Wall clock time and date at job start Tue Mar 31 2020 15:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47290 * 2 1 4 4 H 1.08995 * 109.47497 * 304.99804 * 3 2 1 5 5 C 1.50710 * 109.47323 * 184.99831 * 3 2 1 6 6 H 1.07993 * 119.99908 * 240.00578 * 5 3 2 7 7 C 1.37870 * 119.99744 * 60.00208 * 5 3 2 8 8 N 1.31526 * 120.00037 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00059 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.46825 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46894 * 120.00062 * 9 7 5 12 12 H 1.48495 * 109.47086 * 240.00076 * 9 7 5 13 13 O 1.45201 * 109.46871 * 65.00253 * 3 2 1 14 14 C 1.34225 * 116.99888 * 269.99523 * 13 3 2 15 15 O 1.20825 * 120.00119 * 0.02562 * 14 13 3 16 16 C 1.50705 * 120.00223 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.87410 * 301.02266 * 16 14 13 18 18 C 1.54329 * 109.87786 * 62.19756 * 16 14 13 19 19 C 1.55157 * 102.93969 * 141.61191 * 18 16 14 20 20 C 1.54909 * 101.58224 * 324.49232 * 19 18 16 21 21 N 1.47023 * 109.88280 * 180.02562 * 16 14 13 22 22 C 1.34766 * 125.64795 * 61.67894 * 21 16 14 23 23 O 1.21555 * 120.00399 * 356.45157 * 22 21 16 24 24 C 1.47853 * 120.00026 * 176.44257 * 22 21 16 25 25 C 1.39576 * 120.14564 * 206.84411 * 24 22 21 26 26 C 1.37958 * 119.85150 * 179.75100 * 25 24 22 27 27 C 1.38359 * 120.14433 * 0.52322 * 26 25 24 28 28 C 1.38362 * 120.29440 * 359.75175 * 27 26 25 29 29 C 1.37962 * 120.14467 * 359.97330 * 28 27 26 30 30 H 1.08996 * 109.47390 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47017 * 300.00098 * 1 2 3 32 32 H 1.09002 * 109.46909 * 59.99420 * 1 2 3 33 33 H 1.09004 * 109.47014 * 239.99965 * 2 1 3 34 34 H 1.08998 * 109.47243 * 120.00217 * 2 1 3 35 35 H 0.97002 * 119.99710 * 180.02562 * 8 7 5 36 36 H 1.08998 * 110.71661 * 259.97183 * 18 16 14 37 37 H 1.09000 * 110.72252 * 23.24305 * 18 16 14 38 38 H 1.09008 * 111.00280 * 206.41921 * 19 18 16 39 39 H 1.09000 * 111.00324 * 82.57355 * 19 18 16 40 40 H 1.08995 * 110.37134 * 278.17512 * 20 19 18 41 41 H 1.09000 * 110.45821 * 155.89759 * 20 19 18 42 42 H 1.07992 * 120.07433 * 359.97438 * 25 24 22 43 43 H 1.07996 * 119.92771 * 180.27434 * 26 25 24 44 44 H 1.07997 * 119.85718 * 179.76715 * 27 26 25 45 45 H 1.07998 * 119.92846 * 179.97438 * 28 27 26 46 46 H 1.07997 * 120.07693 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8887 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4061 0.3375 -2.1733 9 14 6.0050 0.8799 -1.3811 10 1 6.5988 1.5440 -0.1930 11 1 6.4961 -0.5191 -1.4627 12 1 6.4000 1.6156 -2.6090 13 8 1.6559 2.0915 1.2408 14 6 0.4728 2.7254 1.2560 15 8 -0.2191 2.7370 0.2656 16 6 0.0070 3.4215 2.5088 17 1 -0.0570 2.7058 3.3285 18 6 0.9871 4.5564 2.8739 19 6 0.0448 5.6791 3.3826 20 6 -1.1847 5.4957 2.4582 21 7 -1.3083 4.0371 2.2792 22 6 -2.4390 3.3776 1.9589 23 8 -2.4105 2.1765 1.7740 24 6 -3.7143 4.1148 1.8326 25 6 -4.9269 3.4618 2.0592 26 6 -6.1131 4.1569 1.9447 27 6 -6.1030 5.4956 1.5954 28 6 -4.9047 6.1475 1.3638 29 6 -3.7112 5.4655 1.4805 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.8293 -0.0610 -2.9500 36 1 1.6688 4.2382 3.6627 37 1 1.5403 4.8860 1.9944 38 1 0.4960 6.6614 3.2422 39 1 -0.2242 5.5201 4.4268 40 1 -1.0137 5.9828 1.4983 41 1 -2.0807 5.8968 2.9320 42 1 -4.9364 2.4157 2.3272 43 1 -7.0518 3.6539 2.1242 44 1 -7.0345 6.0343 1.5034 45 1 -4.9038 7.1925 1.0911 46 1 -2.7765 5.9755 1.2998 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187992490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:35 Heat of formation + Delta-G solvation = -83.131929 kcal Electronic energy + Delta-G solvation = -29219.508784 eV Core-core repulsion = 25267.613479 eV Total energy + Delta-G solvation = -3951.895305 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.81485 -39.46115 -38.32442 -37.20136 -35.52400 -33.45264 -32.45295 -31.27071 -31.15794 -30.86397 -29.51459 -27.15315 -25.11405 -23.56020 -22.87103 -22.69243 -21.74274 -21.00047 -19.78044 -19.06608 -17.60183 -17.27964 -16.71094 -16.60177 -16.00715 -15.68324 -15.12849 -14.96508 -14.77646 -14.52391 -14.14336 -14.04975 -13.69209 -13.41043 -13.15094 -12.95578 -12.85943 -12.68780 -12.46188 -11.98469 -11.82460 -11.70266 -11.46958 -11.33532 -11.16974 -11.12944 -11.00776 -10.94439 -10.90045 -10.53203 -10.23928 -9.84779 -9.69252 -9.54649 -9.27386 -9.18425 -9.12215 -8.71653 -8.63684 -8.40151 -6.14144 -4.21454 0.76122 1.15332 2.71401 2.89231 3.10355 3.24919 3.31652 3.36371 3.63108 3.82899 4.27763 4.31205 4.37906 4.60122 4.69431 4.73702 4.80897 4.87867 5.12574 5.17210 5.18536 5.21437 5.28089 5.35562 5.55951 5.61182 5.66796 5.76576 5.78896 5.82626 6.05591 6.12648 6.14034 6.21966 6.27740 6.40825 6.49784 6.64667 6.67421 7.00794 7.14739 7.32017 7.38235 7.45840 7.67473 7.82171 8.03647 8.22797 8.23380 8.71960 8.96608 9.43592 10.92460 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.019424 B = 0.003156 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.141183 B = 8870.449733 C = 9627.946864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.135 4.135 3 C 0.224 3.776 4 H 0.044 0.956 5 C -0.519 4.519 6 H 0.069 0.931 7 C 0.061 3.939 8 N -0.887 5.887 9 Si 0.910 3.090 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.282 1.282 13 O -0.356 6.356 14 C 0.443 3.557 15 O -0.496 6.496 16 C 0.144 3.856 17 H 0.107 0.893 18 C -0.117 4.117 19 C -0.133 4.133 20 C 0.091 3.909 21 N -0.600 5.600 22 C 0.576 3.424 23 O -0.510 6.510 24 C -0.119 4.119 25 C -0.064 4.064 26 C -0.128 4.128 27 C -0.101 4.101 28 C -0.129 4.129 29 C -0.100 4.100 30 H 0.029 0.971 31 H 0.040 0.960 32 H 0.048 0.952 33 H 0.106 0.894 34 H 0.040 0.960 35 H 0.265 0.735 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.133 0.867 43 H 0.128 0.872 44 H 0.125 0.875 45 H 0.127 0.873 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.414 14.184 12.142 23.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.173 4.173 3 C 0.171 3.829 4 H 0.062 0.938 5 C -0.557 4.557 6 H 0.087 0.913 7 C -0.141 4.141 8 N -0.525 5.525 9 Si 0.737 3.263 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.208 1.208 13 O -0.273 6.273 14 C 0.283 3.717 15 O -0.384 6.384 16 C 0.039 3.961 17 H 0.125 0.875 18 C -0.155 4.155 19 C -0.171 4.171 20 C -0.031 4.031 21 N -0.335 5.335 22 C 0.366 3.634 23 O -0.384 6.384 24 C -0.122 4.122 25 C -0.083 4.083 26 C -0.146 4.146 27 C -0.119 4.119 28 C -0.147 4.147 29 C -0.118 4.118 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.124 0.876 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.151 0.849 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.145 0.855 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.624 13.337 11.499 22.891 hybrid contribution 0.838 -0.166 -0.478 0.979 sum -13.786 13.171 11.021 22.023 Atomic orbital electron populations 1.21826 0.97821 0.98863 1.01272 1.22005 0.92946 0.99252 1.03062 1.20641 0.94792 0.88815 0.78616 0.93792 1.21079 0.89700 1.38823 1.06118 0.91328 1.24901 0.99152 0.94862 0.95143 1.69924 1.35212 1.37880 1.09458 0.86246 0.84033 0.77876 0.78132 1.19491 1.20742 1.20826 1.86445 1.34025 1.62578 1.44204 1.23308 0.81159 0.77606 0.89627 1.90623 1.54851 1.57473 1.35435 1.21108 0.83428 0.96642 0.94943 0.87521 1.22597 0.96602 0.93175 1.03149 1.22865 0.95015 0.99631 0.99621 1.22764 0.99510 0.81125 0.99746 1.48095 1.07178 1.07784 1.70483 1.17916 0.82306 0.86748 0.76465 1.90838 1.85448 1.14225 1.47913 1.19882 0.93311 0.94363 1.04613 1.21262 0.90864 1.00166 0.96006 1.21134 0.97958 0.94681 1.00836 1.21351 0.98205 0.94795 0.97586 1.21126 0.92205 1.00293 1.01037 1.21887 0.99509 0.93284 0.97156 0.95185 0.94050 0.93250 0.87578 0.94156 0.92504 0.88373 0.89458 0.89172 0.90054 0.90736 0.89371 0.84890 0.85400 0.85740 0.85466 0.84305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 8.57 37.16 0.32 -3.18 16 2 C -0.13 -3.58 5.49 -26.74 -0.15 -3.73 16 3 C 0.22 6.17 2.25 -27.88 -0.06 6.10 16 4 H 0.04 1.35 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.73 8.90 -34.44 -0.31 -15.03 16 6 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -25.67 11.30 55.43 0.63 -25.05 16 9 Si 0.91 21.24 29.54 -169.99 -5.02 16.22 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 O -0.36 -8.69 9.78 -39.24 -0.38 -9.08 16 14 C 0.44 9.70 5.20 36.01 0.19 9.89 16 15 O -0.50 -12.37 12.10 -24.50 -0.30 -12.67 16 16 C 0.14 2.30 3.39 -68.10 -0.23 2.07 16 17 H 0.11 1.64 8.14 -51.93 -0.42 1.21 16 18 C -0.12 -1.37 6.45 -24.89 -0.16 -1.53 16 19 C -0.13 -1.07 7.08 -24.58 -0.17 -1.25 16 20 C 0.09 0.90 5.03 -2.50 -0.01 0.88 16 21 N -0.60 -8.87 2.84 -165.38 -0.47 -9.34 16 22 C 0.58 9.79 6.89 -12.33 -0.08 9.71 16 23 O -0.51 -10.86 15.74 -10.95 -0.17 -11.03 16 24 C -0.12 -1.60 5.70 -104.96 -0.60 -2.20 16 25 C -0.06 -0.78 9.59 -39.19 -0.38 -1.15 16 26 C -0.13 -1.19 10.03 -39.64 -0.40 -1.59 16 27 C -0.10 -0.83 10.04 -39.49 -0.40 -1.23 16 28 C -0.13 -1.10 10.03 -39.64 -0.40 -1.50 16 29 C -0.10 -1.07 7.94 -39.18 -0.31 -1.38 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.04 1.04 6.06 -51.93 -0.31 0.73 16 32 H 0.05 1.29 7.80 -51.93 -0.40 0.89 16 33 H 0.11 3.02 5.95 -51.93 -0.31 2.71 16 34 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.09 1.14 7.84 -51.93 -0.41 0.73 16 38 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.72 7.29 -51.93 -0.38 0.34 16 41 H 0.09 0.69 6.16 -51.93 -0.32 0.37 16 42 H 0.13 1.64 7.88 -52.49 -0.41 1.22 16 43 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 45 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 46 H 0.14 1.30 4.56 -52.49 -0.24 1.06 16 LS Contribution 370.31 15.07 5.58 5.58 Total: -1.00 -35.60 370.31 -9.89 -45.49 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -6.51 Total: 3.38 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -3.24 Total: -3.51 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.16 Total: -34.39 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -0.85 Total: -32.78 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.60 -9.89 -45.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187992490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.643 kcal (2) G-P(sol) polarization free energy of solvation -35.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds