Wall clock time and date at job start Tue Mar 31 2020 17:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 116.99658 * 2 1 4 4 O 1.20822 * 120.00284 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99828 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.46255 * 59.96824 * 5 3 2 7 7 C 1.53042 * 109.45915 * 299.99256 * 5 3 2 8 8 C 1.53191 * 109.31266 * 178.61392 * 7 5 3 9 9 N 1.46922 * 108.77625 * 54.63440 * 8 7 5 10 10 C 1.34775 * 120.63030 * 126.38903 * 9 8 7 11 11 O 1.21550 * 119.99958 * 354.26433 * 10 9 8 12 12 C 1.47884 * 120.00269 * 174.26616 * 10 9 8 13 13 C 1.39917 * 120.02543 * 324.59068 * 12 10 9 14 14 C 1.38335 * 120.36100 * 179.74212 * 13 12 10 15 15 C 1.37748 * 120.40581 * 0.55447 * 14 13 12 16 16 C 1.40743 * 120.04511 * 359.70312 * 15 14 13 17 17 C 1.41442 * 120.18128 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99965 * 25.32404 * 17 16 15 19 19 C 1.39938 * 120.00277 * 205.33293 * 17 16 15 20 20 N 1.30827 * 119.99742 * 16.88511 * 19 17 16 21 21 Si 1.86795 * 120.00260 * 196.88789 * 19 17 16 22 22 H 1.48501 * 109.47182 * 59.99543 * 21 19 17 23 23 H 1.48496 * 109.47114 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46944 * 299.99866 * 21 19 17 25 25 C 1.39001 * 120.02770 * 144.86308 * 12 10 9 26 26 C 1.46926 * 118.74102 * 306.39554 * 9 8 7 27 27 C 1.53043 * 109.46211 * 179.97438 * 5 3 2 28 28 H 1.08997 * 109.49567 * 61.43292 * 27 5 3 29 29 C 1.52999 * 109.49741 * 301.33881 * 27 5 3 30 30 H 1.09001 * 109.46966 * 60.00791 * 1 2 3 31 31 H 1.09003 * 109.47315 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.48055 * 300.00800 * 1 2 3 33 33 H 1.08993 * 109.49876 * 298.56573 * 7 5 3 34 34 H 1.09005 * 109.49385 * 58.66817 * 7 5 3 35 35 H 1.09004 * 109.58882 * 174.42638 * 8 7 5 36 36 H 1.09005 * 109.58864 * 294.84923 * 8 7 5 37 37 H 1.08007 * 119.82169 * 359.97438 * 13 12 10 38 38 H 1.07994 * 119.79472 * 180.26162 * 14 13 12 39 39 H 1.08001 * 119.97470 * 179.72115 * 15 14 13 40 40 H 0.97004 * 119.99855 * 180.02562 * 20 19 17 41 41 H 1.08003 * 120.19875 * 359.95852 * 25 12 10 42 42 H 1.09001 * 109.58198 * 293.81702 * 26 9 8 43 43 H 1.09004 * 109.58584 * 173.39276 * 26 9 8 44 44 H 1.08997 * 109.47497 * 59.99446 * 29 27 5 45 45 H 1.08996 * 109.47373 * 180.02562 * 29 27 5 46 46 H 1.09008 * 109.46976 * 299.99649 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9562 0.7802 -0.8889 7 6 4.1126 0.5816 1.2507 8 6 5.6435 0.6334 1.2306 9 7 6.0675 2.0323 1.0825 10 6 6.9333 2.5836 1.9559 11 8 7.2904 1.9576 2.9347 12 6 7.4488 3.9500 1.7236 13 6 7.6966 4.3925 0.4195 14 6 8.1738 5.6712 0.1938 15 6 8.4213 6.5195 1.2505 16 6 8.1831 6.0903 2.5695 17 6 8.4358 6.9593 3.6566 18 1 8.4105 8.0290 3.5100 19 6 8.7185 6.4330 4.9220 20 7 9.0746 5.1801 5.0447 21 14 8.5876 7.5193 6.4360 22 1 7.1982 8.0282 6.5614 23 1 8.9357 6.7288 7.6439 24 1 9.5244 8.6642 6.3061 25 6 7.6929 4.7939 2.8008 26 6 5.5295 2.8190 -0.0357 27 6 3.9999 2.7427 -0.0002 28 1 3.6314 3.2313 0.9017 29 6 3.4257 3.4441 -1.2327 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3635 0.5139 0.8898 33 1 3.7431 1.0913 2.1404 34 1 3.7840 -0.4577 1.2632 35 1 6.0352 0.2297 2.1643 36 1 6.0180 0.0473 0.3912 37 1 7.5107 3.7334 -0.4157 38 1 8.3578 6.0047 -0.8167 39 1 8.7980 7.5149 1.0665 40 1 9.2703 4.8151 5.9219 41 1 7.5066 4.4553 3.8093 42 1 5.8946 2.4112 -0.9783 43 1 5.8458 3.8575 0.0625 44 1 2.3375 3.3870 -1.2094 45 1 3.7352 4.4892 -1.2331 46 1 3.7959 2.9557 -2.1342 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187884228.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:15 Heat of formation + Delta-G solvation = -99.196902 kcal Electronic energy + Delta-G solvation = -28844.894309 eV Core-core repulsion = 24892.302375 eV Total energy + Delta-G solvation = -3952.591934 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.06897 -39.75233 -37.72610 -36.97816 -36.40204 -33.87959 -33.22999 -32.47909 -30.10105 -29.48085 -28.34904 -26.78387 -25.88566 -25.35163 -23.15164 -21.96734 -21.27026 -20.93543 -20.09636 -18.81704 -17.80203 -17.55605 -16.92800 -16.54387 -15.88754 -15.73265 -15.11444 -14.89749 -14.73746 -14.50183 -14.18746 -13.93479 -13.63182 -13.49391 -13.03492 -12.82970 -12.69558 -12.50560 -12.41082 -12.35404 -12.02522 -11.88024 -11.74518 -11.68191 -11.15718 -11.13403 -11.03136 -10.95750 -10.80594 -10.71473 -10.62766 -10.38583 -10.15636 -10.07785 -9.70157 -9.23292 -8.93708 -8.33341 -7.60866 -7.49817 -6.79076 -4.42273 2.01371 2.28058 2.49851 2.80337 3.06921 3.08509 3.14974 3.36812 3.71709 3.91184 4.35263 4.52544 4.55958 4.62909 4.83357 4.90862 4.94377 5.01894 5.19659 5.25520 5.30118 5.45285 5.48578 5.53209 5.55475 5.67308 5.72618 5.90840 5.95265 6.00217 6.02968 6.11643 6.18370 6.28463 6.31661 6.44576 6.68666 6.86973 6.97814 7.03842 7.20151 7.37462 7.57769 7.64865 7.76512 7.86437 7.98032 8.15762 8.48807 8.79118 8.81742 8.86479 10.14938 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.016161 B = 0.003042 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.203772 B = 9203.306411 C = 9495.388070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.465 3.535 4 O -0.498 6.498 5 C -0.074 4.074 6 H 0.109 0.891 7 C -0.125 4.125 8 C 0.114 3.886 9 N -0.619 5.619 10 C 0.568 3.432 11 O -0.541 6.541 12 C -0.122 4.122 13 C -0.225 4.225 14 C -0.096 4.096 15 C -0.213 4.213 16 C 0.102 3.898 17 C -0.461 4.461 18 H 0.081 0.919 19 C 0.073 3.927 20 N -0.782 5.782 21 Si 0.910 3.090 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.265 1.265 25 C -0.098 4.098 26 C 0.101 3.899 27 C -0.091 4.091 28 H 0.084 0.916 29 C -0.159 4.159 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.285 0.715 41 H 0.128 0.872 42 H 0.064 0.936 43 H 0.124 0.876 44 H 0.080 0.920 45 H 0.063 0.937 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.564 -9.376 -10.154 18.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.309 3.691 4 O -0.385 6.385 5 C -0.093 4.093 6 H 0.127 0.873 7 C -0.163 4.163 8 C -0.009 4.009 9 N -0.353 5.353 10 C 0.360 3.640 11 O -0.418 6.418 12 C -0.125 4.125 13 C -0.245 4.245 14 C -0.115 4.115 15 C -0.232 4.232 16 C 0.100 3.900 17 C -0.489 4.489 18 H 0.099 0.901 19 C -0.147 4.147 20 N -0.406 5.406 21 Si 0.734 3.266 22 H -0.188 1.188 23 H -0.202 1.202 24 H -0.189 1.189 25 C -0.118 4.118 26 C -0.022 4.022 27 C -0.110 4.110 28 H 0.103 0.897 29 C -0.217 4.217 30 H 0.080 0.920 31 H 0.118 0.882 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.084 0.916 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.096 0.904 41 H 0.146 0.854 42 H 0.082 0.918 43 H 0.142 0.858 44 H 0.099 0.901 45 H 0.082 0.918 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.496 -9.610 -9.419 18.364 hybrid contribution -0.270 0.382 0.584 0.749 sum -12.767 -9.227 -8.834 18.061 Atomic orbital electron populations 1.23249 0.76579 1.03568 1.02530 1.86519 1.23251 1.33749 1.84139 1.23915 0.92096 0.81167 0.71971 1.90607 1.67190 1.36026 1.44726 1.21223 0.86582 0.99664 1.01873 0.87270 1.21939 0.96693 1.01266 0.96444 1.21469 0.92618 0.83295 1.03494 1.48025 1.46138 1.11765 1.29387 1.18995 0.77183 0.86924 0.80859 1.90706 1.59004 1.63737 1.28344 1.19408 1.05598 0.92443 0.95089 1.20510 1.12771 0.97103 0.94126 1.20451 0.99819 0.94104 0.97093 1.21098 1.09409 0.99750 0.92987 1.17568 0.88498 0.91915 0.92058 1.19560 1.42197 0.94662 0.92523 0.90131 1.25972 0.92398 0.95389 1.00923 1.69798 1.30020 1.14197 1.26579 0.86335 0.79969 0.80487 0.79798 1.18758 1.20233 1.18940 1.21518 0.98864 0.94141 0.97289 1.22406 0.91027 0.99938 0.88809 1.21476 0.96199 0.92254 1.01099 0.89748 1.22047 1.03023 1.00775 0.95827 0.91971 0.88206 0.91916 0.90806 0.89578 0.88466 0.91600 0.88272 0.88850 0.88654 0.90368 0.85413 0.91766 0.85804 0.90130 0.91814 0.93098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.66 10.44 -39.26 -0.41 -4.07 16 3 C 0.47 5.44 6.96 36.01 0.25 5.69 16 4 O -0.50 -6.97 13.33 -18.75 -0.25 -7.22 16 5 C -0.07 -0.80 2.14 -91.73 -0.20 -1.00 16 6 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 7 C -0.12 -1.39 5.30 -26.61 -0.14 -1.53 16 8 C 0.11 1.51 6.44 -3.71 -0.02 1.49 16 9 N -0.62 -10.18 2.97 -173.86 -0.52 -10.70 16 10 C 0.57 12.32 7.38 -12.31 -0.09 12.23 16 11 O -0.54 -13.47 16.23 5.32 0.09 -13.39 16 12 C -0.12 -2.83 5.28 -105.04 -0.56 -3.39 16 13 C -0.23 -4.62 7.36 -38.92 -0.29 -4.91 16 14 C -0.10 -2.00 10.01 -39.72 -0.40 -2.40 16 15 C -0.21 -4.96 9.78 -38.82 -0.38 -5.34 16 16 C 0.10 2.67 5.56 -106.87 -0.59 2.07 16 17 C -0.46 -12.00 9.05 -37.73 -0.34 -12.34 16 18 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 19 C 0.07 1.83 5.15 -17.34 -0.09 1.74 16 20 N -0.78 -20.76 10.96 55.55 0.61 -20.15 16 21 Si 0.91 18.72 29.59 -169.99 -5.03 13.69 16 22 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 25 C -0.10 -2.57 8.24 -38.44 -0.32 -2.89 16 26 C 0.10 1.40 4.05 -3.71 -0.02 1.38 16 27 C -0.09 -1.14 2.06 -90.50 -0.19 -1.33 16 28 H 0.08 1.25 8.13 -51.93 -0.42 0.83 16 29 C -0.16 -1.80 8.86 37.16 0.33 -1.47 16 30 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 31 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 0.78 8.09 -51.93 -0.42 0.36 16 35 H 0.10 1.45 7.00 -51.93 -0.36 1.09 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 1.74 6.03 -52.48 -0.32 1.42 16 38 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 40 H 0.29 6.99 8.30 -40.82 -0.34 6.65 16 41 H 0.13 3.63 6.12 -52.48 -0.32 3.31 16 42 H 0.06 0.75 8.05 -51.93 -0.42 0.34 16 43 H 0.12 1.96 4.46 -51.93 -0.23 1.73 16 44 H 0.08 1.00 5.41 -51.93 -0.28 0.72 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.49 8.14 -51.92 -0.42 0.06 16 LS Contribution 369.74 15.07 5.57 5.57 Total: -1.00 -30.82 369.74 -8.46 -39.28 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -6.55 Total: 7.67 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -1.97 Total: -10.68 kcal Atomic # 7 Polarization: -30.94 SS G_CDS: 0.09 Total: -30.84 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.57 Total: -24.69 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.82 -8.46 -39.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187884228.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.916 kcal (2) G-P(sol) polarization free energy of solvation -30.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds