Wall clock time and date at job start Tue Mar 31 2020 17:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 116.99658 * 2 1 4 4 O 1.20822 * 120.00284 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99828 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.46255 * 59.96824 * 5 3 2 7 7 C 1.53042 * 109.45915 * 299.99256 * 5 3 2 8 8 C 1.53191 * 109.31266 * 178.61392 * 7 5 3 9 9 N 1.46922 * 108.77625 * 54.63440 * 8 7 5 10 10 C 1.34775 * 120.63030 * 126.38903 * 9 8 7 11 11 O 1.21550 * 119.99958 * 354.26433 * 10 9 8 12 12 C 1.47884 * 120.00269 * 174.26616 * 10 9 8 13 13 C 1.39917 * 120.02543 * 324.59068 * 12 10 9 14 14 C 1.38335 * 120.36100 * 179.74212 * 13 12 10 15 15 C 1.37748 * 120.40581 * 0.55447 * 14 13 12 16 16 C 1.40743 * 120.04511 * 359.70312 * 15 14 13 17 17 C 1.41442 * 120.18128 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99965 * 25.32404 * 17 16 15 19 19 C 1.39938 * 120.00277 * 205.33293 * 17 16 15 20 20 N 1.30827 * 119.99742 * 16.88511 * 19 17 16 21 21 Si 1.86795 * 120.00260 * 196.88789 * 19 17 16 22 22 H 1.48501 * 109.47182 * 59.99543 * 21 19 17 23 23 H 1.48496 * 109.47114 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46944 * 299.99866 * 21 19 17 25 25 C 1.39001 * 120.02770 * 144.86308 * 12 10 9 26 26 C 1.46926 * 118.74102 * 306.39554 * 9 8 7 27 27 C 1.53043 * 109.46211 * 179.97438 * 5 3 2 28 28 H 1.08997 * 109.49567 * 61.43292 * 27 5 3 29 29 C 1.52999 * 109.49741 * 301.33881 * 27 5 3 30 30 H 1.09001 * 109.46966 * 60.00791 * 1 2 3 31 31 H 1.09003 * 109.47315 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.48055 * 300.00800 * 1 2 3 33 33 H 1.08993 * 109.49876 * 298.56573 * 7 5 3 34 34 H 1.09005 * 109.49385 * 58.66817 * 7 5 3 35 35 H 1.09004 * 109.58882 * 174.42638 * 8 7 5 36 36 H 1.09005 * 109.58864 * 294.84923 * 8 7 5 37 37 H 1.08007 * 119.82169 * 359.97438 * 13 12 10 38 38 H 1.07994 * 119.79472 * 180.26162 * 14 13 12 39 39 H 1.08001 * 119.97470 * 179.72115 * 15 14 13 40 40 H 0.97004 * 119.99855 * 180.02562 * 20 19 17 41 41 H 1.08003 * 120.19875 * 359.95852 * 25 12 10 42 42 H 1.09001 * 109.58198 * 293.81702 * 26 9 8 43 43 H 1.09004 * 109.58584 * 173.39276 * 26 9 8 44 44 H 1.08997 * 109.47497 * 59.99446 * 29 27 5 45 45 H 1.08996 * 109.47373 * 180.02562 * 29 27 5 46 46 H 1.09008 * 109.46976 * 299.99649 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9562 0.7802 -0.8889 7 6 4.1126 0.5816 1.2507 8 6 5.6435 0.6334 1.2306 9 7 6.0675 2.0323 1.0825 10 6 6.9333 2.5836 1.9559 11 8 7.2904 1.9576 2.9347 12 6 7.4488 3.9500 1.7236 13 6 7.6966 4.3925 0.4195 14 6 8.1738 5.6712 0.1938 15 6 8.4213 6.5195 1.2505 16 6 8.1831 6.0903 2.5695 17 6 8.4358 6.9593 3.6566 18 1 8.4105 8.0290 3.5100 19 6 8.7185 6.4330 4.9220 20 7 9.0746 5.1801 5.0447 21 14 8.5876 7.5193 6.4360 22 1 7.1982 8.0282 6.5614 23 1 8.9357 6.7288 7.6439 24 1 9.5244 8.6642 6.3061 25 6 7.6929 4.7939 2.8008 26 6 5.5295 2.8190 -0.0357 27 6 3.9999 2.7427 -0.0002 28 1 3.6314 3.2313 0.9017 29 6 3.4257 3.4441 -1.2327 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3635 0.5139 0.8898 33 1 3.7431 1.0913 2.1404 34 1 3.7840 -0.4577 1.2632 35 1 6.0352 0.2297 2.1643 36 1 6.0180 0.0473 0.3912 37 1 7.5107 3.7334 -0.4157 38 1 8.3578 6.0047 -0.8167 39 1 8.7980 7.5149 1.0665 40 1 9.2703 4.8151 5.9219 41 1 7.5066 4.4553 3.8093 42 1 5.8946 2.4112 -0.9783 43 1 5.8458 3.8575 0.0625 44 1 2.3375 3.3870 -1.2094 45 1 3.7352 4.4892 -1.2331 46 1 3.7959 2.9557 -2.1342 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187884228.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:14 Heat of formation + Delta-G solvation = -116.408240 kcal Electronic energy + Delta-G solvation = -28845.640649 eV Core-core repulsion = 24892.302375 eV Total energy + Delta-G solvation = -3953.338274 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.05614 -41.13144 -39.12500 -38.51290 -37.44771 -35.67284 -34.53521 -33.60908 -31.77476 -31.28844 -29.19311 -27.76922 -27.17408 -27.03329 -24.51659 -23.15465 -22.62991 -22.48326 -21.19660 -20.29944 -19.26609 -18.70028 -17.88941 -17.57997 -17.46383 -17.12581 -16.69643 -16.55915 -16.14654 -15.58438 -15.21400 -15.14839 -15.03421 -14.65068 -14.45412 -14.30673 -14.11513 -13.95927 -13.51444 -13.40864 -13.28555 -13.12755 -12.89791 -12.83949 -12.74094 -12.59072 -12.51890 -12.14874 -12.04810 -11.92801 -11.83514 -11.69585 -11.57093 -11.48307 -11.17470 -11.07025 -10.62154 -9.72434 -9.38388 -9.33894 -8.64837 -6.37823 0.48412 1.01040 1.12723 1.35051 1.46818 1.49367 1.71580 1.90302 2.12065 2.18490 2.74197 3.42222 3.55393 3.65539 3.71631 3.86233 3.93832 4.15933 4.25016 4.29555 4.31703 4.33298 4.47837 4.54411 4.61543 4.62859 4.68516 4.72733 4.75019 4.85932 4.87156 4.94591 5.05185 5.05767 5.08979 5.21531 5.28205 5.30320 5.31506 5.51489 5.56651 5.64981 5.85763 5.96651 6.04622 6.28530 6.37108 6.61735 6.72210 6.88565 6.95355 7.22920 8.30936 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.016161 B = 0.003042 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.203772 B = 9203.306411 C = 9495.388070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.468 3.532 4 O -0.528 6.528 5 C -0.069 4.069 6 H 0.146 0.854 7 C -0.116 4.116 8 C 0.110 3.890 9 N -0.607 5.607 10 C 0.561 3.439 11 O -0.588 6.588 12 C -0.132 4.132 13 C -0.199 4.199 14 C -0.094 4.094 15 C -0.218 4.218 16 C 0.070 3.930 17 C -0.499 4.499 18 H 0.084 0.916 19 C 0.028 3.972 20 N -0.827 5.827 21 Si 0.982 3.018 22 H -0.260 1.260 23 H -0.273 1.273 24 H -0.252 1.252 25 C -0.135 4.135 26 C 0.098 3.902 27 C -0.086 4.086 28 H 0.049 0.951 29 C -0.153 4.153 30 H 0.064 0.936 31 H 0.132 0.868 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.116 0.884 35 H 0.074 0.926 36 H 0.106 0.894 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.107 0.893 40 H 0.285 0.715 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.103 0.897 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.478 -10.563 -13.591 21.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.312 3.688 4 O -0.417 6.417 5 C -0.088 4.088 6 H 0.164 0.836 7 C -0.154 4.154 8 C -0.012 4.012 9 N -0.339 5.339 10 C 0.352 3.648 11 O -0.470 6.470 12 C -0.136 4.136 13 C -0.218 4.218 14 C -0.111 4.111 15 C -0.238 4.238 16 C 0.068 3.932 17 C -0.528 4.528 18 H 0.102 0.898 19 C -0.186 4.186 20 N -0.452 5.452 21 Si 0.802 3.198 22 H -0.185 1.185 23 H -0.198 1.198 24 H -0.176 1.176 25 C -0.156 4.156 26 C -0.024 4.024 27 C -0.105 4.105 28 H 0.067 0.933 29 C -0.210 4.210 30 H 0.083 0.917 31 H 0.150 0.850 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.134 0.866 35 H 0.093 0.907 36 H 0.124 0.876 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.125 0.875 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.087 0.913 45 H 0.078 0.922 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.449 -10.811 -12.916 21.554 hybrid contribution -0.122 0.633 1.419 1.559 sum -13.571 -10.178 -11.497 20.493 Atomic orbital electron populations 1.23525 0.75059 1.05637 1.02332 1.86501 1.24722 1.32688 1.83618 1.24005 0.92371 0.81191 0.71217 1.90611 1.67867 1.37078 1.46173 1.21210 0.86287 0.98390 1.02933 0.83644 1.21858 0.94973 1.02821 0.95735 1.21753 0.93955 0.81397 1.04095 1.48056 1.44057 1.13206 1.28533 1.18892 0.78245 0.86418 0.81250 1.90676 1.61235 1.64649 1.30407 1.19720 1.05171 0.93028 0.95640 1.20988 1.09379 0.97520 0.93915 1.20934 0.98139 0.93540 0.98525 1.21399 1.08892 1.00829 0.92660 1.17913 0.89453 0.92229 0.93653 1.19839 1.44259 0.94911 0.93803 0.89829 1.26859 0.91398 0.96570 1.03806 1.69914 1.32015 1.16202 1.27101 0.85256 0.80070 0.78693 0.75760 1.18476 1.19761 1.17613 1.21311 1.01973 0.95511 0.96770 1.22572 0.91859 0.98732 0.89210 1.21341 0.95137 0.93686 1.00384 0.93274 1.21981 1.02237 1.00702 0.96098 0.91725 0.85039 0.92648 0.93459 0.86606 0.90732 0.87604 0.84068 0.84212 0.87451 0.90403 0.89088 0.87563 0.87862 0.91295 0.92250 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.54 16 2 O -0.36 -6.28 10.44 -51.42 -0.54 -6.81 16 3 C 0.47 9.86 6.96 71.24 0.50 10.36 16 4 O -0.53 -14.22 13.33 21.97 0.29 -13.93 16 5 C -0.07 -1.27 2.14 -11.51 -0.02 -1.30 16 6 H 0.15 1.71 8.14 -2.39 -0.02 1.69 16 7 C -0.12 -2.32 5.30 30.67 0.16 -2.15 16 8 C 0.11 2.66 6.44 86.36 0.56 3.21 16 9 N -0.61 -19.08 2.97 -822.26 -2.44 -21.52 16 10 C 0.56 24.82 7.38 86.80 0.64 25.46 16 11 O -0.59 -30.92 16.23 -3.87 -0.06 -30.98 16 12 C -0.13 -6.26 5.28 -20.13 -0.11 -6.37 16 13 C -0.20 -7.70 7.36 22.70 0.17 -7.53 16 14 C -0.09 -3.63 10.01 22.18 0.22 -3.41 16 15 C -0.22 -10.15 9.78 22.77 0.22 -9.92 16 16 C 0.07 3.81 5.56 -21.32 -0.12 3.69 16 17 C -0.50 -27.40 9.05 23.47 0.21 -27.18 16 18 H 0.08 4.32 7.90 -2.91 -0.02 4.30 16 19 C 0.03 1.50 5.15 85.25 0.44 1.94 16 20 N -0.83 -47.10 10.96 21.82 0.24 -46.86 16 21 Si 0.98 40.19 29.59 68.60 2.03 42.22 16 22 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 23 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 24 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 25 C -0.14 -7.54 8.24 23.01 0.19 -7.35 16 26 C 0.10 2.40 4.05 86.36 0.35 2.75 16 27 C -0.09 -1.97 2.06 -10.72 -0.02 -1.99 16 28 H 0.05 1.47 8.13 -2.39 -0.02 1.45 16 29 C -0.15 -3.02 8.86 71.98 0.64 -2.39 16 30 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 31 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.05 0.79 8.13 -2.39 -0.02 0.77 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.12 1.69 8.09 -2.38 -0.02 1.67 16 35 H 0.07 2.21 7.00 -2.38 -0.02 2.19 16 36 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.14 4.26 6.03 -2.91 -0.02 4.24 16 38 H 0.14 4.18 8.06 -2.91 -0.02 4.15 16 39 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 40 H 0.29 15.08 8.30 -92.71 -0.77 14.31 16 41 H 0.09 5.68 6.12 -2.91 -0.02 5.66 16 42 H 0.11 1.83 8.05 -2.39 -0.02 1.81 16 43 H 0.10 3.00 4.46 -2.38 -0.01 2.99 16 44 H 0.07 1.59 5.41 -2.39 -0.01 1.57 16 45 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -74.81 369.74 5.73 -69.08 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 0.99 Total: 29.44 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 5.22 Total: -20.64 kcal Atomic # 7 Polarization: -66.18 SS G_CDS: -2.20 Total: -68.38 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: -0.31 Total: -51.72 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal Total: -74.81 5.73 -69.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187884228.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.326 kcal (2) G-P(sol) polarization free energy of solvation -74.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds