Wall clock time and date at job start Tue Mar 31 2020 15:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47445 * 2 1 4 4 H 1.08998 * 109.46910 * 55.00124 * 3 2 1 5 5 C 1.50691 * 109.47468 * 175.00292 * 3 2 1 6 6 H 1.08001 * 120.00036 * 119.99712 * 5 3 2 7 7 C 1.37878 * 120.00194 * 300.00509 * 5 3 2 8 8 N 1.31513 * 119.99819 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00214 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47408 * 59.99444 * 9 7 5 11 11 H 1.48499 * 109.47468 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46858 * 299.99390 * 9 7 5 13 13 O 1.45201 * 109.46929 * 295.00566 * 3 2 1 14 14 C 1.34758 * 117.00141 * 89.99951 * 13 3 2 15 15 O 1.21509 * 120.00067 * 359.97438 * 14 13 3 16 16 C 1.47379 * 119.99898 * 180.02562 * 14 13 3 17 17 C 1.39745 * 120.20612 * 359.97435 * 16 14 13 18 18 C 1.37778 * 119.91528 * 180.02562 * 17 16 14 19 19 C 1.38583 * 120.33947 * 0.02562 * 18 17 16 20 20 C 1.38022 * 120.41500 * 359.73969 * 19 18 17 21 21 C 1.38850 * 120.07421 * 0.51852 * 20 19 18 22 22 N 1.39259 * 120.16528 * 179.76601 * 21 20 19 23 23 C 1.46496 * 119.99720 * 269.71615 * 22 21 20 24 24 C 1.34777 * 120.00021 * 89.72312 * 22 21 20 25 25 O 1.21283 * 119.99750 * 359.97438 * 24 22 21 26 26 C 1.50697 * 120.00260 * 180.27434 * 24 22 21 27 27 C 1.53003 * 117.49704 * 248.34866 * 26 24 22 28 28 C 1.52990 * 117.50138 * 179.72210 * 26 24 22 29 29 H 1.08999 * 109.46811 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46714 * 299.99838 * 1 2 3 31 31 H 1.08998 * 109.47305 * 59.99689 * 1 2 3 32 32 H 1.09006 * 109.46714 * 240.00161 * 2 1 3 33 33 H 1.08998 * 109.47305 * 120.00310 * 2 1 3 34 34 H 0.97002 * 119.99797 * 180.02562 * 8 7 5 35 35 H 1.07999 * 120.04398 * 0.04197 * 17 16 14 36 36 H 1.08000 * 119.82925 * 179.97438 * 18 17 16 37 37 H 1.08000 * 119.78911 * 179.97438 * 19 18 17 38 38 H 1.08000 * 119.96002 * 180.25449 * 20 19 18 39 39 H 1.09001 * 109.47420 * 269.99799 * 23 22 21 40 40 H 1.08997 * 109.47484 * 30.00371 * 23 22 21 41 41 H 1.09001 * 109.46582 * 150.00234 * 23 22 21 42 42 H 1.09003 * 115.54686 * 34.04726 * 26 24 22 43 43 H 1.08996 * 117.49883 * 359.97438 * 27 26 24 44 44 H 1.09000 * 117.49554 * 145.01799 * 27 26 24 45 45 H 1.09002 * 117.50052 * 214.97703 * 28 26 24 46 46 H 1.08996 * 117.50229 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1434 0.8783 1.2278 8 7 3.4063 0.3373 2.1731 9 14 6.0050 0.8812 1.3815 10 1 6.4996 2.2814 1.3819 11 1 6.3980 0.2176 2.6506 12 1 6.5975 0.1472 0.2345 13 8 1.6558 2.0917 -1.2407 14 6 0.4680 2.7280 -1.2559 15 8 -0.2278 2.7396 -0.2598 16 6 0.0125 3.4088 -2.4810 17 6 0.8090 3.3977 -3.6292 18 6 0.3775 4.0366 -4.7711 19 6 -0.8436 4.6917 -4.7877 20 6 -1.6435 4.7073 -3.6631 21 6 -1.2232 4.0736 -2.5013 22 7 -2.0266 4.0923 -1.3641 23 6 -1.8815 5.1700 -0.3824 24 6 -2.9376 3.1189 -1.1665 25 8 -3.0579 2.2269 -1.9794 26 6 -3.8114 3.1425 0.0611 27 6 -3.5838 2.0532 1.1112 28 6 -4.8303 2.0131 0.2248 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8295 -0.0606 2.9500 35 1 1.7616 2.8887 -3.6215 36 1 0.9944 4.0274 -5.6575 37 1 -1.1729 5.1899 -5.6875 38 1 -2.5956 5.2166 -3.6855 39 1 -1.1433 4.8825 0.3663 40 1 -1.5528 6.0788 -0.8864 41 1 -2.8404 5.3504 0.1034 42 1 -4.0962 4.1328 0.4164 43 1 -2.8025 1.3193 0.9138 44 1 -3.7190 2.3268 2.1576 45 1 -5.7855 2.2602 0.6881 46 1 -4.8691 1.2532 -0.5556 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187932015.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:45 Heat of formation + Delta-G solvation = -73.806635 kcal Electronic energy + Delta-G solvation = -29826.096971 eV Core-core repulsion = 25874.606041 eV Total energy + Delta-G solvation = -3951.490929 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.05968 -40.93408 -39.64824 -37.57616 -37.13379 -36.50639 -35.49991 -33.48629 -32.34558 -31.42928 -29.35729 -27.74879 -26.43941 -25.51687 -24.74901 -23.36336 -23.22333 -22.35454 -21.40407 -20.17235 -19.21404 -18.64640 -18.52581 -18.03324 -17.46494 -17.07343 -16.85263 -16.52012 -15.99804 -15.80922 -15.50979 -15.10943 -14.97823 -14.80192 -14.72501 -14.15633 -14.01751 -13.66018 -13.56610 -13.40569 -13.37570 -13.23378 -13.10464 -12.89797 -12.82154 -12.62809 -12.46374 -12.41294 -12.16554 -11.83401 -11.52066 -11.50184 -11.48430 -11.27885 -10.98083 -10.85766 -10.55638 -10.08891 -9.91599 -9.88107 -8.29402 -6.46615 -0.35396 0.21083 1.39591 1.40915 1.43445 1.51380 1.67379 1.87159 2.01220 2.40375 2.69949 2.91951 3.00005 3.55120 3.75725 3.81746 3.89675 3.94595 4.01034 4.06000 4.18395 4.26703 4.29578 4.34004 4.36326 4.43147 4.52768 4.59606 4.70540 4.76059 4.81723 4.87052 4.89747 4.96963 5.02961 5.13981 5.18659 5.21342 5.23660 5.32951 5.38789 5.48092 5.53423 5.60772 5.90228 5.92295 6.08799 6.22842 6.57649 6.97964 7.11363 7.25076 8.77366 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.012042 B = 0.004439 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.582077 B = 6305.585739 C = 7834.101950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.126 4.126 3 C 0.233 3.767 4 H 0.008 0.992 5 C -0.552 4.552 6 H 0.064 0.936 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.981 3.019 10 H -0.268 1.268 11 H -0.276 1.276 12 H -0.265 1.265 13 O -0.364 6.364 14 C 0.485 3.515 15 O -0.518 6.518 16 C -0.150 4.150 17 C -0.072 4.072 18 C -0.119 4.119 19 C -0.066 4.066 20 C -0.125 4.125 21 C 0.176 3.824 22 N -0.563 5.563 23 C 0.082 3.918 24 C 0.550 3.450 25 O -0.584 6.584 26 C -0.192 4.192 27 C -0.152 4.152 28 C -0.136 4.136 29 H 0.053 0.947 30 H 0.039 0.961 31 H 0.021 0.979 32 H 0.039 0.961 33 H 0.090 0.910 34 H 0.271 0.729 35 H 0.133 0.867 36 H 0.170 0.830 37 H 0.179 0.821 38 H 0.154 0.846 39 H 0.041 0.959 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.161 0.839 43 H 0.060 0.940 44 H 0.129 0.871 45 H 0.141 0.859 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.330 12.141 -9.212 20.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.164 4.164 3 C 0.180 3.820 4 H 0.026 0.974 5 C -0.589 4.589 6 H 0.082 0.918 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.804 3.196 10 H -0.193 1.193 11 H -0.201 1.201 12 H -0.190 1.190 13 O -0.281 6.281 14 C 0.331 3.669 15 O -0.409 6.409 16 C -0.153 4.153 17 C -0.091 4.091 18 C -0.137 4.137 19 C -0.084 4.084 20 C -0.144 4.144 21 C 0.085 3.915 22 N -0.291 5.291 23 C -0.058 4.058 24 C 0.342 3.658 25 O -0.464 6.464 26 C -0.212 4.212 27 C -0.189 4.189 28 C -0.174 4.174 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.040 0.960 32 H 0.058 0.942 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.151 0.849 36 H 0.187 0.813 37 H 0.196 0.804 38 H 0.172 0.828 39 H 0.060 0.940 40 H 0.108 0.892 41 H 0.127 0.873 42 H 0.178 0.822 43 H 0.079 0.921 44 H 0.147 0.853 45 H 0.159 0.841 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.559 11.572 -9.096 20.012 hybrid contribution 1.256 -0.526 0.742 1.550 sum -12.303 11.046 -8.354 18.525 Atomic orbital electron populations 1.21602 0.96635 0.99897 0.99463 1.21859 0.93914 0.98587 1.02076 1.20293 0.94508 0.88793 0.78396 0.97423 1.21269 0.90331 1.40277 1.07019 0.91759 1.25786 1.04252 0.93706 0.94237 1.70004 1.37532 1.37742 1.09798 0.85269 0.77605 0.78835 0.77922 1.19272 1.20051 1.19013 1.86513 1.35470 1.63271 1.42806 1.21523 0.79993 0.76695 0.88673 1.90706 1.55108 1.58946 1.36127 1.19829 0.97951 1.04077 0.93437 1.21626 0.99021 0.96721 0.91742 1.21610 0.97470 0.96666 0.97943 1.21782 0.92578 0.95618 0.98397 1.21565 1.01509 1.00159 0.91215 1.17775 0.88494 0.96406 0.88794 1.44969 1.35271 1.27308 1.21593 1.22035 1.03995 0.88267 0.91528 1.20266 0.79435 0.79529 0.86569 1.90641 1.71103 1.36723 1.47885 1.22280 1.03368 0.99169 0.96414 1.22869 1.00061 0.98976 0.97003 1.23026 0.94535 0.98263 1.01532 0.92759 0.94223 0.95981 0.94249 0.89199 0.91975 0.84901 0.81282 0.80396 0.82812 0.94041 0.89234 0.87286 0.82183 0.92104 0.85257 0.84124 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.83 8.56 71.98 0.62 -5.21 16 2 C -0.13 -6.80 5.49 30.59 0.17 -6.63 16 3 C 0.23 13.25 2.25 29.85 0.07 13.32 16 4 H 0.01 0.50 7.16 -2.39 -0.02 0.49 16 5 C -0.55 -32.09 8.90 25.60 0.23 -31.86 16 6 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 7 C 0.02 1.13 5.29 84.65 0.45 1.58 16 8 N -0.91 -52.87 11.29 21.45 0.24 -52.63 16 9 Si 0.98 43.35 29.54 68.60 2.03 45.38 16 10 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 12 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 13 O -0.36 -18.88 9.06 -56.69 -0.51 -19.40 16 14 C 0.49 22.77 6.34 70.23 0.45 23.22 16 15 O -0.52 -25.22 10.30 19.81 0.20 -25.01 16 16 C -0.15 -5.66 5.89 -20.00 -0.12 -5.78 16 17 C -0.07 -2.23 9.61 22.53 0.22 -2.01 16 18 C -0.12 -2.46 10.02 22.24 0.22 -2.24 16 19 C -0.07 -1.15 10.03 22.30 0.22 -0.93 16 20 C -0.13 -2.88 9.96 22.37 0.22 -2.66 16 21 C 0.18 5.65 4.44 38.62 0.17 5.82 16 22 N -0.56 -17.57 1.52 -653.85 -0.99 -18.56 16 23 C 0.08 1.95 9.91 127.77 1.27 3.22 16 24 C 0.55 18.91 6.51 87.66 0.57 19.48 16 25 O -0.58 -24.88 16.23 -3.04 -0.05 -24.93 16 26 C -0.19 -4.90 5.29 -11.54 -0.06 -4.96 16 27 C -0.15 -4.13 10.24 30.60 0.31 -3.82 16 28 C -0.14 -3.15 10.04 30.59 0.31 -2.85 16 29 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.04 2.00 7.79 -2.38 -0.02 1.98 16 31 H 0.02 1.10 6.06 -2.39 -0.01 1.08 16 32 H 0.04 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.09 5.17 5.95 -2.39 -0.01 5.16 16 34 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 35 H 0.13 4.26 7.61 -2.91 -0.02 4.23 16 36 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 37 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16 38 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 39 H 0.04 1.24 7.17 -2.39 -0.02 1.22 16 40 H 0.09 1.68 8.05 -2.39 -0.02 1.66 16 41 H 0.11 1.75 5.99 -2.39 -0.01 1.73 16 42 H 0.16 2.73 6.43 -2.39 -0.02 2.72 16 43 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 45 H 0.14 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.08 2.29 7.67 -2.39 -0.02 2.28 16 Total: -1.00 -79.22 378.90 7.22 -72.00 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: 0.99 Total: 25.46 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 5.31 Total: -2.32 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -0.75 Total: -71.18 kcal Atomic # 8 Polarization: -68.98 SS G_CDS: -0.36 Total: -69.34 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -79.22 7.22 -72.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187932015.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.803 kcal (2) G-P(sol) polarization free energy of solvation -79.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds