Wall clock time and date at job start Tue Mar 31 2020 17:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46801 * 2 1 4 4 C 1.52995 * 109.47344 * 239.99851 * 2 1 3 5 5 C 1.53007 * 109.47384 * 65.56661 * 4 2 1 6 6 C 1.52994 * 109.47261 * 185.90938 * 5 4 2 7 7 C 1.52999 * 109.46843 * 180.02562 * 6 5 4 8 8 C 1.53008 * 109.47262 * 60.00276 * 7 6 5 9 9 C 1.53001 * 109.46745 * 299.99833 * 8 7 6 10 10 C 1.52995 * 109.47317 * 59.99802 * 9 8 7 11 11 C 1.50697 * 109.46985 * 119.99584 * 2 1 3 12 12 O 1.21281 * 120.00012 * 120.00225 * 11 2 1 13 13 N 1.34777 * 120.00225 * 299.99827 * 11 2 1 14 14 S 1.65602 * 120.00055 * 179.97438 * 13 11 2 15 15 O 1.42093 * 104.27758 * 181.07328 * 14 13 11 16 16 O 1.42098 * 104.27832 * 308.93738 * 14 13 11 17 17 C 1.81402 * 104.44473 * 65.00584 * 14 13 11 18 18 C 1.52996 * 109.47280 * 179.97438 * 17 14 13 19 19 C 1.50694 * 109.47336 * 179.97438 * 18 17 14 20 20 H 1.07997 * 120.00576 * 0.02562 * 19 18 17 21 21 C 1.37881 * 120.00090 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99835 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99969 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47125 * 90.00807 * 23 21 19 25 25 H 1.48512 * 109.47007 * 210.00424 * 23 21 19 26 26 H 1.48493 * 109.47522 * 330.00422 * 23 21 19 27 27 H 1.08994 * 109.47360 * 174.39310 * 1 2 3 28 28 H 1.09001 * 109.47191 * 294.39514 * 1 2 3 29 29 H 1.09007 * 109.46975 * 54.39628 * 1 2 3 30 30 H 1.09007 * 109.47091 * 305.57495 * 4 2 1 31 31 H 1.08997 * 109.47759 * 185.57015 * 4 2 1 32 32 H 1.09003 * 109.46721 * 305.91453 * 5 4 2 33 33 H 1.09000 * 109.47528 * 60.00367 * 6 5 4 34 34 H 1.09003 * 109.46933 * 299.99989 * 6 5 4 35 35 H 1.09001 * 109.47309 * 300.00195 * 7 6 5 36 36 H 1.08999 * 109.47304 * 179.97438 * 7 6 5 37 37 H 1.08992 * 109.47136 * 59.99775 * 8 7 6 38 38 H 1.09000 * 109.46750 * 179.97438 * 8 7 6 39 39 H 1.09003 * 109.46876 * 180.02562 * 9 8 7 40 40 H 1.09003 * 109.46893 * 300.00107 * 9 8 7 41 41 H 1.09001 * 109.46983 * 59.99764 * 10 9 8 42 42 H 1.08999 * 109.47517 * 180.02562 * 10 9 8 43 43 H 0.97003 * 120.00147 * 0.02562 * 13 11 2 44 44 H 1.09000 * 109.47413 * 300.00292 * 17 14 13 45 45 H 1.09006 * 109.47210 * 59.99518 * 17 14 13 46 46 H 1.09006 * 109.47237 * 300.00118 * 18 17 14 47 47 H 1.09006 * 109.47195 * 59.99751 * 18 17 14 48 48 H 0.96999 * 119.99832 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6475 0.0762 -2.4946 6 6 2.0267 -0.7156 -3.7476 7 6 1.6348 0.0822 -4.9930 8 6 2.3732 1.4223 -4.9936 9 6 1.9941 2.2140 -3.7404 10 6 2.3859 1.4163 -2.4951 11 6 2.0323 -0.7103 1.2305 12 8 2.7296 -1.6964 1.1193 13 7 1.7067 -0.2498 2.4546 14 16 2.2582 -1.0307 3.8068 15 8 1.7051 -0.2928 4.8877 16 8 1.9079 -2.3912 3.5931 17 6 4.0590 -0.8204 3.7480 18 6 4.6925 -1.5063 4.9600 19 6 6.1885 -1.3321 4.9109 20 1 6.6423 -0.7865 4.0968 21 6 6.9781 -1.8686 5.9058 22 7 6.4256 -2.5327 6.8975 23 14 8.8327 -1.6533 5.8445 24 1 9.2103 -0.4078 6.5595 25 1 9.4878 -2.8160 6.4959 26 1 9.2743 -1.5650 4.4295 27 1 -0.3634 -1.0227 -0.1004 28 1 -0.3633 0.4245 0.9359 29 1 -0.3633 0.5983 -0.8356 30 1 1.5975 -1.7161 -1.3005 31 1 3.1254 -0.8085 -1.2008 32 1 0.5721 0.2536 -2.4884 33 1 1.5010 -1.6704 -3.7471 34 1 3.1022 -0.8929 -3.7537 35 1 0.5594 0.2600 -4.9870 36 1 1.9053 -0.4816 -5.8857 37 1 3.4486 1.2445 -4.9995 38 1 2.0943 1.9904 -5.8810 39 1 2.5198 3.1689 -3.7411 40 1 0.9186 2.3917 -3.7346 41 1 3.4613 1.2385 -2.5010 42 1 2.1154 1.9801 -1.6024 43 1 1.1488 0.5387 2.5436 44 1 4.4474 -1.2676 2.8329 45 1 4.3015 0.2422 3.7643 46 1 4.3041 -1.0587 5.8749 47 1 4.4500 -2.5689 4.9441 48 1 6.9811 -2.9103 7.5972 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181274207.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:38 Heat of formation + Delta-G solvation = -161.413054 kcal Electronic energy + Delta-G solvation = -27005.583148 eV Core-core repulsion = 23185.737271 eV Total energy + Delta-G solvation = -3819.845878 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.49637 -38.96587 -36.70732 -35.60490 -35.16936 -34.39525 -33.88969 -31.21313 -31.16768 -30.85611 -26.63269 -25.63470 -24.65158 -22.96794 -21.92115 -21.58607 -20.35200 -19.80650 -19.29848 -17.86901 -17.48746 -16.51407 -15.99182 -15.76051 -15.38461 -15.07566 -14.97180 -14.60641 -14.53862 -14.35570 -14.29168 -13.64909 -13.51180 -13.34040 -12.72232 -12.53951 -12.51881 -12.40646 -12.17335 -12.10412 -11.79421 -11.71537 -11.60836 -11.58751 -11.42746 -11.31876 -11.07879 -11.01482 -10.99039 -10.82770 -10.67427 -10.41601 -10.37420 -10.33029 -10.21836 -10.02619 -9.69665 -9.17341 -8.49408 -6.11696 -4.17099 0.52157 2.11950 2.75999 3.27235 3.33387 3.36824 3.97383 4.13813 4.26826 4.37646 4.37932 4.48473 4.59306 4.64410 4.69764 4.86397 4.91105 4.96614 5.07909 5.15495 5.19782 5.21943 5.22368 5.23606 5.31342 5.41791 5.50154 5.60646 5.63969 5.66910 5.71180 5.73392 5.77518 5.85398 5.85642 5.91570 5.96832 6.02369 6.11886 6.25250 6.46493 6.66520 7.28939 7.35651 7.50486 7.81391 8.17356 8.85845 9.47372 10.99459 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014160 B = 0.002746 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.960204 B =10193.030834 C =11510.520829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 H 0.108 0.892 4 C -0.102 4.102 5 C -0.087 4.087 6 C -0.115 4.115 7 C -0.119 4.119 8 C -0.121 4.121 9 C -0.119 4.119 10 C -0.120 4.120 11 C 0.535 3.465 12 O -0.487 6.487 13 N -1.059 6.059 14 S 2.565 3.435 15 O -0.956 6.956 16 O -0.939 6.939 17 C -0.576 4.576 18 C 0.030 3.970 19 C -0.519 4.519 20 H 0.062 0.938 21 C 0.058 3.942 22 N -0.890 5.890 23 Si 0.901 3.099 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.272 1.272 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.427 0.573 44 H 0.131 0.869 45 H 0.121 0.879 46 H 0.034 0.966 47 H 0.036 0.964 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.780 10.639 -22.549 28.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.137 4.137 3 H 0.126 0.874 4 C -0.140 4.140 5 C -0.106 4.106 6 C -0.153 4.153 7 C -0.157 4.157 8 C -0.158 4.158 9 C -0.157 4.157 10 C -0.157 4.157 11 C 0.321 3.679 12 O -0.358 6.358 13 N -0.821 5.821 14 S 2.666 3.334 15 O -0.947 6.947 16 O -0.929 6.929 17 C -0.710 4.710 18 C -0.010 4.010 19 C -0.558 4.558 20 H 0.080 0.920 21 C -0.145 4.145 22 N -0.529 5.529 23 Si 0.729 3.271 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.197 1.197 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.262 0.738 44 H 0.149 0.851 45 H 0.139 0.861 46 H 0.052 0.948 47 H 0.054 0.946 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.837 9.344 -21.875 27.030 hybrid contribution 1.203 0.827 -0.116 1.464 sum -11.634 10.171 -21.990 26.877 Atomic orbital electron populations 1.21864 0.92481 1.03434 1.02849 1.21504 0.98082 1.01416 0.92652 0.87369 1.21560 1.02389 0.98916 0.91160 1.21228 1.00389 0.94894 0.94066 1.21578 1.01682 0.98269 0.93766 1.21529 1.00174 0.96088 0.97862 1.21546 1.00471 0.96156 0.97665 1.21526 1.01131 0.98287 0.94721 1.21688 1.00655 0.95670 0.97688 1.20722 0.78609 0.83727 0.84842 1.90904 1.34834 1.23747 1.86315 1.55434 1.60919 1.42980 1.22743 1.06686 0.79838 0.74455 0.72462 1.93585 1.77778 1.72844 1.50462 1.93594 1.82498 1.33249 1.83547 1.30337 1.18568 1.10516 1.11597 1.18986 0.97438 0.95947 0.88586 1.20977 0.90132 1.35699 1.09031 0.91978 1.25070 0.99313 0.94875 0.95238 1.69956 1.35876 1.35335 1.11691 0.86444 0.84594 0.77782 0.78325 1.20473 1.20975 1.19710 0.91550 0.91966 0.90781 0.90760 0.90516 0.90779 0.91877 0.91776 0.92145 0.92198 0.92013 0.92358 0.92169 0.92138 0.91693 0.91794 0.73775 0.85096 0.86103 0.94784 0.94595 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 8.78 37.16 0.33 -0.69 16 2 C -0.11 -0.97 2.61 -91.77 -0.24 -1.21 16 3 H 0.11 0.69 6.36 -51.93 -0.33 0.36 16 4 C -0.10 -0.91 3.49 -26.73 -0.09 -1.00 16 5 C -0.09 -0.59 2.07 -90.62 -0.19 -0.78 16 6 C -0.12 -0.80 5.20 -26.73 -0.14 -0.94 16 7 C -0.12 -0.73 5.92 -26.73 -0.16 -0.89 16 8 C -0.12 -0.73 5.92 -26.73 -0.16 -0.88 16 9 C -0.12 -0.70 5.92 -26.73 -0.16 -0.86 16 10 C -0.12 -0.77 4.98 -26.73 -0.13 -0.91 16 11 C 0.53 7.01 6.89 -10.99 -0.08 6.93 16 12 O -0.49 -8.44 14.01 -11.57 -0.16 -8.60 16 13 N -1.06 -13.41 5.46 31.22 0.17 -13.24 16 14 S 2.57 47.00 5.11 -107.50 -0.55 46.45 16 15 O -0.96 -19.05 18.08 -57.54 -1.04 -20.09 16 16 O -0.94 -20.78 17.04 -64.79 -1.10 -21.88 16 17 C -0.58 -11.54 5.82 37.16 0.22 -11.32 16 18 C 0.03 0.77 4.98 -27.89 -0.14 0.64 16 19 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 20 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 23 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 26 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.37 7.41 -51.93 -0.38 -0.02 16 29 H 0.07 0.37 6.73 -51.93 -0.35 0.02 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.78 7.94 -51.93 -0.41 0.37 16 32 H 0.07 0.46 6.45 -51.93 -0.33 0.12 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.37 6.48 -51.93 -0.34 0.03 16 43 H 0.43 3.61 8.14 -34.47 -0.28 3.33 16 44 H 0.13 2.59 7.19 -51.92 -0.37 2.21 16 45 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 46 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 387.74 15.07 5.84 5.84 Total: -1.00 -36.36 387.74 -10.74 -47.09 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -8.26 Total: -0.72 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: -1.35 Total: -25.28 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.91 Total: -39.27 kcal Atomic # 8 Polarization: -48.27 SS G_CDS: -2.31 Total: -50.58 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 47.00 SS G_CDS: -0.55 Total: 46.45 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.36 -10.74 -47.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181274207.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.319 kcal (2) G-P(sol) polarization free energy of solvation -36.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds