Wall clock time and date at job start Tue Mar 31 2020 15:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47445 * 2 1 4 4 H 1.08998 * 109.46910 * 55.00124 * 3 2 1 5 5 C 1.50691 * 109.47468 * 175.00292 * 3 2 1 6 6 H 1.08001 * 120.00036 * 119.99712 * 5 3 2 7 7 C 1.37878 * 120.00194 * 300.00509 * 5 3 2 8 8 N 1.31513 * 119.99819 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00214 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47408 * 59.99444 * 9 7 5 11 11 H 1.48499 * 109.47468 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46858 * 299.99390 * 9 7 5 13 13 O 1.45201 * 109.46929 * 295.00566 * 3 2 1 14 14 C 1.34758 * 117.00141 * 89.99951 * 13 3 2 15 15 O 1.21509 * 120.00067 * 359.97438 * 14 13 3 16 16 C 1.47379 * 119.99898 * 180.02562 * 14 13 3 17 17 C 1.39745 * 120.20612 * 359.97435 * 16 14 13 18 18 C 1.37778 * 119.91528 * 180.02562 * 17 16 14 19 19 C 1.38583 * 120.33947 * 0.02562 * 18 17 16 20 20 C 1.38022 * 120.41500 * 359.73969 * 19 18 17 21 21 C 1.38850 * 120.07421 * 0.51852 * 20 19 18 22 22 N 1.39259 * 120.16528 * 179.76601 * 21 20 19 23 23 C 1.46496 * 119.99720 * 269.71615 * 22 21 20 24 24 C 1.34777 * 120.00021 * 89.72312 * 22 21 20 25 25 O 1.21283 * 119.99750 * 359.97438 * 24 22 21 26 26 C 1.50697 * 120.00260 * 180.27434 * 24 22 21 27 27 C 1.53003 * 117.49704 * 248.34866 * 26 24 22 28 28 C 1.52990 * 117.50138 * 179.72210 * 26 24 22 29 29 H 1.08999 * 109.46811 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46714 * 299.99838 * 1 2 3 31 31 H 1.08998 * 109.47305 * 59.99689 * 1 2 3 32 32 H 1.09006 * 109.46714 * 240.00161 * 2 1 3 33 33 H 1.08998 * 109.47305 * 120.00310 * 2 1 3 34 34 H 0.97002 * 119.99797 * 180.02562 * 8 7 5 35 35 H 1.07999 * 120.04398 * 0.04197 * 17 16 14 36 36 H 1.08000 * 119.82925 * 179.97438 * 18 17 16 37 37 H 1.08000 * 119.78911 * 179.97438 * 19 18 17 38 38 H 1.08000 * 119.96002 * 180.25449 * 20 19 18 39 39 H 1.09001 * 109.47420 * 269.99799 * 23 22 21 40 40 H 1.08997 * 109.47484 * 30.00371 * 23 22 21 41 41 H 1.09001 * 109.46582 * 150.00234 * 23 22 21 42 42 H 1.09003 * 115.54686 * 34.04726 * 26 24 22 43 43 H 1.08996 * 117.49883 * 359.97438 * 27 26 24 44 44 H 1.09000 * 117.49554 * 145.01799 * 27 26 24 45 45 H 1.09002 * 117.50052 * 214.97703 * 28 26 24 46 46 H 1.08996 * 117.50229 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1434 0.8783 1.2278 8 7 3.4063 0.3373 2.1731 9 14 6.0050 0.8812 1.3815 10 1 6.4996 2.2814 1.3819 11 1 6.3980 0.2176 2.6506 12 1 6.5975 0.1472 0.2345 13 8 1.6558 2.0917 -1.2407 14 6 0.4680 2.7280 -1.2559 15 8 -0.2278 2.7396 -0.2598 16 6 0.0125 3.4088 -2.4810 17 6 0.8090 3.3977 -3.6292 18 6 0.3775 4.0366 -4.7711 19 6 -0.8436 4.6917 -4.7877 20 6 -1.6435 4.7073 -3.6631 21 6 -1.2232 4.0736 -2.5013 22 7 -2.0266 4.0923 -1.3641 23 6 -1.8815 5.1700 -0.3824 24 6 -2.9376 3.1189 -1.1665 25 8 -3.0579 2.2269 -1.9794 26 6 -3.8114 3.1425 0.0611 27 6 -3.5838 2.0532 1.1112 28 6 -4.8303 2.0131 0.2248 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8295 -0.0606 2.9500 35 1 1.7616 2.8887 -3.6215 36 1 0.9944 4.0274 -5.6575 37 1 -1.1729 5.1899 -5.6875 38 1 -2.5956 5.2166 -3.6855 39 1 -1.1433 4.8825 0.3663 40 1 -1.5528 6.0788 -0.8864 41 1 -2.8404 5.3504 0.1034 42 1 -4.0962 4.1328 0.4164 43 1 -2.8025 1.3193 0.9138 44 1 -3.7190 2.3268 2.1576 45 1 -5.7855 2.2602 0.6881 46 1 -4.8691 1.2532 -0.5556 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187932015.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:46 Heat of formation + Delta-G solvation = -56.530539 kcal Electronic energy + Delta-G solvation = -29825.347823 eV Core-core repulsion = 25874.606041 eV Total energy + Delta-G solvation = -3950.741782 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.76602 -39.35973 -38.39099 -36.20071 -35.68086 -35.17983 -33.48466 -31.57020 -30.99729 -30.35404 -27.29577 -26.66766 -25.20551 -23.97509 -23.03450 -22.33448 -21.98799 -20.80287 -19.54766 -19.00122 -17.72538 -17.34823 -16.78436 -16.61455 -15.86851 -15.61831 -15.22373 -14.91921 -14.75596 -14.57322 -14.21536 -13.93047 -13.75869 -13.07157 -12.85335 -12.80528 -12.65596 -12.60626 -12.30098 -11.98324 -11.83400 -11.50590 -11.47670 -11.36799 -11.25049 -11.16087 -10.93695 -10.63467 -10.50832 -10.44722 -10.28689 -9.77298 -9.72869 -9.63379 -9.33794 -8.97209 -8.83589 -8.79019 -8.66732 -8.44500 -6.18558 -4.25604 0.85290 1.27141 2.65155 2.97845 3.10894 3.25438 3.29168 3.31160 3.65080 3.92865 3.96506 4.33029 4.63493 4.81414 4.85635 4.93938 4.95224 5.00868 5.09109 5.13426 5.19654 5.37986 5.45255 5.54741 5.65467 5.66417 5.78083 5.91097 5.96174 6.07467 6.19432 6.21885 6.28234 6.35136 6.38502 6.41629 6.53843 6.59197 6.90913 6.98115 7.01896 7.19920 7.27032 7.38834 7.61736 7.74836 7.95200 8.16561 8.34800 8.64567 8.89670 9.39488 10.88064 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012042 B = 0.004439 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.582077 B = 6305.585739 C = 7834.101950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.226 3.774 4 H 0.046 0.954 5 C -0.522 4.522 6 H 0.067 0.933 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.910 3.090 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.352 6.352 14 C 0.496 3.504 15 O -0.501 6.501 16 C -0.109 4.109 17 C -0.059 4.059 18 C -0.130 4.130 19 C -0.089 4.089 20 C -0.126 4.126 21 C 0.196 3.804 22 N -0.563 5.563 23 C 0.085 3.915 24 C 0.563 3.437 25 O -0.535 6.535 26 C -0.190 4.190 27 C -0.140 4.140 28 C -0.154 4.154 29 H 0.031 0.969 30 H 0.051 0.949 31 H 0.033 0.967 32 H 0.040 0.960 33 H 0.108 0.892 34 H 0.266 0.734 35 H 0.145 0.855 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.122 0.878 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.100 0.900 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.479 10.080 -7.560 17.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.173 4.173 3 C 0.174 3.826 4 H 0.064 0.936 5 C -0.560 4.560 6 H 0.085 0.915 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.737 3.263 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.199 1.199 13 O -0.269 6.269 14 C 0.340 3.660 15 O -0.391 6.391 16 C -0.111 4.111 17 C -0.077 4.077 18 C -0.148 4.148 19 C -0.108 4.108 20 C -0.145 4.145 21 C 0.105 3.895 22 N -0.292 5.292 23 C -0.057 4.057 24 C 0.353 3.647 25 O -0.411 6.411 26 C -0.211 4.211 27 C -0.177 4.177 28 C -0.191 4.191 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.126 0.874 34 H 0.076 0.924 35 H 0.162 0.838 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.140 0.860 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.118 0.882 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.704 9.477 -7.445 17.510 hybrid contribution 1.036 0.053 0.311 1.083 sum -11.668 9.529 -7.133 16.668 Atomic orbital electron populations 1.21828 0.98238 0.98930 1.00688 1.22011 0.92686 0.99344 1.03218 1.20640 0.94850 0.88689 0.78466 0.93580 1.20997 0.89686 1.39057 1.06238 0.91457 1.24864 0.99145 0.94737 0.95067 1.69883 1.35429 1.37761 1.09440 0.86358 0.83980 0.78457 0.77485 1.20022 1.21034 1.19939 1.86532 1.33629 1.62491 1.44210 1.20685 0.81096 0.77127 0.87121 1.90738 1.55084 1.58276 1.35030 1.19835 0.95716 1.01379 0.94202 1.21546 0.99428 0.95715 0.91050 1.21195 0.96748 0.98486 0.98368 1.21196 0.94050 0.97878 0.97657 1.21207 1.00316 1.00917 0.92090 1.17384 0.89025 0.95849 0.87238 1.44767 1.36208 1.27079 1.21178 1.21866 1.02877 0.88551 0.92360 1.19546 0.79008 0.80093 0.86026 1.90686 1.69409 1.34979 1.46005 1.22094 1.03631 0.97143 0.98192 1.22922 1.00117 0.99330 0.95322 1.22953 0.93535 0.99639 1.02974 0.95000 0.93041 0.94805 0.94113 0.87409 0.92364 0.83761 0.85073 0.85280 0.85365 0.90969 0.91460 0.90713 0.86028 0.87663 0.87910 0.88181 0.87676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.56 37.16 0.32 -2.90 16 2 C -0.13 -3.42 5.49 -26.73 -0.15 -3.57 16 3 C 0.23 6.01 2.25 -27.89 -0.06 5.95 16 4 H 0.05 1.35 7.16 -51.93 -0.37 0.97 16 5 C -0.52 -14.54 8.90 -34.44 -0.31 -14.84 16 6 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 7 C 0.06 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -24.91 11.29 55.43 0.63 -24.29 16 9 Si 0.91 20.95 29.54 -169.99 -5.02 15.93 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 13 O -0.35 -8.52 9.06 -40.65 -0.37 -8.88 16 14 C 0.50 10.83 6.34 34.45 0.22 11.05 16 15 O -0.50 -11.27 10.30 -19.27 -0.20 -11.47 16 16 C -0.11 -1.97 5.89 -104.83 -0.62 -2.59 16 17 C -0.06 -0.90 9.61 -39.19 -0.38 -1.27 16 18 C -0.13 -1.53 10.02 -39.62 -0.40 -1.93 16 19 C -0.09 -0.97 10.03 -39.53 -0.40 -1.37 16 20 C -0.13 -1.61 9.96 -39.43 -0.39 -2.01 16 21 C 0.20 3.15 4.44 -83.47 -0.37 2.78 16 22 N -0.56 -8.73 1.52 -120.60 -0.18 -8.91 16 23 C 0.09 1.03 9.91 59.84 0.59 1.62 16 24 C 0.56 9.50 6.51 -10.99 -0.07 9.43 16 25 O -0.53 -10.95 16.23 5.55 0.09 -10.86 16 26 C -0.19 -2.49 5.29 -91.78 -0.49 -2.98 16 27 C -0.14 -1.86 10.24 -26.73 -0.27 -2.14 16 28 C -0.15 -1.84 10.04 -26.73 -0.27 -2.11 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 1.21 7.79 -51.93 -0.40 0.80 16 31 H 0.03 0.80 6.06 -51.93 -0.31 0.48 16 32 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.11 2.94 5.95 -51.93 -0.31 2.63 16 34 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.14 2.20 7.61 -52.49 -0.40 1.80 16 36 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 37 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 38 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 39 H 0.07 1.03 7.17 -51.93 -0.37 0.66 16 40 H 0.07 0.68 8.05 -51.93 -0.42 0.26 16 41 H 0.07 0.68 5.99 -51.93 -0.31 0.37 16 42 H 0.12 1.22 6.43 -51.93 -0.33 0.89 16 43 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 44 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.10 1.44 7.67 -51.93 -0.40 1.04 16 LS Contribution 378.90 15.07 5.71 5.71 Total: -1.00 -33.00 378.90 -9.04 -42.04 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -6.56 Total: 5.97 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -3.13 Total: -5.23 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.44 Total: -33.20 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.48 Total: -31.21 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.00 -9.04 -42.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187932015.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.491 kcal (2) G-P(sol) polarization free energy of solvation -33.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds