Wall clock time and date at job start Tue Mar 31 2020 17:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46801 * 2 1 4 4 C 1.52995 * 109.47344 * 239.99851 * 2 1 3 5 5 C 1.53007 * 109.47384 * 65.56661 * 4 2 1 6 6 C 1.52994 * 109.47261 * 185.90938 * 5 4 2 7 7 C 1.52999 * 109.46843 * 180.02562 * 6 5 4 8 8 C 1.53008 * 109.47262 * 60.00276 * 7 6 5 9 9 C 1.53001 * 109.46745 * 299.99833 * 8 7 6 10 10 C 1.52995 * 109.47317 * 59.99802 * 9 8 7 11 11 C 1.50697 * 109.46985 * 119.99584 * 2 1 3 12 12 O 1.21281 * 120.00012 * 120.00225 * 11 2 1 13 13 N 1.34777 * 120.00225 * 299.99827 * 11 2 1 14 14 S 1.65602 * 120.00055 * 179.97438 * 13 11 2 15 15 O 1.42093 * 104.27758 * 181.07328 * 14 13 11 16 16 O 1.42098 * 104.27832 * 308.93738 * 14 13 11 17 17 C 1.81402 * 104.44473 * 65.00584 * 14 13 11 18 18 C 1.52996 * 109.47280 * 179.97438 * 17 14 13 19 19 C 1.50694 * 109.47336 * 179.97438 * 18 17 14 20 20 H 1.07997 * 120.00576 * 0.02562 * 19 18 17 21 21 C 1.37881 * 120.00090 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99835 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99969 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47125 * 90.00807 * 23 21 19 25 25 H 1.48512 * 109.47007 * 210.00424 * 23 21 19 26 26 H 1.48493 * 109.47522 * 330.00422 * 23 21 19 27 27 H 1.08994 * 109.47360 * 174.39310 * 1 2 3 28 28 H 1.09001 * 109.47191 * 294.39514 * 1 2 3 29 29 H 1.09007 * 109.46975 * 54.39628 * 1 2 3 30 30 H 1.09007 * 109.47091 * 305.57495 * 4 2 1 31 31 H 1.08997 * 109.47759 * 185.57015 * 4 2 1 32 32 H 1.09003 * 109.46721 * 305.91453 * 5 4 2 33 33 H 1.09000 * 109.47528 * 60.00367 * 6 5 4 34 34 H 1.09003 * 109.46933 * 299.99989 * 6 5 4 35 35 H 1.09001 * 109.47309 * 300.00195 * 7 6 5 36 36 H 1.08999 * 109.47304 * 179.97438 * 7 6 5 37 37 H 1.08992 * 109.47136 * 59.99775 * 8 7 6 38 38 H 1.09000 * 109.46750 * 179.97438 * 8 7 6 39 39 H 1.09003 * 109.46876 * 180.02562 * 9 8 7 40 40 H 1.09003 * 109.46893 * 300.00107 * 9 8 7 41 41 H 1.09001 * 109.46983 * 59.99764 * 10 9 8 42 42 H 1.08999 * 109.47517 * 180.02562 * 10 9 8 43 43 H 0.97003 * 120.00147 * 0.02562 * 13 11 2 44 44 H 1.09000 * 109.47413 * 300.00292 * 17 14 13 45 45 H 1.09006 * 109.47210 * 59.99518 * 17 14 13 46 46 H 1.09006 * 109.47237 * 300.00118 * 18 17 14 47 47 H 1.09006 * 109.47195 * 59.99751 * 18 17 14 48 48 H 0.96999 * 119.99832 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6475 0.0762 -2.4946 6 6 2.0267 -0.7156 -3.7476 7 6 1.6348 0.0822 -4.9930 8 6 2.3732 1.4223 -4.9936 9 6 1.9941 2.2140 -3.7404 10 6 2.3859 1.4163 -2.4951 11 6 2.0323 -0.7103 1.2305 12 8 2.7296 -1.6964 1.1193 13 7 1.7067 -0.2498 2.4546 14 16 2.2582 -1.0307 3.8068 15 8 1.7051 -0.2928 4.8877 16 8 1.9079 -2.3912 3.5931 17 6 4.0590 -0.8204 3.7480 18 6 4.6925 -1.5063 4.9600 19 6 6.1885 -1.3321 4.9109 20 1 6.6423 -0.7865 4.0968 21 6 6.9781 -1.8686 5.9058 22 7 6.4256 -2.5327 6.8975 23 14 8.8327 -1.6533 5.8445 24 1 9.2103 -0.4078 6.5595 25 1 9.4878 -2.8160 6.4959 26 1 9.2743 -1.5650 4.4295 27 1 -0.3634 -1.0227 -0.1004 28 1 -0.3633 0.4245 0.9359 29 1 -0.3633 0.5983 -0.8356 30 1 1.5975 -1.7161 -1.3005 31 1 3.1254 -0.8085 -1.2008 32 1 0.5721 0.2536 -2.4884 33 1 1.5010 -1.6704 -3.7471 34 1 3.1022 -0.8929 -3.7537 35 1 0.5594 0.2600 -4.9870 36 1 1.9053 -0.4816 -5.8857 37 1 3.4486 1.2445 -4.9995 38 1 2.0943 1.9904 -5.8810 39 1 2.5198 3.1689 -3.7411 40 1 0.9186 2.3917 -3.7346 41 1 3.4613 1.2385 -2.5010 42 1 2.1154 1.9801 -1.6024 43 1 1.1488 0.5387 2.5436 44 1 4.4474 -1.2676 2.8329 45 1 4.3015 0.2422 3.7643 46 1 4.3041 -1.0587 5.8749 47 1 4.4500 -2.5689 4.9441 48 1 6.9811 -2.9103 7.5972 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181274207.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:37 Heat of formation + Delta-G solvation = -186.092599 kcal Electronic energy + Delta-G solvation = -27006.653334 eV Core-core repulsion = 23185.737271 eV Total energy + Delta-G solvation = -3820.916063 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.52994 -39.59522 -38.30784 -37.23930 -36.05384 -35.89607 -35.45591 -33.19726 -31.73435 -31.39028 -27.67160 -27.22327 -25.51377 -23.70021 -23.45410 -22.56842 -21.10086 -20.68994 -20.35998 -19.31904 -18.74607 -18.31407 -17.38357 -16.76267 -16.56873 -16.50476 -16.31449 -15.74630 -15.51495 -15.22237 -14.89685 -14.85501 -14.51102 -14.24018 -14.13906 -13.82258 -13.73951 -13.38485 -13.29309 -13.24191 -13.01504 -12.96110 -12.86051 -12.79932 -12.67714 -12.32952 -12.26262 -12.15593 -12.03354 -11.95118 -11.90207 -11.75883 -11.56994 -11.30551 -11.12384 -11.01482 -10.82679 -10.72377 -10.67098 -8.29032 -6.43282 -1.00588 1.02964 1.38893 1.41432 1.44281 1.52715 2.35578 2.55872 3.00569 3.04422 3.25196 3.64577 3.80152 3.84511 3.97262 4.00507 4.02967 4.06782 4.14939 4.35262 4.39772 4.53742 4.59976 4.66793 4.69911 4.70989 4.73694 4.82309 4.90100 4.96239 5.02914 5.15268 5.20038 5.21249 5.22873 5.26106 5.32873 5.35634 5.40707 5.45770 5.49219 5.57442 5.64464 5.70516 5.72145 6.01852 6.46551 6.69273 7.26702 8.83481 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014160 B = 0.002746 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.960204 B =10193.030834 C =11510.520829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.103 4.103 3 H 0.142 0.858 4 C -0.102 4.102 5 C -0.078 4.078 6 C -0.118 4.118 7 C -0.116 4.116 8 C -0.122 4.122 9 C -0.117 4.117 10 C -0.121 4.121 11 C 0.531 3.469 12 O -0.532 6.532 13 N -1.036 6.036 14 S 2.599 3.401 15 O -0.972 6.972 16 O -0.980 6.980 17 C -0.579 4.579 18 C 0.023 3.977 19 C -0.541 4.541 20 H 0.074 0.926 21 C -0.003 4.003 22 N -0.933 5.933 23 Si 0.976 3.024 24 H -0.266 1.266 25 H -0.282 1.282 26 H -0.261 1.261 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.077 0.923 43 H 0.450 0.550 44 H 0.132 0.868 45 H 0.152 0.848 46 H 0.015 0.985 47 H 0.003 0.997 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.270 13.239 -24.354 30.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.126 4.126 3 H 0.159 0.841 4 C -0.140 4.140 5 C -0.097 4.097 6 C -0.156 4.156 7 C -0.154 4.154 8 C -0.160 4.160 9 C -0.155 4.155 10 C -0.158 4.158 11 C 0.320 3.680 12 O -0.406 6.406 13 N -0.804 5.804 14 S 2.698 3.302 15 O -0.962 6.962 16 O -0.970 6.970 17 C -0.712 4.712 18 C -0.016 4.016 19 C -0.580 4.580 20 H 0.092 0.908 21 C -0.202 4.202 22 N -0.572 5.572 23 Si 0.799 3.201 24 H -0.191 1.191 25 H -0.207 1.207 26 H -0.185 1.185 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.120 0.880 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.290 0.710 44 H 0.151 0.849 45 H 0.170 0.830 46 H 0.034 0.966 47 H 0.022 0.978 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.337 11.981 -23.673 29.696 hybrid contribution 1.288 0.015 0.377 1.343 sum -12.048 11.996 -23.296 28.841 Atomic orbital electron populations 1.21956 0.90515 1.03485 1.04872 1.21639 0.99487 1.02102 0.89392 0.84073 1.21547 1.01124 0.98814 0.92545 1.21172 1.01286 0.94663 0.92552 1.21592 1.00878 0.98494 0.94616 1.21511 1.00620 0.96009 0.97253 1.21562 0.99937 0.96209 0.98295 1.21520 1.01749 0.98160 0.94041 1.21709 0.99874 0.95511 0.98718 1.21728 0.77466 0.83151 0.85675 1.90898 1.37028 1.25996 1.86650 1.54876 1.60818 1.43591 1.21117 1.05369 0.78467 0.73543 0.72866 1.93557 1.77505 1.72925 1.52200 1.93543 1.82669 1.36225 1.84579 1.30238 1.20516 1.11740 1.08684 1.18821 0.97611 0.94571 0.90605 1.21471 0.91398 1.35720 1.09413 0.90810 1.26134 1.05012 0.94334 0.94719 1.70098 1.38032 1.36465 1.12633 0.85280 0.77753 0.78079 0.78949 1.19129 1.20719 1.18457 0.92765 0.90572 0.88013 0.92294 0.92425 0.89174 0.92245 0.93054 0.91355 0.92211 0.92898 0.91657 0.91833 0.91169 0.92937 0.90425 0.70968 0.84934 0.83016 0.96639 0.97832 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.78 71.98 0.63 -0.90 16 2 C -0.10 -1.50 2.61 -11.54 -0.03 -1.53 16 3 H 0.14 1.18 6.36 -2.39 -0.02 1.17 16 4 C -0.10 -1.70 3.49 30.59 0.11 -1.60 16 5 C -0.08 -0.90 2.07 -10.79 -0.02 -0.92 16 6 C -0.12 -1.53 5.20 30.59 0.16 -1.38 16 7 C -0.12 -1.23 5.92 30.60 0.18 -1.05 16 8 C -0.12 -1.25 5.92 30.60 0.18 -1.07 16 9 C -0.12 -1.06 5.92 30.59 0.18 -0.88 16 10 C -0.12 -1.25 4.98 30.59 0.15 -1.09 16 11 C 0.53 13.21 6.89 87.66 0.60 13.82 16 12 O -0.53 -18.59 14.01 13.35 0.19 -18.41 16 13 N -1.04 -24.40 5.46 -173.53 -0.95 -25.35 16 14 S 2.60 95.16 5.11 -56.49 -0.29 94.87 16 15 O -0.97 -38.24 18.08 -127.65 -2.31 -40.55 16 16 O -0.98 -44.50 17.04 -120.72 -2.06 -46.56 16 17 C -0.58 -23.35 5.82 71.98 0.42 -22.94 16 18 C 0.02 1.24 4.98 29.84 0.15 1.39 16 19 C -0.54 -30.90 9.11 25.60 0.23 -30.67 16 20 H 0.07 3.92 7.74 -2.91 -0.02 3.90 16 21 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 22 N -0.93 -57.59 13.29 21.45 0.28 -57.31 16 23 Si 0.98 44.11 29.54 68.60 2.03 46.14 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.08 0.58 7.41 -2.39 -0.02 0.57 16 29 H 0.10 0.53 6.73 -2.38 -0.02 0.51 16 30 H 0.06 1.15 8.14 -2.38 -0.02 1.14 16 31 H 0.06 1.18 7.94 -2.39 -0.02 1.16 16 32 H 0.09 0.78 6.45 -2.39 -0.02 0.77 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.08 0.59 6.48 -2.39 -0.02 0.57 16 43 H 0.45 6.21 8.14 -96.74 -0.79 5.42 16 44 H 0.13 5.31 7.19 -2.39 -0.02 5.29 16 45 H 0.15 5.04 8.14 -2.39 -0.02 5.02 16 46 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 47 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 48 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -81.64 387.74 0.46 -81.18 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.15 Total: 14.53 kcal Atomic # 6 Polarization: -51.96 SS G_CDS: 3.41 Total: -48.55 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -0.66 Total: -82.65 kcal Atomic # 8 Polarization: -101.34 SS G_CDS: -4.18 Total: -105.51 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 95.16 SS G_CDS: -0.29 Total: 94.87 kcal Total: -81.64 0.46 -81.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181274207.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.912 kcal (2) G-P(sol) polarization free energy of solvation -81.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds