Wall clock time and date at job start Tue Mar 31 2020 17:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34227 * 116.99827 * 2 1 4 4 O 1.20827 * 120.00090 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99809 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.44540 * 300.03859 * 5 3 2 7 7 C 1.53042 * 109.45913 * 60.00074 * 5 3 2 8 8 C 1.53189 * 109.33849 * 181.40040 * 7 5 3 9 9 N 1.46918 * 108.77628 * 305.35197 * 8 7 5 10 10 C 1.34780 * 120.63012 * 233.62553 * 9 8 7 11 11 O 1.21550 * 119.99874 * 174.21510 * 10 9 8 12 12 C 1.47887 * 120.00110 * 354.22787 * 10 9 8 13 13 C 1.39922 * 120.01954 * 324.48836 * 12 10 9 14 14 C 1.38332 * 120.35458 * 179.74115 * 13 12 10 15 15 C 1.37748 * 120.41200 * 0.56637 * 14 13 12 16 16 C 1.40754 * 120.04033 * 359.68957 * 15 14 13 17 17 C 1.41437 * 120.17501 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00547 * 330.74204 * 17 16 15 19 19 C 1.39939 * 119.99467 * 150.74333 * 17 16 15 20 20 N 1.30829 * 120.00312 * 349.38186 * 19 17 16 21 21 Si 1.86805 * 119.99722 * 169.37542 * 19 17 16 22 22 H 1.48498 * 109.46809 * 90.00369 * 21 19 17 23 23 H 1.48501 * 109.46850 * 210.00133 * 21 19 17 24 24 H 1.48501 * 109.47298 * 329.99979 * 21 19 17 25 25 C 1.38989 * 120.02853 * 144.77093 * 12 10 9 26 26 C 1.46924 * 118.73899 * 53.60853 * 9 8 7 27 27 C 1.53102 * 109.50519 * 180.02562 * 5 3 2 28 28 H 1.09000 * 109.51536 * 298.60104 * 27 5 3 29 29 C 1.52996 * 109.49315 * 58.67186 * 27 5 3 30 30 H 1.08997 * 109.46799 * 300.00165 * 1 2 3 31 31 H 1.09003 * 109.47141 * 59.99438 * 1 2 3 32 32 H 1.08998 * 109.47263 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.49419 * 61.43613 * 7 5 3 34 34 H 1.09000 * 109.49811 * 301.36979 * 7 5 3 35 35 H 1.09006 * 109.58700 * 65.14243 * 8 7 5 36 36 H 1.09001 * 109.58733 * 185.41588 * 8 7 5 37 37 H 1.07999 * 119.82628 * 0.02562 * 13 12 10 38 38 H 1.07998 * 119.79098 * 180.25739 * 14 13 12 39 39 H 1.08001 * 119.98115 * 179.71598 * 15 14 13 40 40 H 0.97000 * 120.00182 * 180.02562 * 20 19 17 41 41 H 1.07997 * 120.20469 * 359.94651 * 25 12 10 42 42 H 1.09004 * 109.58532 * 66.18389 * 26 9 8 43 43 H 1.09009 * 109.58686 * 186.45861 * 26 9 8 44 44 H 1.08998 * 109.47489 * 179.85599 * 29 27 5 45 45 H 1.09003 * 109.47095 * 299.86175 * 29 27 5 46 46 H 1.09005 * 109.46854 * 59.85360 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9554 0.7802 0.8906 7 6 4.1138 0.5808 -1.2487 8 6 5.6447 0.6319 -1.2278 9 7 6.0691 2.0307 -1.0805 10 6 6.9355 2.5811 -1.9540 11 8 7.1980 3.7659 -1.8849 12 6 7.5665 1.7435 -2.9969 13 6 7.9083 0.4160 -2.7165 14 6 8.4939 -0.3752 -3.6884 15 6 8.7579 0.1376 -4.9393 16 6 8.4259 1.4724 -5.2381 17 6 8.6951 2.0017 -6.5218 18 1 9.5239 1.6209 -7.1000 19 6 7.8875 3.0189 -7.0425 20 7 6.7687 3.3373 -6.4437 21 14 8.4070 3.9225 -8.5928 22 1 7.8603 3.2204 -9.7816 23 1 7.8841 5.3119 -8.5546 24 1 9.8894 3.9536 -8.6744 25 6 7.8257 2.2762 -4.2542 26 6 5.5310 2.8183 0.0370 27 6 4.0014 2.7428 0.0011 28 1 3.6336 3.2319 -0.9009 29 6 3.4270 3.4450 1.2330 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.7449 1.0902 -2.1390 34 1 3.7846 -0.4582 -1.2614 35 1 6.0184 0.0462 -0.3879 36 1 6.0367 0.2251 -2.1600 37 1 7.7098 0.0054 -1.7375 38 1 8.7503 -1.3999 -3.4635 39 1 9.2195 -0.4850 -5.6915 40 1 6.2087 4.0421 -6.8049 41 1 7.5668 3.3014 -4.4738 42 1 5.8955 2.4110 0.9800 43 1 5.8500 3.8561 -0.0603 44 1 3.7389 4.4894 1.2345 45 1 2.3386 3.3909 1.2077 46 1 3.7941 2.9549 2.1348 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187884200.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:11 Heat of formation + Delta-G solvation = -100.230409 kcal Electronic energy + Delta-G solvation = -28825.255059 eV Core-core repulsion = 24872.618309 eV Total energy + Delta-G solvation = -3952.636750 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.03968 -39.74470 -37.75748 -36.92821 -36.40424 -34.00517 -33.32256 -32.13182 -30.20655 -29.49794 -28.35019 -26.83053 -25.98904 -25.27695 -22.76803 -22.18755 -21.45673 -20.93890 -20.02494 -18.82578 -17.80739 -17.50085 -16.91602 -16.48938 -15.86228 -15.76907 -15.15799 -14.85112 -14.74367 -14.48117 -14.20260 -13.95961 -13.61391 -13.37507 -13.13125 -12.81731 -12.74263 -12.47946 -12.41825 -12.35396 -12.17390 -11.79559 -11.70963 -11.57860 -11.20971 -11.12450 -11.06085 -10.94094 -10.89254 -10.66444 -10.52633 -10.42874 -10.17467 -10.06566 -9.70404 -9.27453 -9.00369 -8.33214 -7.62878 -7.47064 -6.77640 -4.45630 2.04203 2.24885 2.53165 2.78615 3.07417 3.09706 3.13248 3.36246 3.71917 3.91810 4.35320 4.55198 4.62465 4.63763 4.87082 4.93410 4.94805 5.05558 5.23608 5.26532 5.28931 5.45715 5.47474 5.52390 5.55696 5.66615 5.74180 5.86736 5.98788 6.01390 6.06648 6.09423 6.15920 6.25898 6.28127 6.41680 6.65865 6.86511 6.96356 7.01511 7.19380 7.35644 7.60351 7.63129 7.74014 7.84429 7.97812 8.14416 8.47854 8.78967 8.79876 8.84855 10.16981 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014372 B = 0.003113 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.711796 B = 8991.756562 C = 9202.678038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.467 3.533 4 O -0.501 6.501 5 C -0.074 4.074 6 H 0.109 0.891 7 C -0.129 4.129 8 C 0.097 3.903 9 N -0.617 5.617 10 C 0.572 3.428 11 O -0.547 6.547 12 C -0.126 4.126 13 C -0.219 4.219 14 C -0.100 4.100 15 C -0.207 4.207 16 C 0.101 3.899 17 C -0.460 4.460 18 H 0.080 0.920 19 C 0.072 3.928 20 N -0.797 5.797 21 Si 0.913 3.087 22 H -0.270 1.270 23 H -0.276 1.276 24 H -0.261 1.261 25 C -0.090 4.090 26 C 0.119 3.881 27 C -0.089 4.089 28 H 0.084 0.916 29 C -0.159 4.159 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.124 0.876 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.283 0.717 41 H 0.130 0.870 42 H 0.064 0.936 43 H 0.097 0.903 44 H 0.059 0.941 45 H 0.081 0.919 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.518 -6.765 12.411 17.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.310 3.690 4 O -0.388 6.388 5 C -0.093 4.093 6 H 0.127 0.873 7 C -0.167 4.167 8 C -0.026 4.026 9 N -0.351 5.351 10 C 0.364 3.636 11 O -0.424 6.424 12 C -0.129 4.129 13 C -0.239 4.239 14 C -0.118 4.118 15 C -0.227 4.227 16 C 0.099 3.901 17 C -0.490 4.490 18 H 0.098 0.902 19 C -0.145 4.145 20 N -0.423 5.423 21 Si 0.737 3.263 22 H -0.195 1.195 23 H -0.200 1.200 24 H -0.185 1.185 25 C -0.110 4.110 26 C -0.003 4.003 27 C -0.108 4.108 28 H 0.103 0.897 29 C -0.217 4.217 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.118 0.882 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.141 0.859 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.094 0.906 41 H 0.148 0.852 42 H 0.082 0.918 43 H 0.115 0.885 44 H 0.078 0.922 45 H 0.100 0.900 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.805 -5.657 12.412 16.799 hybrid contribution -0.284 0.361 -0.642 0.790 sum -10.089 -5.296 11.770 16.382 Atomic orbital electron populations 1.23254 0.76557 1.03614 1.02489 1.86522 1.23256 1.33643 1.84064 1.23896 0.92086 0.81176 0.71861 1.90598 1.67237 1.36078 1.44936 1.21215 0.86637 0.99301 1.02143 0.87296 1.22013 0.96987 1.01425 0.96269 1.22281 0.92658 0.82603 1.05017 1.47982 1.45943 1.12553 1.28638 1.18955 0.77472 0.87041 0.80154 1.90683 1.62952 1.16221 1.72582 1.19435 1.04683 0.94234 0.94524 1.20556 1.10518 0.93864 0.98981 1.20465 0.99689 0.97663 0.94019 1.21167 1.09478 0.95503 0.96568 1.17595 0.89558 0.90218 0.92740 1.19574 1.12592 1.16253 1.00576 0.90170 1.25924 0.93811 0.95780 0.99019 1.69743 1.09099 1.25457 1.37995 0.86235 0.80203 0.78881 0.80973 1.19479 1.20048 1.18462 1.21574 0.99593 1.00187 0.89672 1.21559 0.91281 0.98491 0.89007 1.21413 0.95779 0.92649 1.00994 0.89727 1.22055 1.03212 1.00434 0.95959 0.92040 0.91879 0.88152 0.90598 0.89361 0.91608 0.85872 0.88142 0.88763 0.88568 0.90647 0.85217 0.91774 0.88511 0.92190 0.89997 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.84 10.44 -39.25 -0.41 -4.25 16 3 C 0.47 5.67 6.96 36.01 0.25 5.92 16 4 O -0.50 -7.20 13.33 -18.75 -0.25 -7.45 16 5 C -0.07 -0.83 2.14 -91.70 -0.20 -1.02 16 6 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 7 C -0.13 -1.54 5.30 -26.61 -0.14 -1.68 16 8 C 0.10 1.32 4.77 -3.72 -0.02 1.30 16 9 N -0.62 -10.29 2.97 -173.87 -0.52 -10.81 16 10 C 0.57 12.39 7.38 -12.31 -0.09 12.30 16 11 O -0.55 -13.54 16.24 5.32 0.09 -13.46 16 12 C -0.13 -2.88 5.28 -105.04 -0.55 -3.43 16 13 C -0.22 -4.39 7.36 -38.92 -0.29 -4.68 16 14 C -0.10 -2.03 10.01 -39.73 -0.40 -2.43 16 15 C -0.21 -4.76 9.78 -38.81 -0.38 -5.14 16 16 C 0.10 2.62 5.54 -106.87 -0.59 2.03 16 17 C -0.46 -11.94 9.06 -37.73 -0.34 -12.28 16 18 H 0.08 1.98 7.87 -52.49 -0.41 1.56 16 19 C 0.07 1.80 5.25 -17.34 -0.09 1.71 16 20 N -0.80 -20.80 10.87 55.55 0.60 -20.20 16 21 Si 0.91 18.76 29.57 -169.99 -5.03 13.73 16 22 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 23 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 25 C -0.09 -2.35 8.21 -38.45 -0.32 -2.67 16 26 C 0.12 1.68 5.73 -3.71 -0.02 1.66 16 27 C -0.09 -1.14 2.06 -90.47 -0.19 -1.32 16 28 H 0.08 1.30 8.13 -51.93 -0.42 0.87 16 29 C -0.16 -1.78 8.86 37.16 0.33 -1.45 16 30 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 31 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 32 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 35 H 0.07 0.73 8.05 -51.93 -0.42 0.31 16 36 H 0.12 1.92 4.47 -51.93 -0.23 1.69 16 37 H 0.10 1.69 6.04 -52.49 -0.32 1.38 16 38 H 0.09 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 40 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 41 H 0.13 3.70 6.19 -52.49 -0.32 3.37 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.10 1.54 7.00 -51.92 -0.36 1.18 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 1.02 5.41 -51.93 -0.28 0.74 16 46 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 369.75 15.07 5.57 5.57 Total: -1.00 -30.43 369.75 -8.46 -38.89 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -6.55 Total: 7.80 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -1.97 Total: -9.84 kcal Atomic # 7 Polarization: -31.09 SS G_CDS: 0.09 Total: -31.00 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.57 Total: -25.15 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.43 -8.46 -38.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187884200.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.343 kcal (2) G-P(sol) polarization free energy of solvation -30.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds