Wall clock time and date at job start Tue Mar 31 2020 15:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47076 * 2 1 4 4 H 1.09008 * 109.47147 * 305.55339 * 3 2 1 5 5 C 1.50703 * 109.47034 * 185.55864 * 3 2 1 6 6 H 1.08004 * 119.99783 * 275.09613 * 5 3 2 7 7 C 1.37877 * 120.00226 * 95.10126 * 5 3 2 8 8 N 1.31509 * 119.99792 * 174.74118 * 7 5 3 9 9 Si 1.86801 * 119.99906 * 354.74030 * 7 5 3 10 10 H 1.48496 * 109.47197 * 94.55562 * 9 7 5 11 11 H 1.48507 * 109.46682 * 214.55774 * 9 7 5 12 12 H 1.48501 * 109.47022 * 334.55538 * 9 7 5 13 13 O 1.45194 * 109.47157 * 65.55474 * 3 2 1 14 14 C 1.34230 * 117.00118 * 269.99821 * 13 3 2 15 15 O 1.20825 * 119.99936 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99953 * 180.02562 * 14 13 3 17 17 C 1.50695 * 109.47077 * 180.02562 * 16 14 13 18 18 C 1.38285 * 119.93087 * 89.99928 * 17 16 14 19 19 C 1.38117 * 120.07037 * 179.74618 * 18 17 16 20 20 C 1.38864 * 119.92926 * 0.25586 * 19 18 17 21 21 N 1.39931 * 120.07110 * 179.97438 * 20 19 18 22 22 C 1.34774 * 119.99379 * 33.33035 * 21 20 19 23 23 O 1.21283 * 120.00698 * 5.04723 * 22 21 20 24 24 C 1.50700 * 119.99558 * 185.05212 * 22 21 20 25 25 C 1.52994 * 117.50123 * 248.61916 * 24 22 21 26 26 C 1.52999 * 60.00208 * 252.50747 * 25 24 22 27 27 C 1.38875 * 119.86374 * 359.97438 * 20 19 18 28 28 C 1.38118 * 119.92575 * 0.02562 * 27 20 19 29 29 H 1.09000 * 109.47275 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46901 * 300.00256 * 1 2 3 31 31 H 1.09002 * 109.47346 * 60.00084 * 1 2 3 32 32 H 1.09000 * 109.46825 * 240.00291 * 2 1 3 33 33 H 1.09002 * 109.47346 * 119.99916 * 2 1 3 34 34 H 0.97006 * 120.00291 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47260 * 60.00232 * 16 14 13 36 36 H 1.09005 * 109.47198 * 300.00005 * 16 14 13 37 37 H 1.07996 * 119.96103 * 0.02562 * 18 17 16 38 38 H 1.07996 * 120.03067 * 180.27614 * 19 18 17 39 39 H 0.96999 * 120.00031 * 213.32571 * 21 20 19 40 40 H 1.09007 * 115.54797 * 34.32945 * 24 22 21 41 41 H 1.09003 * 117.50178 * 0.02562 * 25 24 22 42 42 H 1.08998 * 117.50357 * 145.02032 * 25 24 22 43 43 H 1.08998 * 117.50131 * 252.50955 * 26 25 24 44 44 H 1.08999 * 117.51287 * 107.47481 * 26 25 24 45 45 H 1.08001 * 120.04137 * 180.02562 * 27 20 19 46 46 H 1.07999 * 119.96621 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9843 -0.8361 5 6 3.5407 1.4447 -0.1376 6 1 4.1634 1.3324 0.7377 7 6 4.1188 1.5902 -1.3809 8 7 5.4251 1.6961 -1.4903 9 14 3.0466 1.6371 -2.9098 10 1 2.7503 3.0485 -3.2636 11 1 3.7614 0.9839 -4.0358 12 1 1.7757 0.9158 -2.6453 13 8 1.6672 2.0876 1.2462 14 6 0.4843 2.7214 1.2743 15 8 -0.2163 2.7369 0.2900 16 6 0.0305 3.4145 2.5332 17 6 -1.3198 4.0422 2.3021 18 6 -2.4701 3.3195 2.5608 19 6 -3.7092 3.8938 2.3550 20 6 -3.7992 5.1966 1.8829 21 7 -5.0531 5.7813 1.6728 22 6 -6.0888 5.4599 2.4731 23 8 -5.9140 4.7358 3.4301 24 6 -7.4644 6.0005 2.1786 25 6 -8.0448 7.0251 3.1552 26 6 -8.5985 5.5992 3.1239 27 6 -2.6422 5.9182 1.6195 28 6 -1.4061 5.3382 1.8274 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.8318 1.7988 -2.3649 35 1 0.7500 4.1880 2.8017 36 1 -0.0407 2.6878 3.3426 37 1 -2.3993 2.3065 2.9283 38 1 -4.6071 3.3304 2.5614 39 1 -5.1767 6.4177 0.9514 40 1 -7.7073 6.1175 1.1224 41 1 -7.4316 7.3087 4.0106 42 1 -8.6697 7.8168 2.7418 43 1 -9.5875 5.4527 2.6898 44 1 -8.3497 4.9440 3.9587 45 1 -2.7089 6.9318 1.2527 46 1 -0.5059 5.8989 1.6232 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187922470.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:57 Heat of formation + Delta-G solvation = -98.439121 kcal Electronic energy + Delta-G solvation = -27546.922912 eV Core-core repulsion = 23594.363838 eV Total energy + Delta-G solvation = -3952.559074 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.79264 -41.37385 -39.83621 -37.74663 -37.15477 -36.04146 -35.32638 -33.98487 -32.86459 -31.94584 -29.87650 -28.59594 -25.71657 -24.85199 -24.00743 -23.36539 -23.17355 -22.02574 -21.20593 -21.08368 -19.38557 -18.85024 -18.44314 -18.42634 -17.47099 -17.21840 -16.67251 -16.33030 -16.20816 -16.01075 -15.72982 -15.27651 -14.94535 -14.83318 -14.67782 -14.42814 -14.16114 -13.97323 -13.72967 -13.61076 -13.39616 -13.18486 -12.99510 -12.87539 -12.72744 -12.57738 -12.45572 -12.15314 -11.92717 -11.83732 -11.58040 -11.54530 -11.44922 -11.32117 -11.21707 -11.09898 -10.93441 -10.71277 -9.90010 -9.08819 -8.46597 -6.54931 0.14226 0.43772 1.24399 1.28839 1.37268 1.40867 1.42528 1.94192 2.07753 2.20599 2.78158 2.89424 2.98925 3.56684 3.66712 3.80620 3.86118 3.94215 4.01923 4.07105 4.17230 4.19274 4.25198 4.27908 4.40044 4.44143 4.54697 4.60782 4.66892 4.68798 4.73290 4.88053 5.01072 5.01463 5.05522 5.09068 5.11432 5.20232 5.22630 5.28683 5.36847 5.45726 5.48300 5.61129 5.75004 6.01269 6.22021 6.36328 6.53598 7.00915 7.05212 7.15441 8.68721 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.024515 B = 0.002247 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.883247 B =12455.696503 C =12514.870721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.131 4.131 3 C 0.193 3.807 4 H 0.035 0.965 5 C -0.532 4.532 6 H 0.046 0.954 7 C 0.033 3.967 8 N -0.923 5.923 9 Si 0.927 3.073 10 H -0.271 1.271 11 H -0.268 1.268 12 H -0.245 1.245 13 O -0.362 6.362 14 C 0.448 3.552 15 O -0.536 6.536 16 C -0.069 4.069 17 C -0.094 4.094 18 C -0.093 4.093 19 C -0.137 4.137 20 C 0.136 3.864 21 N -0.658 5.658 22 C 0.535 3.465 23 O -0.564 6.564 24 C -0.199 4.199 25 C -0.139 4.139 26 C -0.154 4.154 27 C -0.140 4.140 28 C -0.092 4.092 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.275 0.725 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.121 0.879 39 H 0.428 0.572 40 H 0.157 0.843 41 H 0.087 0.913 42 H 0.135 0.865 43 H 0.128 0.872 44 H 0.085 0.915 45 H 0.156 0.844 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.436 12.049 6.661 30.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 C 0.139 3.861 4 H 0.053 0.947 5 C -0.569 4.569 6 H 0.064 0.936 7 C -0.168 4.168 8 N -0.561 5.561 9 Si 0.750 3.250 10 H -0.197 1.197 11 H -0.192 1.192 12 H -0.169 1.169 13 O -0.279 6.279 14 C 0.292 3.708 15 O -0.427 6.427 16 C -0.106 4.106 17 C -0.095 4.095 18 C -0.112 4.112 19 C -0.157 4.157 20 C 0.042 3.958 21 N -0.303 5.303 22 C 0.325 3.675 23 O -0.442 6.442 24 C -0.220 4.220 25 C -0.176 4.176 26 C -0.191 4.191 27 C -0.160 4.160 28 C -0.110 4.110 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.139 0.861 39 H 0.268 0.732 40 H 0.175 0.825 41 H 0.106 0.894 42 H 0.153 0.847 43 H 0.146 0.854 44 H 0.103 0.897 45 H 0.173 0.827 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -27.393 11.540 6.885 30.512 hybrid contribution 0.358 -0.003 -1.182 1.235 sum -27.035 11.537 5.702 29.942 Atomic orbital electron populations 1.21801 0.95273 1.01515 1.01003 1.22044 0.95516 0.97075 1.02310 1.20712 0.93748 0.90321 0.81297 0.94685 1.20955 0.89793 1.51471 0.94670 0.93579 1.25675 0.96201 0.93086 1.01841 1.69985 1.11332 1.48845 1.25965 0.86040 0.80165 0.79561 0.79275 1.19655 1.19235 1.16886 1.86597 1.36271 1.63199 1.41798 1.24251 0.79269 0.76173 0.91075 1.90592 1.55237 1.59080 1.37807 1.20411 0.95288 1.01674 0.93233 1.19409 0.93405 0.95091 1.01623 1.21018 0.91444 0.99792 0.98911 1.21053 0.98062 0.94262 1.02355 1.17862 0.85551 0.92045 1.00352 1.43409 1.07166 1.45396 1.34364 1.20543 0.86525 0.79509 0.80933 1.90710 1.85224 1.38221 1.30023 1.22273 0.89951 1.08710 1.01052 1.23072 1.02124 0.93198 0.99186 1.23050 0.97161 0.98396 1.00491 1.21082 0.90342 1.00778 1.03844 1.21113 0.98360 0.94602 0.96972 0.91132 0.93728 0.94015 0.91512 0.91535 0.91569 0.84974 0.85009 0.85174 0.86070 0.73240 0.82547 0.89401 0.84680 0.85367 0.89690 0.82669 0.84203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.21 8.57 71.98 0.62 -4.59 16 2 C -0.13 -5.71 5.32 30.59 0.16 -5.55 16 3 C 0.19 9.62 1.79 29.85 0.05 9.67 16 4 H 0.04 1.83 4.63 -2.38 -0.01 1.82 16 5 C -0.53 -30.85 9.24 25.60 0.24 -30.62 16 6 H 0.05 2.95 8.06 -2.91 -0.02 2.92 16 7 C 0.03 1.90 5.47 84.66 0.46 2.36 16 8 N -0.92 -56.09 13.96 21.45 0.30 -55.79 16 9 Si 0.93 44.03 26.55 68.60 1.82 45.85 16 10 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 12 H -0.25 -11.14 6.20 99.48 0.62 -10.53 16 13 O -0.36 -16.42 9.81 -51.42 -0.50 -16.93 16 14 C 0.45 17.14 6.43 71.24 0.46 17.60 16 15 O -0.54 -22.93 13.18 21.97 0.29 -22.64 16 16 C -0.07 -1.86 5.94 29.10 0.17 -1.68 16 17 C -0.09 -2.54 4.38 -19.84 -0.09 -2.62 16 18 C -0.09 -2.53 9.69 22.25 0.22 -2.32 16 19 C -0.14 -3.74 8.66 22.39 0.19 -3.55 16 20 C 0.14 3.14 6.28 38.15 0.24 3.38 16 21 N -0.66 -11.02 5.34 -303.51 -1.62 -12.64 16 22 C 0.53 10.28 7.36 87.66 0.64 10.92 16 23 O -0.56 -15.80 13.94 -3.04 -0.04 -15.84 16 24 C -0.20 -2.12 6.19 -11.54 -0.07 -2.19 16 25 C -0.14 -1.12 10.23 30.59 0.31 -0.81 16 26 C -0.15 -1.63 10.04 30.59 0.31 -1.32 16 27 C -0.14 -2.94 9.96 22.39 0.22 -2.72 16 28 C -0.09 -2.22 9.69 22.25 0.22 -2.00 16 29 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.04 1.64 6.05 -2.39 -0.01 1.63 16 31 H 0.04 1.65 7.83 -2.39 -0.02 1.63 16 32 H 0.07 2.91 7.30 -2.39 -0.02 2.89 16 33 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 35 H 0.13 2.99 8.09 -2.39 -0.02 2.97 16 36 H 0.13 2.92 8.08 -2.38 -0.02 2.90 16 37 H 0.13 3.22 8.06 -2.91 -0.02 3.20 16 38 H 0.12 3.51 6.41 -2.91 -0.02 3.49 16 39 H 0.43 3.88 8.82 -92.71 -0.82 3.06 16 40 H 0.16 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.14 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.08 1.34 7.67 -2.39 -0.02 1.32 16 45 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 46 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -77.39 382.70 4.70 -72.70 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.10 Total: 21.34 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: 4.36 Total: -16.04 kcal Atomic # 7 Polarization: -67.11 SS G_CDS: -1.32 Total: -68.43 kcal Atomic # 8 Polarization: -55.16 SS G_CDS: -0.26 Total: -55.42 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.82 Total: 45.85 kcal Total: -77.39 4.70 -72.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187922470.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.744 kcal (2) G-P(sol) polarization free energy of solvation -77.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds