Wall clock time and date at job start Tue Mar 31 2020 17:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 117.00065 * 2 1 4 4 O 1.20828 * 120.00110 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99580 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.45969 * 300.02190 * 5 3 2 7 7 C 1.53036 * 109.46318 * 60.00098 * 5 3 2 8 8 C 1.53196 * 109.31127 * 181.37263 * 7 5 3 9 9 N 1.46920 * 108.77600 * 305.36026 * 8 7 5 10 10 C 1.34773 * 120.63420 * 233.59255 * 9 8 7 11 11 O 1.21550 * 120.00272 * 183.91152 * 10 9 8 12 12 C 1.47885 * 119.99863 * 4.18495 * 10 9 8 13 13 C 1.39918 * 120.02563 * 313.94707 * 12 10 9 14 14 C 1.38336 * 120.36012 * 179.71376 * 13 12 10 15 15 C 1.37751 * 120.40987 * 0.56354 * 14 13 12 16 16 C 1.40757 * 120.03881 * 359.71769 * 15 14 13 17 17 C 1.41434 * 120.17565 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99930 * 330.78717 * 17 16 15 19 19 C 1.39938 * 120.00049 * 150.78656 * 17 16 15 20 20 N 1.30833 * 119.99658 * 349.33948 * 19 17 16 21 21 Si 1.86802 * 120.00290 * 169.33849 * 19 17 16 22 22 H 1.48493 * 109.46732 * 59.99929 * 21 19 17 23 23 H 1.48500 * 109.46891 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46871 * 300.00006 * 21 19 17 25 25 C 1.38998 * 120.02762 * 134.22351 * 12 10 9 26 26 C 1.46928 * 118.73951 * 53.85991 * 9 8 7 27 27 C 1.53040 * 109.44581 * 180.02562 * 5 3 2 28 28 H 1.09005 * 109.49625 * 58.67064 * 27 5 3 29 29 C 1.52995 * 109.50145 * 298.57219 * 27 5 3 30 30 H 1.09002 * 109.47367 * 300.00606 * 1 2 3 31 31 H 1.09008 * 109.46945 * 59.99808 * 1 2 3 32 32 H 1.08993 * 109.47332 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.49741 * 61.41715 * 7 5 3 34 34 H 1.09006 * 109.49429 * 301.31686 * 7 5 3 35 35 H 1.09005 * 109.58176 * 185.57863 * 8 7 5 36 36 H 1.08997 * 109.70605 * 65.22056 * 8 7 5 37 37 H 1.08005 * 119.81985 * 0.02562 * 13 12 10 38 38 H 1.07998 * 119.79541 * 180.27734 * 14 13 12 39 39 H 1.07998 * 119.98289 * 179.69192 * 15 14 13 40 40 H 0.96998 * 119.99983 * 180.02562 * 20 19 17 41 41 H 1.08003 * 120.19803 * 0.02562 * 25 12 10 42 42 H 1.09002 * 109.58445 * 65.92740 * 26 9 8 43 43 H 1.08995 * 109.59234 * 186.35480 * 26 9 8 44 44 H 1.09006 * 109.47132 * 59.99946 * 29 27 5 45 45 H 1.08997 * 109.47516 * 179.97438 * 29 27 5 46 46 H 1.08997 * 109.46761 * 300.00079 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5663 1.2747 -0.0006 6 1 3.9562 0.7800 0.8890 7 6 4.1128 0.5812 -1.2506 8 6 5.6437 0.6332 -1.2304 9 7 6.0674 2.0322 -1.0828 10 6 6.9334 2.5833 -1.9561 11 8 7.3313 3.7187 -1.7831 12 6 7.3950 1.8087 -3.1283 13 6 7.8094 0.4815 -2.9713 14 6 8.2369 -0.2513 -4.0640 15 6 8.2705 0.3201 -5.3169 16 6 7.8630 1.6558 -5.4933 17 6 7.8968 2.2456 -6.7784 18 1 8.6222 1.9132 -7.5062 19 6 6.9904 3.2599 -7.1068 20 7 5.9838 3.5201 -6.3125 21 14 7.2176 4.2426 -8.6792 22 1 7.1692 3.3263 -9.8467 23 1 6.1327 5.2499 -8.7944 24 1 8.5320 4.9329 -8.6458 25 6 7.4229 2.4002 -4.3858 26 6 5.5337 2.8174 0.0385 27 6 3.9997 2.7425 0.0002 28 1 3.5907 3.2421 0.8784 29 6 3.4823 3.4285 -1.2657 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.7430 1.0908 -2.1403 34 1 3.7842 -0.4581 -1.2629 35 1 6.0353 0.2295 -2.1642 36 1 6.0204 0.0469 -0.3923 37 1 7.7908 0.0252 -1.9926 38 1 8.5506 -1.2764 -3.9331 39 1 8.6102 -0.2568 -6.1643 40 1 5.3553 4.2229 -6.5403 41 1 7.1085 3.4259 -4.5107 42 1 5.8995 2.4061 0.9794 43 1 5.8527 3.8552 -0.0575 44 1 2.3941 3.3712 -1.2911 45 1 3.7908 4.4739 -1.2645 46 1 3.8930 2.9291 -2.1432 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187884174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:06 Heat of formation + Delta-G solvation = -99.718727 kcal Electronic energy + Delta-G solvation = -29217.433871 eV Core-core repulsion = 25264.819308 eV Total energy + Delta-G solvation = -3952.614562 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.05849 -39.76345 -37.78948 -36.91460 -36.38358 -33.90395 -33.16826 -31.84254 -30.10287 -29.50643 -28.38902 -26.88712 -25.93679 -25.37102 -22.97538 -22.47698 -21.36295 -20.95236 -19.54623 -18.52329 -17.77988 -17.57387 -16.74350 -16.49207 -15.85410 -15.68697 -15.17142 -15.01347 -14.83472 -14.51681 -14.04688 -13.86875 -13.60448 -13.51673 -13.13324 -12.87281 -12.63611 -12.57982 -12.35709 -12.29706 -11.92069 -11.68239 -11.61232 -11.45467 -11.18608 -11.14973 -11.10156 -10.88312 -10.70815 -10.56874 -10.53997 -10.42211 -10.17501 -10.07472 -9.72299 -9.27522 -8.99022 -8.30613 -7.61922 -7.47282 -6.78255 -4.46321 2.07983 2.31695 2.56503 2.79267 3.06572 3.08416 3.13017 3.36139 3.67712 3.91197 4.40106 4.56717 4.63696 4.67441 4.89645 4.97036 5.00236 5.07170 5.20758 5.30752 5.32196 5.47170 5.52608 5.59742 5.64984 5.76397 5.88137 5.96310 6.03550 6.08908 6.10406 6.16479 6.23610 6.26579 6.38392 6.62586 6.66892 6.89223 6.95594 7.01547 7.19065 7.35762 7.63171 7.63983 7.75398 7.83646 7.96865 8.13755 8.47382 8.78668 8.79558 8.83928 10.16310 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.013144 B = 0.003514 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.810050 B = 7965.999897 C = 8491.444518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.466 3.534 4 O -0.501 6.501 5 C -0.074 4.074 6 H 0.108 0.892 7 C -0.130 4.130 8 C 0.095 3.905 9 N -0.612 5.612 10 C 0.574 3.426 11 O -0.548 6.548 12 C -0.121 4.121 13 C -0.220 4.220 14 C -0.098 4.098 15 C -0.209 4.209 16 C 0.104 3.896 17 C -0.461 4.461 18 H 0.080 0.920 19 C 0.073 3.927 20 N -0.798 5.798 21 Si 0.913 3.087 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.263 1.263 25 C -0.095 4.095 26 C 0.118 3.882 27 C -0.087 4.087 28 H 0.085 0.915 29 C -0.157 4.157 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.124 0.876 36 H 0.065 0.935 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.283 0.717 41 H 0.128 0.872 42 H 0.064 0.936 43 H 0.097 0.903 44 H 0.071 0.929 45 H 0.055 0.945 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.404 -7.024 11.624 15.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.309 3.691 4 O -0.388 6.388 5 C -0.093 4.093 6 H 0.126 0.874 7 C -0.168 4.168 8 C -0.027 4.027 9 N -0.346 5.346 10 C 0.366 3.634 11 O -0.425 6.425 12 C -0.124 4.124 13 C -0.240 4.240 14 C -0.116 4.116 15 C -0.229 4.229 16 C 0.102 3.898 17 C -0.491 4.491 18 H 0.098 0.902 19 C -0.144 4.144 20 N -0.423 5.423 21 Si 0.737 3.263 22 H -0.190 1.190 23 H -0.203 1.203 24 H -0.188 1.188 25 C -0.115 4.115 26 C -0.005 4.005 27 C -0.106 4.106 28 H 0.103 0.897 29 C -0.214 4.214 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.118 0.882 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.141 0.859 36 H 0.083 0.917 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.094 0.906 41 H 0.146 0.854 42 H 0.082 0.918 43 H 0.115 0.885 44 H 0.090 0.910 45 H 0.074 0.926 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.638 -5.946 11.724 15.730 hybrid contribution -0.415 0.401 -0.591 0.826 sum -9.053 -5.545 11.133 15.383 Atomic orbital electron populations 1.23248 0.76603 1.03576 1.02476 1.86519 1.23221 1.33685 1.84104 1.23897 0.92098 0.81179 0.71911 1.90622 1.67212 1.36137 1.44866 1.21168 0.86638 0.99384 1.02117 0.87403 1.22030 0.96889 1.01285 0.96594 1.22233 0.92927 0.82516 1.05067 1.47959 1.45870 1.12563 1.28224 1.18930 0.77068 0.85799 0.81652 1.90685 1.57275 1.19229 1.75329 1.19427 1.05489 0.94573 0.92924 1.20422 1.11954 0.94109 0.97483 1.20456 1.00206 0.97746 0.93236 1.21158 1.10525 0.95358 0.95833 1.17572 0.89068 0.90264 0.92942 1.19552 1.15140 1.16100 0.98261 0.90215 1.25911 0.93811 0.96056 0.98661 1.69737 1.09807 1.26563 1.36241 0.86285 0.79104 0.79509 0.81372 1.18995 1.20283 1.18783 1.21496 1.00840 0.99959 0.89214 1.21646 0.91366 0.98512 0.88966 1.21449 0.95691 0.92687 1.00788 0.89698 1.22025 1.02139 1.00458 0.96750 0.92070 0.91884 0.88185 0.90066 0.89576 0.85885 0.91688 0.88420 0.88773 0.88585 0.90632 0.85435 0.91804 0.88513 0.91005 0.92554 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.94 10.44 -39.26 -0.41 -4.35 16 3 C 0.47 5.77 6.97 36.00 0.25 6.02 16 4 O -0.50 -7.36 13.50 -18.75 -0.25 -7.61 16 5 C -0.07 -0.84 2.37 -91.73 -0.22 -1.05 16 6 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 7 C -0.13 -1.58 4.96 -26.61 -0.13 -1.71 16 8 C 0.10 1.29 5.20 -3.71 -0.02 1.27 16 9 N -0.61 -10.08 2.40 -173.60 -0.42 -10.50 16 10 C 0.57 12.27 7.29 -12.31 -0.09 12.18 16 11 O -0.55 -13.38 16.41 5.32 0.09 -13.29 16 12 C -0.12 -2.75 5.17 -105.04 -0.54 -3.29 16 13 C -0.22 -4.41 7.32 -38.92 -0.28 -4.69 16 14 C -0.10 -1.99 10.01 -39.72 -0.40 -2.39 16 15 C -0.21 -4.79 9.78 -38.81 -0.38 -5.17 16 16 C 0.10 2.68 5.54 -106.87 -0.59 2.08 16 17 C -0.46 -11.91 9.06 -37.73 -0.34 -12.25 16 18 H 0.08 1.96 7.87 -52.48 -0.41 1.55 16 19 C 0.07 1.82 5.25 -17.34 -0.09 1.72 16 20 N -0.80 -20.58 10.87 55.55 0.60 -19.98 16 21 Si 0.91 18.69 29.57 -169.99 -5.03 13.67 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 23 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 25 C -0.09 -2.45 8.29 -38.44 -0.32 -2.77 16 26 C 0.12 1.65 5.86 -3.48 -0.02 1.63 16 27 C -0.09 -1.11 2.36 -90.27 -0.21 -1.32 16 28 H 0.08 1.00 8.07 -51.93 -0.42 0.58 16 29 C -0.16 -2.41 8.41 37.16 0.31 -2.10 16 30 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 31 H 0.06 0.54 8.13 -51.92 -0.42 0.12 16 32 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 1.18 6.33 -51.93 -0.33 0.85 16 34 H 0.09 0.89 8.09 -51.93 -0.42 0.47 16 35 H 0.12 1.92 4.23 -51.93 -0.22 1.70 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 1.67 6.58 -52.48 -0.35 1.32 16 38 H 0.09 1.61 8.06 -52.49 -0.42 1.18 16 39 H 0.10 2.06 8.06 -52.49 -0.42 1.63 16 40 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 41 H 0.13 3.59 6.25 -52.48 -0.33 3.26 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.10 1.53 7.02 -51.93 -0.36 1.17 16 44 H 0.07 1.12 5.64 -51.93 -0.29 0.83 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.06 1.09 5.97 -51.93 -0.31 0.78 16 LS Contribution 366.34 15.07 5.52 5.52 Total: -1.00 -30.14 366.34 -8.29 -38.43 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -6.38 Total: 8.60 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -2.01 Total: -10.48 kcal Atomic # 7 Polarization: -30.66 SS G_CDS: 0.19 Total: -30.48 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.58 Total: -25.25 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.14 -8.29 -38.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187884174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.294 kcal (2) G-P(sol) polarization free energy of solvation -30.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds