Wall clock time and date at job start Tue Mar 31 2020 15:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47076 * 2 1 4 4 H 1.09008 * 109.47147 * 305.55339 * 3 2 1 5 5 C 1.50703 * 109.47034 * 185.55864 * 3 2 1 6 6 H 1.08004 * 119.99783 * 275.09613 * 5 3 2 7 7 C 1.37877 * 120.00226 * 95.10126 * 5 3 2 8 8 N 1.31509 * 119.99792 * 174.74118 * 7 5 3 9 9 Si 1.86801 * 119.99906 * 354.74030 * 7 5 3 10 10 H 1.48496 * 109.47197 * 94.55562 * 9 7 5 11 11 H 1.48507 * 109.46682 * 214.55774 * 9 7 5 12 12 H 1.48501 * 109.47022 * 334.55538 * 9 7 5 13 13 O 1.45194 * 109.47157 * 65.55474 * 3 2 1 14 14 C 1.34230 * 117.00118 * 269.99821 * 13 3 2 15 15 O 1.20825 * 119.99936 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99953 * 180.02562 * 14 13 3 17 17 C 1.50695 * 109.47077 * 180.02562 * 16 14 13 18 18 C 1.38285 * 119.93087 * 89.99928 * 17 16 14 19 19 C 1.38117 * 120.07037 * 179.74618 * 18 17 16 20 20 C 1.38864 * 119.92926 * 0.25586 * 19 18 17 21 21 N 1.39931 * 120.07110 * 179.97438 * 20 19 18 22 22 C 1.34774 * 119.99379 * 33.33035 * 21 20 19 23 23 O 1.21283 * 120.00698 * 5.04723 * 22 21 20 24 24 C 1.50700 * 119.99558 * 185.05212 * 22 21 20 25 25 C 1.52994 * 117.50123 * 248.61916 * 24 22 21 26 26 C 1.52999 * 60.00208 * 252.50747 * 25 24 22 27 27 C 1.38875 * 119.86374 * 359.97438 * 20 19 18 28 28 C 1.38118 * 119.92575 * 0.02562 * 27 20 19 29 29 H 1.09000 * 109.47275 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46901 * 300.00256 * 1 2 3 31 31 H 1.09002 * 109.47346 * 60.00084 * 1 2 3 32 32 H 1.09000 * 109.46825 * 240.00291 * 2 1 3 33 33 H 1.09002 * 109.47346 * 119.99916 * 2 1 3 34 34 H 0.97006 * 120.00291 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47260 * 60.00232 * 16 14 13 36 36 H 1.09005 * 109.47198 * 300.00005 * 16 14 13 37 37 H 1.07996 * 119.96103 * 0.02562 * 18 17 16 38 38 H 1.07996 * 120.03067 * 180.27614 * 19 18 17 39 39 H 0.96999 * 120.00031 * 213.32571 * 21 20 19 40 40 H 1.09007 * 115.54797 * 34.32945 * 24 22 21 41 41 H 1.09003 * 117.50178 * 0.02562 * 25 24 22 42 42 H 1.08998 * 117.50357 * 145.02032 * 25 24 22 43 43 H 1.08998 * 117.50131 * 252.50955 * 26 25 24 44 44 H 1.08999 * 117.51287 * 107.47481 * 26 25 24 45 45 H 1.08001 * 120.04137 * 180.02562 * 27 20 19 46 46 H 1.07999 * 119.96621 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9843 -0.8361 5 6 3.5407 1.4447 -0.1376 6 1 4.1634 1.3324 0.7377 7 6 4.1188 1.5902 -1.3809 8 7 5.4251 1.6961 -1.4903 9 14 3.0466 1.6371 -2.9098 10 1 2.7503 3.0485 -3.2636 11 1 3.7614 0.9839 -4.0358 12 1 1.7757 0.9158 -2.6453 13 8 1.6672 2.0876 1.2462 14 6 0.4843 2.7214 1.2743 15 8 -0.2163 2.7369 0.2900 16 6 0.0305 3.4145 2.5332 17 6 -1.3198 4.0422 2.3021 18 6 -2.4701 3.3195 2.5608 19 6 -3.7092 3.8938 2.3550 20 6 -3.7992 5.1966 1.8829 21 7 -5.0531 5.7813 1.6728 22 6 -6.0888 5.4599 2.4731 23 8 -5.9140 4.7358 3.4301 24 6 -7.4644 6.0005 2.1786 25 6 -8.0448 7.0251 3.1552 26 6 -8.5985 5.5992 3.1239 27 6 -2.6422 5.9182 1.6195 28 6 -1.4061 5.3382 1.8274 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.8318 1.7988 -2.3649 35 1 0.7500 4.1880 2.8017 36 1 -0.0407 2.6878 3.3426 37 1 -2.3993 2.3065 2.9283 38 1 -4.6071 3.3304 2.5614 39 1 -5.1767 6.4177 0.9514 40 1 -7.7073 6.1175 1.1224 41 1 -7.4316 7.3087 4.0106 42 1 -8.6697 7.8168 2.7418 43 1 -9.5875 5.4527 2.6898 44 1 -8.3497 4.9440 3.9587 45 1 -2.7089 6.9318 1.2527 46 1 -0.5059 5.8989 1.6232 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187922470.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:57 Heat of formation + Delta-G solvation = -78.218874 kcal Electronic energy + Delta-G solvation = -27546.046096 eV Core-core repulsion = 23594.363838 eV Total energy + Delta-G solvation = -3951.682258 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.90994 -39.88398 -38.82391 -36.72438 -35.93663 -35.06742 -33.38923 -32.10789 -31.71216 -30.97202 -28.13432 -27.35149 -24.86744 -23.06365 -23.01853 -22.91247 -21.95607 -20.68379 -20.32675 -19.47615 -18.11366 -17.65256 -17.43515 -16.62555 -15.92053 -15.80650 -15.70481 -15.48354 -15.06865 -14.92183 -14.40172 -14.14910 -13.84287 -13.48981 -13.29287 -13.02195 -12.86912 -12.75407 -12.56189 -12.09186 -12.04455 -11.82593 -11.72147 -11.59190 -11.28761 -11.20022 -11.11561 -11.03766 -11.02752 -10.77329 -10.48902 -10.12214 -10.10279 -9.93835 -9.66282 -9.28652 -9.12660 -8.91522 -8.65853 -8.13272 -6.27926 -4.30741 1.12598 1.42622 2.13532 2.65618 2.96830 3.19200 3.29000 3.33235 3.35423 3.51968 3.98522 4.16925 4.26463 4.28507 4.37359 4.60107 4.76446 4.81142 4.95895 5.05817 5.10111 5.22124 5.29324 5.36441 5.42299 5.46121 5.63803 5.65569 5.66547 5.69932 5.91675 5.99309 6.01520 6.07081 6.20021 6.22334 6.40495 6.46088 6.62727 6.64254 6.80865 6.85112 6.97115 7.07843 7.18035 7.41989 7.57715 7.78252 8.26727 8.69401 8.84678 9.32348 10.83332 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.024515 B = 0.002247 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.883247 B =12455.696503 C =12514.870721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.133 4.133 3 C 0.190 3.810 4 H 0.047 0.953 5 C -0.520 4.520 6 H 0.085 0.915 7 C 0.082 3.918 8 N -0.881 5.881 9 Si 0.867 3.133 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.256 1.256 13 O -0.348 6.348 14 C 0.451 3.549 15 O -0.515 6.515 16 C -0.080 4.080 17 C -0.077 4.077 18 C -0.083 4.083 19 C -0.119 4.119 20 C 0.138 3.862 21 N -0.668 5.668 22 C 0.541 3.459 23 O -0.519 6.519 24 C -0.198 4.198 25 C -0.152 4.152 26 C -0.146 4.146 27 C -0.143 4.143 28 C -0.083 4.083 29 H 0.039 0.961 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.269 0.731 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.125 0.875 38 H 0.132 0.868 39 H 0.411 0.589 40 H 0.127 0.873 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.109 0.891 45 H 0.124 0.876 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.757 10.660 7.518 27.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C 0.137 3.863 4 H 0.065 0.935 5 C -0.557 4.557 6 H 0.103 0.897 7 C -0.123 4.123 8 N -0.517 5.517 9 Si 0.693 3.307 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.180 1.180 13 O -0.264 6.264 14 C 0.294 3.706 15 O -0.405 6.405 16 C -0.117 4.117 17 C -0.078 4.078 18 C -0.102 4.102 19 C -0.139 4.139 20 C 0.045 3.955 21 N -0.313 5.313 22 C 0.329 3.671 23 O -0.394 6.394 24 C -0.219 4.219 25 C -0.189 4.189 26 C -0.183 4.183 27 C -0.163 4.163 28 C -0.101 4.101 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.143 0.857 38 H 0.150 0.850 39 H 0.247 0.753 40 H 0.145 0.855 41 H 0.119 0.881 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.128 0.872 45 H 0.142 0.858 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -24.694 10.127 7.749 27.792 hybrid contribution -0.437 0.372 -1.570 1.671 sum -25.131 10.499 6.180 27.928 Atomic orbital electron populations 1.21915 0.97467 0.99675 1.01583 1.22125 0.93650 0.99093 1.02212 1.20946 0.96005 0.88690 0.80703 0.93494 1.20802 0.87939 1.51255 0.95693 0.89742 1.24901 0.95041 0.93530 0.98814 1.69880 1.09619 1.47420 1.24827 0.86991 0.81467 0.79355 0.82900 1.19862 1.20669 1.17993 1.86639 1.34183 1.62422 1.43150 1.23269 0.80771 0.77062 0.89543 1.90610 1.55009 1.58408 1.36437 1.20324 0.94729 1.01046 0.95636 1.19367 0.93790 0.94382 1.00212 1.20884 0.91268 0.99353 0.98682 1.21007 0.98438 0.93238 1.01195 1.17685 0.84061 0.92407 1.01326 1.43428 1.08249 1.45548 1.34055 1.19817 0.85208 0.80330 0.81724 1.90728 1.84441 1.36204 1.28063 1.22189 0.92344 1.08068 0.99268 1.22975 1.02771 0.93038 1.00154 1.22985 0.96231 0.97998 1.01069 1.20775 0.91213 0.99576 1.04769 1.20816 0.97171 0.94741 0.97414 0.94203 0.93793 0.92831 0.91178 0.91994 0.92066 0.87128 0.87338 0.85697 0.85007 0.75338 0.85495 0.88098 0.87565 0.87677 0.87227 0.85763 0.85454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.57 37.16 0.32 -2.62 16 2 C -0.13 -2.94 5.32 -26.73 -0.14 -3.08 16 3 C 0.19 4.72 1.79 -27.88 -0.05 4.67 16 4 H 0.05 1.23 4.63 -51.92 -0.24 0.99 16 5 C -0.52 -14.70 9.24 -34.44 -0.32 -15.02 16 6 H 0.08 2.58 8.06 -52.48 -0.42 2.15 16 7 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 8 N -0.88 -26.20 13.96 55.43 0.77 -25.42 16 9 Si 0.87 21.35 26.55 -169.99 -4.51 16.83 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.26 -6.12 6.20 56.52 0.35 -5.77 16 13 O -0.35 -7.90 9.81 -39.26 -0.39 -8.28 16 14 C 0.45 8.82 6.43 36.01 0.23 9.06 16 15 O -0.51 -11.22 13.18 -18.75 -0.25 -11.47 16 16 C -0.08 -1.13 5.94 -29.04 -0.17 -1.31 16 17 C -0.08 -1.08 4.38 -104.59 -0.46 -1.54 16 18 C -0.08 -1.15 9.69 -39.61 -0.38 -1.54 16 19 C -0.12 -1.63 8.66 -39.39 -0.34 -1.97 16 20 C 0.14 1.69 6.28 -83.69 -0.53 1.16 16 21 N -0.67 -6.18 5.34 -9.86 -0.05 -6.23 16 22 C 0.54 5.46 7.36 -10.99 -0.08 5.38 16 23 O -0.52 -7.16 13.94 5.56 0.08 -7.09 16 24 C -0.20 -1.27 6.19 -91.77 -0.57 -1.84 16 25 C -0.15 -0.80 10.23 -26.73 -0.27 -1.07 16 26 C -0.15 -0.88 10.04 -26.73 -0.27 -1.15 16 27 C -0.14 -1.65 9.96 -39.39 -0.39 -2.05 16 28 C -0.08 -1.07 9.69 -39.61 -0.38 -1.46 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.04 0.84 6.05 -51.93 -0.31 0.53 16 31 H 0.05 1.11 7.83 -51.93 -0.41 0.70 16 32 H 0.07 1.56 7.30 -51.93 -0.38 1.18 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.11 1.36 8.09 -51.93 -0.42 0.94 16 36 H 0.11 1.30 8.08 -51.93 -0.42 0.88 16 37 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 38 H 0.13 1.85 6.41 -52.49 -0.34 1.51 16 39 H 0.41 2.42 8.82 -40.82 -0.36 2.06 16 40 H 0.13 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.11 0.85 7.67 -51.93 -0.40 0.45 16 45 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 46 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 382.70 15.07 5.77 5.77 Total: -1.00 -34.53 382.70 -9.17 -43.70 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.69 Total: 4.32 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -3.91 Total: -12.13 kcal Atomic # 7 Polarization: -32.38 SS G_CDS: 0.72 Total: -31.66 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.55 Total: -26.84 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.51 Total: 16.83 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.53 -9.17 -43.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187922470.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.517 kcal (2) G-P(sol) polarization free energy of solvation -34.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds