Wall clock time and date at job start Tue Mar 31 2020 15:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47290 * 2 1 4 4 H 1.08995 * 109.47497 * 304.99804 * 3 2 1 5 5 C 1.50710 * 109.47323 * 184.99831 * 3 2 1 6 6 H 1.07993 * 119.99908 * 240.00578 * 5 3 2 7 7 C 1.37870 * 119.99744 * 60.00208 * 5 3 2 8 8 N 1.31526 * 120.00037 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00059 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.46825 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46894 * 120.00062 * 9 7 5 12 12 H 1.48495 * 109.47086 * 240.00076 * 9 7 5 13 13 O 1.45201 * 109.46871 * 65.00253 * 3 2 1 14 14 C 1.34225 * 116.99888 * 269.99523 * 13 3 2 15 15 O 1.20825 * 120.00119 * 0.02562 * 14 13 3 16 16 C 1.50705 * 120.00223 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.87410 * 301.02266 * 16 14 13 18 18 C 1.54329 * 109.87786 * 62.19756 * 16 14 13 19 19 C 1.55157 * 102.93969 * 141.61191 * 18 16 14 20 20 C 1.54909 * 101.58224 * 324.49232 * 19 18 16 21 21 N 1.47023 * 109.88280 * 180.02562 * 16 14 13 22 22 C 1.34766 * 125.64795 * 61.67894 * 21 16 14 23 23 O 1.21555 * 120.00399 * 356.45157 * 22 21 16 24 24 C 1.47853 * 120.00026 * 176.44257 * 22 21 16 25 25 C 1.39576 * 120.14564 * 206.84411 * 24 22 21 26 26 C 1.37958 * 119.85150 * 179.75100 * 25 24 22 27 27 C 1.38359 * 120.14433 * 0.52322 * 26 25 24 28 28 C 1.38362 * 120.29440 * 359.75175 * 27 26 25 29 29 C 1.37962 * 120.14467 * 359.97330 * 28 27 26 30 30 H 1.08996 * 109.47390 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47017 * 300.00098 * 1 2 3 32 32 H 1.09002 * 109.46909 * 59.99420 * 1 2 3 33 33 H 1.09004 * 109.47014 * 239.99965 * 2 1 3 34 34 H 1.08998 * 109.47243 * 120.00217 * 2 1 3 35 35 H 0.97002 * 119.99710 * 180.02562 * 8 7 5 36 36 H 1.08998 * 110.71661 * 259.97183 * 18 16 14 37 37 H 1.09000 * 110.72252 * 23.24305 * 18 16 14 38 38 H 1.09008 * 111.00280 * 206.41921 * 19 18 16 39 39 H 1.09000 * 111.00324 * 82.57355 * 19 18 16 40 40 H 1.08995 * 110.37134 * 278.17512 * 20 19 18 41 41 H 1.09000 * 110.45821 * 155.89759 * 20 19 18 42 42 H 1.07992 * 120.07433 * 359.97438 * 25 24 22 43 43 H 1.07996 * 119.92771 * 180.27434 * 26 25 24 44 44 H 1.07997 * 119.85718 * 179.76715 * 27 26 25 45 45 H 1.07998 * 119.92846 * 179.97438 * 28 27 26 46 46 H 1.07997 * 120.07693 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8887 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4061 0.3375 -2.1733 9 14 6.0050 0.8799 -1.3811 10 1 6.5988 1.5440 -0.1930 11 1 6.4961 -0.5191 -1.4627 12 1 6.4000 1.6156 -2.6090 13 8 1.6559 2.0915 1.2408 14 6 0.4728 2.7254 1.2560 15 8 -0.2191 2.7370 0.2656 16 6 0.0070 3.4215 2.5088 17 1 -0.0570 2.7058 3.3285 18 6 0.9871 4.5564 2.8739 19 6 0.0448 5.6791 3.3826 20 6 -1.1847 5.4957 2.4582 21 7 -1.3083 4.0371 2.2792 22 6 -2.4390 3.3776 1.9589 23 8 -2.4105 2.1765 1.7740 24 6 -3.7143 4.1148 1.8326 25 6 -4.9269 3.4618 2.0592 26 6 -6.1131 4.1569 1.9447 27 6 -6.1030 5.4956 1.5954 28 6 -4.9047 6.1475 1.3638 29 6 -3.7112 5.4655 1.4805 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.8293 -0.0610 -2.9500 36 1 1.6688 4.2382 3.6627 37 1 1.5403 4.8860 1.9944 38 1 0.4960 6.6614 3.2422 39 1 -0.2242 5.5201 4.4268 40 1 -1.0137 5.9828 1.4983 41 1 -2.0807 5.8968 2.9320 42 1 -4.9364 2.4157 2.3272 43 1 -7.0518 3.6539 2.1242 44 1 -7.0345 6.0343 1.5034 45 1 -4.9038 7.1925 1.0911 46 1 -2.7765 5.9755 1.2998 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187992490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:34 Heat of formation + Delta-G solvation = -103.947252 kcal Electronic energy + Delta-G solvation = -29220.411404 eV Core-core repulsion = 25267.613479 eV Total energy + Delta-G solvation = -3952.797925 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.11134 -40.92329 -39.41903 -38.42262 -37.44932 -35.54020 -33.58888 -33.29989 -31.94657 -31.78439 -30.65398 -29.24721 -26.18985 -25.38939 -24.19334 -23.58861 -22.88360 -22.22824 -21.56344 -20.55185 -19.09408 -18.60252 -18.45453 -17.76217 -17.45818 -17.01976 -16.84599 -16.52488 -15.96986 -15.70803 -15.26192 -15.11617 -14.95672 -14.81818 -14.50860 -14.25874 -14.04872 -13.87077 -13.67731 -13.56979 -13.41037 -13.28488 -13.11756 -12.84947 -12.77893 -12.60553 -12.56433 -12.23373 -12.13454 -11.86906 -11.82300 -11.76537 -11.47741 -11.21741 -11.08090 -10.85100 -10.56462 -10.05090 -9.93380 -9.81942 -8.28830 -6.46842 -0.10761 0.39701 1.36413 1.39553 1.42104 1.50753 1.57930 1.78150 2.16729 2.42536 2.83543 3.00325 3.30323 3.46917 3.65776 3.86207 3.90839 4.00842 4.07170 4.12096 4.21422 4.27215 4.32223 4.41088 4.47906 4.50594 4.52285 4.62228 4.73578 4.77444 4.78170 4.90486 5.00458 5.04852 5.05815 5.13387 5.15967 5.26379 5.30436 5.37527 5.42136 5.49116 5.49403 5.60782 5.93637 5.95199 6.10439 6.32449 6.59509 6.94499 7.05748 7.25463 8.78554 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.019424 B = 0.003156 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.141183 B = 8870.449733 C = 9627.946864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.127 4.127 3 C 0.230 3.770 4 H -0.001 1.001 5 C -0.545 4.545 6 H 0.071 0.929 7 C 0.013 3.987 8 N -0.918 5.918 9 Si 0.986 3.014 10 H -0.259 1.259 11 H -0.273 1.273 12 H -0.276 1.276 13 O -0.361 6.361 14 C 0.434 3.566 15 O -0.533 6.533 16 C 0.144 3.856 17 H 0.111 0.889 18 C -0.114 4.114 19 C -0.114 4.114 20 C 0.081 3.919 21 N -0.601 5.601 22 C 0.565 3.435 23 O -0.573 6.573 24 C -0.148 4.148 25 C -0.086 4.086 26 C -0.127 4.127 27 C -0.091 4.091 28 C -0.123 4.123 29 C -0.104 4.104 30 H 0.054 0.946 31 H 0.032 0.968 32 H 0.025 0.975 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.270 0.730 36 H 0.118 0.882 37 H 0.070 0.930 38 H 0.123 0.877 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.152 0.848 44 H 0.162 0.838 45 H 0.163 0.837 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.723 17.249 13.674 26.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.165 4.165 3 C 0.176 3.824 4 H 0.017 0.983 5 C -0.582 4.582 6 H 0.089 0.911 7 C -0.186 4.186 8 N -0.556 5.556 9 Si 0.809 3.191 10 H -0.183 1.183 11 H -0.198 1.198 12 H -0.201 1.201 13 O -0.278 6.278 14 C 0.277 3.723 15 O -0.422 6.422 16 C 0.038 3.962 17 H 0.129 0.871 18 C -0.152 4.152 19 C -0.151 4.151 20 C -0.039 4.039 21 N -0.334 5.334 22 C 0.356 3.644 23 O -0.453 6.453 24 C -0.151 4.151 25 C -0.105 4.105 26 C -0.145 4.145 27 C -0.109 4.109 28 C -0.140 4.140 29 C -0.122 4.122 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.136 0.864 37 H 0.089 0.911 38 H 0.141 0.859 39 H 0.121 0.879 40 H 0.095 0.905 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.170 0.830 44 H 0.179 0.821 45 H 0.180 0.820 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -14.941 16.462 13.063 25.785 hybrid contribution 0.789 -1.066 -0.987 1.653 sum -14.152 15.395 12.076 24.148 Atomic orbital electron populations 1.21623 0.96782 0.99851 0.99673 1.21868 0.93670 0.98744 1.02226 1.20299 0.94740 0.88773 0.78561 0.98280 1.21346 0.90023 1.39928 1.06952 0.91100 1.25911 1.04629 0.93799 0.94291 1.70059 1.37572 1.38036 1.09951 0.85088 0.77184 0.78301 0.78540 1.18279 1.19842 1.20105 1.86438 1.35757 1.63084 1.42482 1.24640 0.79679 0.76628 0.91365 1.90599 1.55399 1.58684 1.37508 1.21370 0.85304 0.98124 0.91410 0.87106 1.22682 0.96459 0.92851 1.03212 1.22917 0.92660 0.99521 1.00033 1.23152 1.01885 0.78045 1.00867 1.48335 1.05962 1.09902 1.69241 1.18690 0.83930 0.86434 0.75320 1.90779 1.86583 1.16942 1.50954 1.19800 0.91807 0.95733 1.07765 1.21312 0.91914 0.99818 0.97486 1.21433 0.97603 0.95474 0.99992 1.21833 0.99702 0.94169 0.95159 1.21554 0.91275 1.01768 0.99424 1.22051 1.01189 0.92018 0.96906 0.92733 0.94857 0.95559 0.89473 0.93600 0.92086 0.86355 0.91128 0.85913 0.87899 0.90463 0.86648 0.86748 0.83040 0.82066 0.81984 0.83306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.43 8.57 71.98 0.62 -5.81 16 2 C -0.13 -7.09 5.49 30.59 0.17 -6.92 16 3 C 0.23 13.36 2.25 29.85 0.07 13.43 16 4 H 0.00 -0.04 7.16 -2.39 -0.02 -0.06 16 5 C -0.55 -31.85 8.90 25.60 0.23 -31.62 16 6 H 0.07 4.00 7.81 -2.91 -0.02 3.98 16 7 C 0.01 0.74 5.29 84.65 0.45 1.19 16 8 N -0.92 -54.70 11.30 21.45 0.24 -54.45 16 9 Si 0.99 43.67 29.54 68.60 2.03 45.69 16 10 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 11 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 12 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 13 O -0.36 -18.56 9.78 -51.37 -0.50 -19.07 16 14 C 0.43 20.17 5.20 71.24 0.37 20.54 16 15 O -0.53 -28.57 12.10 27.47 0.33 -28.24 16 16 C 0.14 4.73 3.39 44.60 0.15 4.88 16 17 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 18 C -0.11 -2.54 6.45 31.78 0.20 -2.33 16 19 C -0.11 -1.46 7.08 31.99 0.23 -1.23 16 20 C 0.08 1.44 5.03 86.85 0.44 1.88 16 21 N -0.60 -18.11 2.84 -795.43 -2.26 -20.37 16 22 C 0.56 20.35 6.89 86.79 0.60 20.95 16 23 O -0.57 -26.61 15.74 11.66 0.18 -26.43 16 24 C -0.15 -4.10 5.70 -20.09 -0.11 -4.22 16 25 C -0.09 -2.17 9.59 22.53 0.22 -1.95 16 26 C -0.13 -2.16 10.03 22.23 0.22 -1.93 16 27 C -0.09 -1.16 10.04 22.33 0.22 -0.93 16 28 C -0.12 -1.66 10.03 22.23 0.22 -1.44 16 29 C -0.10 -2.05 7.94 22.53 0.18 -1.87 16 30 H 0.05 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.03 1.78 6.06 -2.39 -0.01 1.76 16 32 H 0.03 1.45 7.80 -2.39 -0.02 1.43 16 33 H 0.09 5.21 5.95 -2.38 -0.01 5.19 16 34 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 36 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.07 1.82 7.84 -2.39 -0.02 1.80 16 38 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.08 1.36 7.29 -2.39 -0.02 1.34 16 41 H 0.12 1.46 6.16 -2.39 -0.01 1.45 16 42 H 0.11 3.16 7.88 -2.91 -0.02 3.13 16 43 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 44 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 45 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 46 H 0.15 2.51 4.56 -2.91 -0.01 2.50 16 Total: -1.00 -85.24 370.31 5.48 -79.76 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.99 Total: 20.49 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 4.47 Total: 2.62 kcal Atomic # 7 Polarization: -72.81 SS G_CDS: -2.02 Total: -74.83 kcal Atomic # 8 Polarization: -73.75 SS G_CDS: 0.01 Total: -73.73 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -85.24 5.48 -79.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187992490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.187 kcal (2) G-P(sol) polarization free energy of solvation -85.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds