Wall clock time and date at job start Tue Mar 31 2020 17:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 117.00065 * 2 1 4 4 O 1.20828 * 120.00110 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99580 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.45969 * 300.02190 * 5 3 2 7 7 C 1.53036 * 109.46318 * 60.00098 * 5 3 2 8 8 C 1.53196 * 109.31127 * 181.37263 * 7 5 3 9 9 N 1.46920 * 108.77600 * 305.36026 * 8 7 5 10 10 C 1.34773 * 120.63420 * 233.59255 * 9 8 7 11 11 O 1.21550 * 120.00272 * 183.91152 * 10 9 8 12 12 C 1.47885 * 119.99863 * 4.18495 * 10 9 8 13 13 C 1.39918 * 120.02563 * 313.94707 * 12 10 9 14 14 C 1.38336 * 120.36012 * 179.71376 * 13 12 10 15 15 C 1.37751 * 120.40987 * 0.56354 * 14 13 12 16 16 C 1.40757 * 120.03881 * 359.71769 * 15 14 13 17 17 C 1.41434 * 120.17565 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99930 * 330.78717 * 17 16 15 19 19 C 1.39938 * 120.00049 * 150.78656 * 17 16 15 20 20 N 1.30833 * 119.99658 * 349.33948 * 19 17 16 21 21 Si 1.86802 * 120.00290 * 169.33849 * 19 17 16 22 22 H 1.48493 * 109.46732 * 59.99929 * 21 19 17 23 23 H 1.48500 * 109.46891 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46871 * 300.00006 * 21 19 17 25 25 C 1.38998 * 120.02762 * 134.22351 * 12 10 9 26 26 C 1.46928 * 118.73951 * 53.85991 * 9 8 7 27 27 C 1.53040 * 109.44581 * 180.02562 * 5 3 2 28 28 H 1.09005 * 109.49625 * 58.67064 * 27 5 3 29 29 C 1.52995 * 109.50145 * 298.57219 * 27 5 3 30 30 H 1.09002 * 109.47367 * 300.00606 * 1 2 3 31 31 H 1.09008 * 109.46945 * 59.99808 * 1 2 3 32 32 H 1.08993 * 109.47332 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.49741 * 61.41715 * 7 5 3 34 34 H 1.09006 * 109.49429 * 301.31686 * 7 5 3 35 35 H 1.09005 * 109.58176 * 185.57863 * 8 7 5 36 36 H 1.08997 * 109.70605 * 65.22056 * 8 7 5 37 37 H 1.08005 * 119.81985 * 0.02562 * 13 12 10 38 38 H 1.07998 * 119.79541 * 180.27734 * 14 13 12 39 39 H 1.07998 * 119.98289 * 179.69192 * 15 14 13 40 40 H 0.96998 * 119.99983 * 180.02562 * 20 19 17 41 41 H 1.08003 * 120.19803 * 0.02562 * 25 12 10 42 42 H 1.09002 * 109.58445 * 65.92740 * 26 9 8 43 43 H 1.08995 * 109.59234 * 186.35480 * 26 9 8 44 44 H 1.09006 * 109.47132 * 59.99946 * 29 27 5 45 45 H 1.08997 * 109.47516 * 179.97438 * 29 27 5 46 46 H 1.08997 * 109.46761 * 300.00079 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5663 1.2747 -0.0006 6 1 3.9562 0.7800 0.8890 7 6 4.1128 0.5812 -1.2506 8 6 5.6437 0.6332 -1.2304 9 7 6.0674 2.0322 -1.0828 10 6 6.9334 2.5833 -1.9561 11 8 7.3313 3.7187 -1.7831 12 6 7.3950 1.8087 -3.1283 13 6 7.8094 0.4815 -2.9713 14 6 8.2369 -0.2513 -4.0640 15 6 8.2705 0.3201 -5.3169 16 6 7.8630 1.6558 -5.4933 17 6 7.8968 2.2456 -6.7784 18 1 8.6222 1.9132 -7.5062 19 6 6.9904 3.2599 -7.1068 20 7 5.9838 3.5201 -6.3125 21 14 7.2176 4.2426 -8.6792 22 1 7.1692 3.3263 -9.8467 23 1 6.1327 5.2499 -8.7944 24 1 8.5320 4.9329 -8.6458 25 6 7.4229 2.4002 -4.3858 26 6 5.5337 2.8174 0.0385 27 6 3.9997 2.7425 0.0002 28 1 3.5907 3.2421 0.8784 29 6 3.4823 3.4285 -1.2657 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.7430 1.0908 -2.1403 34 1 3.7842 -0.4581 -1.2629 35 1 6.0353 0.2295 -2.1642 36 1 6.0204 0.0469 -0.3923 37 1 7.7908 0.0252 -1.9926 38 1 8.5506 -1.2764 -3.9331 39 1 8.6102 -0.2568 -6.1643 40 1 5.3553 4.2229 -6.5403 41 1 7.1085 3.4259 -4.5107 42 1 5.8995 2.4061 0.9794 43 1 5.8527 3.8552 -0.0575 44 1 2.3941 3.3712 -1.2911 45 1 3.7908 4.4739 -1.2645 46 1 3.8930 2.9291 -2.1432 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187884174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:05 Heat of formation + Delta-G solvation = -116.008827 kcal Electronic energy + Delta-G solvation = -29218.140262 eV Core-core repulsion = 25264.819308 eV Total energy + Delta-G solvation = -3953.320954 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.10827 -41.11308 -39.21602 -38.46692 -37.44368 -35.65264 -34.56904 -32.97297 -31.81762 -31.28619 -29.26819 -28.06532 -27.23815 -27.03643 -24.12628 -23.97955 -22.77552 -22.38428 -20.97403 -19.75681 -19.31857 -18.60410 -17.93421 -17.63799 -17.30047 -17.02941 -16.63720 -16.57937 -16.34979 -15.73337 -15.34122 -15.10164 -14.85305 -14.70884 -14.51841 -14.43375 -14.16747 -13.84840 -13.71397 -13.47302 -13.19477 -12.95143 -12.91168 -12.83282 -12.76364 -12.72420 -12.33288 -12.23092 -12.12065 -11.93580 -11.76649 -11.60205 -11.59134 -11.47133 -11.24763 -11.09048 -10.65245 -9.68184 -9.35562 -9.28184 -8.61793 -6.39612 0.55640 1.02401 1.14355 1.35377 1.46935 1.48097 1.72789 1.83752 2.16421 2.19968 2.76084 3.39578 3.61062 3.66236 3.73631 3.80745 3.96988 4.13788 4.18570 4.31825 4.33072 4.35337 4.48221 4.49519 4.61814 4.65999 4.67810 4.72145 4.74668 4.82387 4.91308 4.91802 5.03772 5.04798 5.09434 5.10622 5.22341 5.31001 5.34128 5.46559 5.53505 5.65794 5.86932 5.97238 6.05972 6.29969 6.39201 6.62749 6.72413 6.90555 6.95816 7.23032 8.33889 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.013144 B = 0.003514 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.810050 B = 7965.999897 C = 8491.444518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.468 3.532 4 O -0.532 6.532 5 C -0.068 4.068 6 H 0.151 0.849 7 C -0.123 4.123 8 C 0.090 3.910 9 N -0.600 5.600 10 C 0.566 3.434 11 O -0.593 6.593 12 C -0.129 4.129 13 C -0.193 4.193 14 C -0.094 4.094 15 C -0.214 4.214 16 C 0.071 3.929 17 C -0.500 4.500 18 H 0.081 0.919 19 C 0.029 3.971 20 N -0.837 5.837 21 Si 0.981 3.019 22 H -0.253 1.253 23 H -0.274 1.274 24 H -0.262 1.262 25 C -0.131 4.131 26 C 0.116 3.884 27 C -0.080 4.080 28 H 0.103 0.897 29 C -0.151 4.151 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.132 0.868 33 H 0.046 0.954 34 H 0.115 0.885 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.108 0.892 40 H 0.283 0.717 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.040 0.960 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.546 -10.383 14.063 19.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.312 3.688 4 O -0.421 6.421 5 C -0.086 4.086 6 H 0.168 0.832 7 C -0.161 4.161 8 C -0.031 4.031 9 N -0.332 5.332 10 C 0.357 3.643 11 O -0.475 6.475 12 C -0.132 4.132 13 C -0.212 4.212 14 C -0.111 4.111 15 C -0.234 4.234 16 C 0.069 3.931 17 C -0.530 4.530 18 H 0.099 0.901 19 C -0.184 4.184 20 N -0.464 5.464 21 Si 0.802 3.198 22 H -0.176 1.176 23 H -0.198 1.198 24 H -0.187 1.187 25 C -0.151 4.151 26 C -0.006 4.006 27 C -0.099 4.099 28 H 0.121 0.879 29 C -0.208 4.208 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.150 0.850 33 H 0.065 0.935 34 H 0.133 0.867 35 H 0.121 0.879 36 H 0.131 0.869 37 H 0.159 0.841 38 H 0.159 0.841 39 H 0.126 0.874 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.126 0.874 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.059 0.941 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.807 -9.373 14.189 19.151 hybrid contribution -0.438 1.279 -1.179 1.793 sum -9.244 -8.095 13.010 17.895 Atomic orbital electron populations 1.23521 0.75127 1.05640 1.02247 1.86500 1.24658 1.32662 1.83587 1.24054 0.92470 0.81183 0.71092 1.90621 1.67921 1.37206 1.46370 1.21166 0.86167 0.98009 1.03284 0.83193 1.21952 0.95828 1.02670 0.95697 1.22480 0.93852 0.80819 1.05962 1.47995 1.43841 1.13962 1.27392 1.18850 0.78132 0.85212 0.82136 1.90653 1.59491 1.20930 1.76452 1.19703 1.05113 0.96029 0.92400 1.20907 1.08364 0.92438 0.99495 1.20938 0.98610 0.99743 0.91859 1.21446 1.09773 0.94382 0.97792 1.17892 0.90335 0.91833 0.93013 1.19826 1.16255 1.18015 0.98905 0.90063 1.26753 0.93114 0.96686 1.01816 1.69857 1.10866 1.27439 1.38192 0.85266 0.78857 0.78081 0.77636 1.17648 1.19847 1.18693 1.21250 1.03850 0.98824 0.91190 1.21858 0.91937 0.97263 0.89503 1.21383 0.94744 0.94143 0.99599 0.87867 1.21941 1.01745 0.99630 0.97476 0.91698 0.92812 0.85003 0.93480 0.86699 0.87858 0.86888 0.84066 0.84069 0.87419 0.90712 0.89367 0.87446 0.91134 0.91398 0.94105 0.94777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.59 16 2 O -0.36 -6.74 10.44 -51.42 -0.54 -7.28 16 3 C 0.47 10.43 6.97 71.24 0.50 10.93 16 4 O -0.53 -15.02 13.50 21.96 0.30 -14.72 16 5 C -0.07 -1.28 2.37 -11.52 -0.03 -1.31 16 6 H 0.15 1.72 8.14 -2.39 -0.02 1.70 16 7 C -0.12 -2.64 4.96 30.67 0.15 -2.49 16 8 C 0.09 2.10 5.20 86.36 0.45 2.55 16 9 N -0.60 -18.82 2.40 -821.43 -1.97 -20.79 16 10 C 0.57 24.62 7.29 86.80 0.63 25.25 16 11 O -0.59 -30.48 16.41 -3.87 -0.06 -30.55 16 12 C -0.13 -5.97 5.17 -20.13 -0.10 -6.08 16 13 C -0.19 -7.21 7.32 22.70 0.17 -7.04 16 14 C -0.09 -3.52 10.01 22.18 0.22 -3.29 16 15 C -0.21 -9.74 9.78 22.77 0.22 -9.52 16 16 C 0.07 3.84 5.54 -21.32 -0.12 3.72 16 17 C -0.50 -27.26 9.06 23.47 0.21 -27.05 16 18 H 0.08 4.19 7.87 -2.91 -0.02 4.17 16 19 C 0.03 1.55 5.25 85.25 0.45 1.99 16 20 N -0.84 -46.53 10.87 21.83 0.24 -46.29 16 21 Si 0.98 40.17 29.57 68.60 2.03 42.20 16 22 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 23 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 24 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 25 C -0.13 -7.17 8.29 23.01 0.19 -6.98 16 26 C 0.12 3.01 5.86 86.51 0.51 3.52 16 27 C -0.08 -1.89 2.36 -10.57 -0.02 -1.92 16 28 H 0.10 2.16 8.07 -2.38 -0.02 2.14 16 29 C -0.15 -4.83 8.41 71.98 0.61 -4.22 16 30 H 0.06 0.88 8.13 -2.39 -0.02 0.86 16 31 H 0.05 0.86 8.13 -2.38 -0.02 0.84 16 32 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.05 1.35 6.33 -2.39 -0.02 1.33 16 34 H 0.11 1.85 8.09 -2.38 -0.02 1.83 16 35 H 0.10 2.87 4.23 -2.38 -0.01 2.86 16 36 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.14 4.06 6.58 -2.91 -0.02 4.04 16 38 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 39 H 0.11 4.53 8.06 -2.91 -0.02 4.51 16 40 H 0.28 14.63 8.30 -92.71 -0.77 13.86 16 41 H 0.09 5.47 6.25 -2.91 -0.02 5.45 16 42 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.07 2.25 7.02 -2.39 -0.02 2.23 16 44 H 0.07 2.21 5.64 -2.38 -0.01 2.20 16 45 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.03 1.26 5.97 -2.39 -0.01 1.25 16 Total: -1.00 -73.82 366.34 6.22 -67.60 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: 1.00 Total: 30.19 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: 5.23 Total: -20.35 kcal Atomic # 7 Polarization: -65.35 SS G_CDS: -1.73 Total: -67.08 kcal Atomic # 8 Polarization: -52.25 SS G_CDS: -0.30 Total: -52.55 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -73.82 6.22 -67.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187884174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.409 kcal (2) G-P(sol) polarization free energy of solvation -73.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds