 117.49746 * 252.50855 * 18 17 15 21 21 C 1.38247 * 119.94620 * 8.64613 * 20 18 17 22 22 C 1.38200 * 120.11559 * 180.02562 * 21 20 18 23 23 C 1.38702 * 120.06211 * 0.09182 * 22 21 20 24 24 C 1.38967 * 119.82317 * 359.76295 * 23 22 21 25 25 C 1.38200 * 119.94137 * 188.62276 * 20 18 17 26 26 O 1.36112 * 120.78405 * 180.25857 * 24 23 22 27 27 C 1.43184 * 116.69969 * 342.72114 * 26 24 23 28 28 C 1.53462 * 108.24140 * 46.23011 * 27 26 24 29 29 O 1.36199 * 119.37220 * 179.63777 * 23 22 21 30 30 H 1.09007 * 109.47065 * 59.99961 * 1 2 3 31 31 H 1.08996 * 109.47288 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47234 * 300.00274 * 1 2 3 33 33 H 1.09002 * 109.47096 * 240.00259 * 2 1 3 34 34 H 1.08995 * 109.46703 * 120.00166 * 2 1 3 35 35 H 1.09001 * 109.47185 * 59.99696 * 3 2 1 36 36 H 1.09003 * 109.47738 * 300.00292 * 3 2 1 37 37 H 0.97003 * 119.99850 * 179.97438 * 8 7 5 38 38 H 1.09002 * 117.49641 * 145.02019 * 17 15 13 39 39 H 1.09001 * 117.49661 * 0.02562 * 17 15 13 40 40 H 1.07996 * 119.94471 * 0.05675 * 21 20 18 41 41 H 1.07996 * 119.96632 * 180.02562 * 22 21 20 42 42 H 1.07995 * 119.96843 * 359.97438 * 25 20 18 43 43 H 1.08998 * 109.70865 * 286.54281 * 27 26 24 44 44 H 1.09000 * 109.74330 * 165.94158 * 27 26 24 45 45 H 1.09001 * 109.71194 * 59.95403 * 28 27 26 46 46 H 1.09006 * 109.70881 * 180.53528 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1901 1.5571 1.1826 6 1 5.1327 1.0462 1.3122 7 6 3.6715 2.3307 2.2138 8 7 2.7995 3.2777 1.9503 9 14 4.2142 2.0243 3.9749 10 1 5.4032 2.8603 4.2791 11 1 3.1095 2.3787 4.9020 12 1 4.5611 0.5903 4.1436 13 6 4.1794 1.3297 -1.1609 14 8 5.3923 1.3301 -1.1605 15 6 3.4263 1.2042 -2.4602 16 1 2.4880 1.7561 -2.5153 17 6 3.5013 -0.1366 -3.1936 18 6 4.2489 1.0794 -3.7443 19 1 5.3347 1.0885 -3.6493 20 6 3.6998 1.7290 -4.9882 21 6 2.4697 1.3396 -5.4846 22 6 1.9630 1.9327 -6.6255 23 6 2.6887 2.9192 -7.2766 24 6 3.9238 3.3128 -6.7760 25 6 4.4266 2.7134 -5.6306 26 8 4.6500 4.2825 -7.3963 27 6 4.2885 4.5925 -8.7466 28 6 2.7616 4.7305 -8.8155 29 8 2.1794 3.4889 -8.4040 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9564 -0.8899 37 1 2.4373 3.8175 2.6703 38 1 2.6123 -0.4667 -3.7310 39 1 4.0949 -0.9280 -2.7359 40 1 1.9034 0.5710 -4.9798 41 1 1.0016 1.6269 -7.0109 42 1 5.3869 3.0164 -5.2404 43 1 4.6152 3.7902 -9.4081 44 1 4.7563 5.5300 -9.0471 45 1 2.4342 5.5287 -8.1492 46 1 2.4588 4.9577 -9.8377 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172863128.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:57 Heat of formation + Delta-G solvation = -72.838365 kcal Electronic energy + Delta-G solvation = -28287.591714 eV Core-core repulsion = 24336.142772 eV Total energy + Delta-G solvation = -3951.448942 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.23747 -40.92946 -39.31427 -38.22814 -37.34876 -36.54474 -34.45588 -32.97542 -31.95650 -31.74668 -29.41332 -27.93923 -26.64666 -26.03091 -24.53105 -23.75660 -23.37088 -22.41415 -21.02781 -20.20487 -19.62537 -18.80778 -18.32075 -18.06768 -17.82392 -17.00856 -16.41643 -16.26810 -16.14388 -15.85220 -15.48050 -15.38535 -15.29505 -15.14761 -14.84350 -14.69183 -14.11179 -14.05352 -13.77097 -13.46042 -13.24718 -13.09724 -12.98028 -12.92153 -12.68248 -12.54505 -12.29978 -12.20496 -12.07400 -11.97659 -11.93863 -11.58692 -11.46197 -11.32029 -11.18745 -10.83481 -10.34862 -9.59222 -9.44383 -8.96666 -8.34367 -6.03804 0.19927 0.29812 1.35163 1.39950 1.52900 1.90326 2.05014 2.26314 2.29898 2.56206 2.94165 3.05644 3.19050 3.30093 3.66823 3.69432 3.87989 3.94284 3.97691 4.01361 4.10924 4.21881 4.25604 4.34683 4.41581 4.42517 4.44561 4.58475 4.58907 4.67454 4.78700 4.83701 4.87273 5.03696 5.07486 5.10924 5.16818 5.20437 5.20508 5.34692 5.44837 5.49673 5.59188 5.66617 5.67009 5.91106 6.20672 6.40809 6.54974 7.18345 7.49635 8.09883 8.67381 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.017457 B = 0.002772 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.562980 B =10100.237563 C =10651.259503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.104 3.896 4 N -0.447 5.447 5 C -0.344 4.344 6 H 0.062 0.938 7 C 0.004 3.996 8 N -0.886 5.886 9 Si 0.979 3.021 10 H -0.279 1.279 11 H -0.265 1.265 12 H -0.267 1.267 13 C 0.468 3.532 14 O -0.636 6.636 15 C -0.167 4.167 16 H 0.128 0.872 17 C -0.119 4.119 18 C -0.091 4.091 19 H 0.096 0.904 20 C -0.045 4.045 21 C -0.109 4.109 22 C -0.107 4.107 23 C 0.034 3.966 24 C 0.042 3.958 25 C -0.127 4.127 26 O -0.330 6.330 27 C 0.013 3.987 28 C 0.015 3.985 29 O -0.318 6.318 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.041 0.959 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.274 0.726 38 H 0.145 0.855 39 H 0.092 0.908 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.121 0.879 43 H 0.082 0.918 44 H 0.151 0.849 45 H 0.075 0.925 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.378 -1.457 -20.394 22.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.168 4.168 3 C -0.019 4.019 4 N -0.164 5.164 5 C -0.472 4.472 6 H 0.080 0.920 7 C -0.199 4.199 8 N -0.524 5.524 9 Si 0.802 3.198 10 H -0.205 1.205 11 H -0.189 1.189 12 H -0.192 1.192 13 C 0.258 3.742 14 O -0.524 6.524 15 C -0.188 4.188 16 H 0.146 0.854 17 C -0.156 4.156 18 C -0.110 4.110 19 H 0.114 0.886 20 C -0.045 4.045 21 C -0.126 4.126 22 C -0.126 4.126 23 C -0.011 4.011 24 C -0.003 4.003 25 C -0.146 4.146 26 O -0.246 6.246 27 C -0.062 4.062 28 C -0.060 4.060 29 O -0.233 6.233 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.162 0.838 39 H 0.111 0.889 40 H 0.179 0.821 41 H 0.178 0.822 42 H 0.139 0.861 43 H 0.100 0.900 44 H 0.168 0.832 45 H 0.094 0.906 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.924 -1.243 -20.304 21.830 hybrid contribution 0.977 0.600 1.105 1.592 sum -6.947 -0.642 -19.199 20.427 Atomic orbital electron populations 1.21625 0.93315 1.02416 1.02059 1.21850 0.97326 0.96277 1.01354 1.21755 0.79782 0.97079 1.03278 1.43712 1.06205 1.62090 1.04400 1.19393 1.06986 1.29703 0.91148 0.91989 1.26055 0.97144 0.92904 1.03784 1.69996 1.31206 1.16887 1.34304 0.85175 0.78180 0.78897 0.77532 1.20499 1.18904 1.19166 1.20308 0.87218 0.81071 0.85555 1.90456 1.16399 1.57831 1.87699 1.22228 1.01419 1.05295 0.89823 0.85409 1.23208 1.03097 0.89267 0.99997 1.20827 0.98084 1.02087 0.89976 0.88602 1.18834 0.95228 0.95828 0.94598 1.21089 0.94757 1.00958 0.95825 1.20703 1.00699 0.96235 0.94914 1.19074 0.92145 0.99048 0.90787 1.18866 0.91161 0.94101 0.96170 1.20309 1.01380 0.97361 0.95548 1.86293 1.56624 1.52587 1.29050 1.23983 0.96463 1.05164 0.80578 1.23933 0.93122 0.84187 1.04720 1.86295 1.59753 1.37940 1.39329 0.91419 0.91016 0.93540 0.91586 0.94048 0.89451 0.92152 0.91631 0.83775 0.88901 0.82110 0.82150 0.86120 0.89998 0.83152 0.90640 0.82446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 9.91 71.98 0.71 -2.86 16 2 C -0.13 -4.51 6.18 30.59 0.19 -4.32 16 3 C 0.10 4.55 4.71 86.38 0.41 4.96 16 4 N -0.45 -23.63 2.56 -635.54 -1.63 -25.25 16 5 C -0.34 -20.13 8.98 84.04 0.75 -19.37 16 6 H 0.06 3.89 7.70 -2.91 -0.02 3.87 16 7 C 0.00 0.20 4.92 84.93 0.42 0.61 16 8 N -0.89 -48.57 11.33 21.66 0.25 -48.33 16 9 Si 0.98 43.08 29.61 68.60 2.03 45.11 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 12 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 13 C 0.47 24.12 7.37 87.66 0.65 24.76 16 14 O -0.64 -38.23 16.08 -3.07 -0.05 -38.28 16 15 C -0.17 -6.26 4.44 -11.54 -0.05 -6.31 16 16 H 0.13 4.43 6.52 -2.39 -0.02 4.41 16 17 C -0.12 -3.39 9.28 30.59 0.28 -3.10 16 18 C -0.09 -3.07 5.55 -11.54 -0.06 -3.13 16 19 H 0.10 3.76 7.67 -2.39 -0.02 3.75 16 20 C -0.04 -1.30 5.61 -19.87 -0.11 -1.41 16 21 C -0.11 -2.49 9.29 22.26 0.21 -2.28 16 22 C -0.11 -2.35 9.96 22.37 0.22 -2.12 16 23 C 0.03 0.86 6.49 22.56 0.15 1.01 16 24 C 0.04 1.19 6.49 22.56 0.15 1.34 16 25 C -0.13 -3.97 9.65 22.37 0.22 -3.75 16 26 O -0.33 -8.56 10.42 -82.65 -0.86 -9.42 16 27 C 0.01 0.19 7.26 72.14 0.52 0.71 16 28 C 0.02 0.21 7.26 72.14 0.52 0.73 16 29 O -0.32 -6.76 10.43 -83.65 -0.87 -7.64 16 30 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 2.12 7.39 -2.39 -0.02 2.10 16 34 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.09 4.28 5.34 -2.39 -0.01 4.26 16 36 H 0.06 2.42 6.25 -2.39 -0.01 2.40 16 37 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 38 H 0.14 2.80 6.17 -2.39 -0.01 2.78 16 39 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 40 H 0.16 2.74 6.01 -2.91 -0.02 2.72 16 41 H 0.16 2.60 8.06 -2.91 -0.02 2.57 16 42 H 0.12 3.97 8.06 -2.91 -0.02 3.95 16 43 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.15 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.16 0.89 8.14 -2.38 -0.02 0.87 16 Total: -1.00 -77.09 375.87 5.03 -72.05 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 0.99 Total: 26.31 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 5.17 Total: -14.55 kcal Atomic # 7 Polarization: -72.20 SS G_CDS: -1.38 Total: -73.58 kcal Atomic # 8 Polarization: -53.56 SS G_CDS: -1.78 Total: -55.34 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -77.09 5.03 -72.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172863128.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.783 kcal (2) G-P(sol) polarization free energy of solvation -77.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds